mRNA_L-elsbetiae_contig7092.15894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE) HSP 1 Score: 117 bits (292), Expect = 2.800e-27 Identity = 76/211 (36.02%), Postives = 115/211 (54.50%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEI----EQGDRWVHQRNPRQLRQLHPS-QSCRSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLREQLGVDIDKVPPL*RLDGCSQLELSGNVFLADQT 627 V KL + LYGL QSP WN T ++ G++ SDPCVYV+ SGN V+L++YVDD+L++G + +V +++L ++F MT++G LG+++ EQG +H R+ Q LH L +L GG+IS + Q AQST EAE+ AL + +E VY+ +L+ E VP D L ++GN + +T Sbjct: 121 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGIDVQRNYEQGTLAIH-RSTTQRGGLHLKFNDGTQLQDLRXLLAGGLISYGAKAQALTAQSTVEAEIQALGYSAREAVYISNLMTELNFKTFGSVPI--NSDSTGALTVAGNAMHSQRT 328
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.720e-26 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGD 309 V+KL+K LYGL+QSPRN+ A+ I+ IGF + SDPCVYV+G+G Y +L +YVDD L G P+VV+ +++QL +KF MT+ G A L LGMEI Q D Sbjct: 137 VMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGRTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQRD 236
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.540e-26 Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGD 309 V+KL+K LYGL+QSPRN+ A+ I+ IGF + SDPCV V+G+G Y +L +YVD+ L G P+VV+ +++QL NKF MT+ G A L LGMEI Q D Sbjct: 36 VMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVYGAGPTYAILCVYVDNCTLAGTTPSVVQDMKKQLSNKFKMTDGGPAELLLGMEIAQSD 135
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 112 bits (279), Expect = 1.350e-24 Identity = 69/173 (39.88%), Postives = 101/173 (58.38%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGDRWVHQRNPRQLRQLHPSQSCRSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLRE 528 V KL++ LYGL+QSPR WN T + +GF+ SD CVY+ G + + +++YVDD++L N +++S + L +F MT+LG LGMEIEQ D + + RQ + ++ +G +M+ GG IS S Q T+A S+TEAE +AL A QE V+L L E Sbjct: 300 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQ-DVVTGKMSMRQTK--FAKDILQNTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCE 469
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.470e-24 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGD 309 V+KL+K LYGL+QSPRN+ A+ I+ IGF + SDPCVYV+G+G Y +L +YVDD L G P+VV+ +++QL +KF MT+ G A L LGMEI Q D Sbjct: 1033 VMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSD 1132
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6H5KFG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.120e-23 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGD 309 V+KL+K LYGL+QSPRN+ A+ + IGF + SDPCVYV+G+G Y +L +YVD+ L G P+VV+ ++QL +KF+MT+ G A L LGMEI Q D Sbjct: 49 VMKLKKSLYGLKQSPRNFGNAFAKGNKEIGFTALLSDPCVYVYGAGPTYAILCVYVDNCTLAGRTPSVVQDWKKQLSDKFNMTDGGPAELLLGMEIYQRD 148
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A699GYG5_TANCI (Gag-Pol polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GYG5_TANCI) HSP 1 Score: 107 bits (267), Expect = 7.430e-23 Identity = 70/183 (38.25%), Postives = 107/183 (58.47%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYV--FGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGDR-----WVHQRN-PRQLRQLHPSQS--CRSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLRE 528 V KL K LYGL+Q+PR W I S+ + +++DPC Y FG+ N++++L +YVDD+L+ G N + ++ QL +F M +LG A+ LGM+I + DR W+ Q++ ++ Q Q +S TG ++ L G +S S LQ+ +A STTEAE +A A +E V+L LL E Sbjct: 770 VCKLNKSLYGLKQTPRYWYKRFDSFIRSLEYNRLHADPCAYFKRFGN-NDFIILLLYVDDMLVAGPNKDRINKLKAQLAREFEMKDLGPANKILGMQIHR-DRVSRKIWLSQKSYVNKILQRFNMQDYESKSTTGCVFTLSGRTVSWVSKLQSVVAMSTTEAEYVAAAQASKEAVWLKMLLEE 950
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6A2YDU0_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YDU0_HIBSY) HSP 1 Score: 107 bits (266), Expect = 1.040e-22 Identity = 78/224 (34.82%), Postives = 123/224 (54.91%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSG-NEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQ--GDR--WVHQRNPRQLRQLHPSQSC-------------RSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLREQLGVDIDKVPPL*RLDGCSQLELSGNVFLADQT 627 V +L K LYGL+Q+PR W I +G+ + +DPC Y SG N++V+L +YVDD+L+ G N ++ ++ Q+ +F M +LGSA+ LGM+I + +R W+ Q+N L+++ S +S TG L+ + GG +S S LQ+ +A STTEA+ +A A +E ++L LL E+LG + + V D S L L+ N +T Sbjct: 806 VCRLNKYLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSGDNDFVILLLYVDDILVAGPNKDHIEELKAQMAREFEMKDLGSANKILGMQIHRDISNRKIWLSQKN--YLKKILSRFSMQDYSDYAGDLDKSKSTTGYLFKVAGGAVSWVSKLQSVVATSTTEAKYVAATQASKEAIWLKMLL-EELGHNQEYVSLF--CDSQSTLHLARNPAFHSRT 1024
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A6A3A624_HIBSY (AP2-like ethylene-responsive transcription factor n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A624_HIBSY) HSP 1 Score: 99.0 bits (245), Expect = 6.270e-20 Identity = 64/174 (36.78%), Postives = 95/174 (54.60%), Query Frame = 1 Query: 10 VLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSG-NEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELGMEIEQGDRWVHQRNPRQLRQLHPSQSCRSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLRE 528 V +L K LYGL Q+PR W I +G+ + ++ C Y SG N++V+L +YVDD+L+ G N ++ ++ QL +F M +LGS + LGM+I R R L S +S TG ++ + G +S S LQ +A STTEAE +A A +E ++L LL E Sbjct: 520 VCRLNKSLYGLNQAPRYWYKRFDSFIMCLGYNRLNANLCAYFKRSGDNDFVILLLYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSTNKILGMQIH-----------RDRRDLDKS---KSTTGYVFKVADGAVSWVSKLQLVVATSTTEAEYVAATQASKEAIWLKMLLEE 679
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Match: A0A438IAK4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IAK4_VITVI) HSP 1 Score: 93.6 bits (231), Expect = 8.980e-19 Identity = 63/200 (31.50%), Postives = 106/200 (53.00%), Query Frame = 1 Query: 1 KQQVLKLRKPLYGLRQSPRNWNTTCARAIESIGFRLIYSDPCVYVFGSGNEYVVLSIYVDDVLLLGVNPTVVKSIREQLMNKFSMTNLGSASLELG-MEIEQGDRW-VHQRNPRQLRQLHPSQSC-----------------RSCTGLLYMLGGGVISSASVLQNTIAQSTTEAELIALHGALQEGVYLLSLLREQLGVD 543 KQ V KL++ +YGL+++ R W + I S F+ D C+Y+ SG+ +++L +YVDD+LL + ++ + L +KF M +LG+AS LG + +GD++ +HQ + +L + + RS +G ++ML V+S SV Q IA ST EA+ IA + A G++L + + + VD Sbjct: 43 KQLVCKLKRSIYGLKRASRQWYRKFDQVITSFSFKENTIDQCIYLKFSGSRFIILVLYVDDILLASSDMELLHETKRFLSSKFDMKDLGNASFVLGDTSVAKGDKFSLHQCSKNELEKKDMERYLSNLGMDHWKKAKRVMRRRSTSGYIFMLARRVVSWKSVKQTLIASSTMEAKFIACYEASNHGIWLWNFITQLRIVD 242 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7092.15894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7092.15894.1 >prot_L-elsbetiae_contig7092.15894.1 ID=prot_L-elsbetiae_contig7092.15894.1|Name=mRNA_L-elsbetiae_contig7092.15894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp MNKFSMTNLGSASLELGMEIEQGDRWVHQRNPRQLRQLHPSQSCRSCTGLback to top mRNA from alignment at L-elsbetiae_contig7092:397..1478- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7092.15894.1 ID=mRNA_L-elsbetiae_contig7092.15894.1|Name=mRNA_L-elsbetiae_contig7092.15894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1082bp|location=Sequence derived from alignment at L-elsbetiae_contig7092:397..1478- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7092:397..1478- >mRNA_L-elsbetiae_contig7092.15894.1 ID=mRNA_L-elsbetiae_contig7092.15894.1|Name=mRNA_L-elsbetiae_contig7092.15894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig7092:397..1478- (Laminarionema elsbetiae ELsaHSoW15)back to top |