mRNA_L-elsbetiae_contig7081.15886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7081.15886.1
Unique NamemRNA_L-elsbetiae_contig7081.15886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7081.15886.1 vs. uniprot
Match: A0A6H5JLR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.650e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = -1 
Query:  634 EELTRGGRRAMGMERYKKEHNNAALDEHHNLLGIPYSW 747
            ++LTRGGRRAMGM R+ KEH NAALDEHHNLLGIPYSW
Sbjct:  516 DQLTRGGRRAMGMGRFMKEHYNAALDEHHNLLGIPYSW 553
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BLAST of mRNA_L-elsbetiae_contig7081.15886.1 vs. uniprot
Match: D7G0N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.450e-10
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = -1 
Query:  634 EELTRGGRRAMGMERYKKEHNNAALDEHHNLLGIPYSW 747
            ++LTRGGRRAMGM R+ KEH NAALDEHHNLL IPYSW
Sbjct:  346 DQLTRGGRRAMGMGRFMKEHYNAALDEHHNLLDIPYSW 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7081.15886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLR0_9PHAE8.650e-1184.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0N4_ECTSI5.450e-1081.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7081contigL-elsbetiae_contig7081:191..937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size749
Cds size543
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.743087-CDS-L-elsbetiae_contig7081:190..7331622816785.743087-CDS-L-elsbetiae_contig7081:190..733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7081 191..733 +
1691683811.914446-CDS-L-elsbetiae_contig7081:190..7331691683811.914446-CDS-L-elsbetiae_contig7081:190..733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7081 191..733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.7538686-UTR-L-elsbetiae_contig7081:733..9371622816785.7538686-UTR-L-elsbetiae_contig7081:733..937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7081 734..937 +
1691683811.929145-UTR-L-elsbetiae_contig7081:733..9371691683811.929145-UTR-L-elsbetiae_contig7081:733..937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7081 734..937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7081.15886.1prot_L-elsbetiae_contig7081.15886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7081 191..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7081.15886.1

>prot_L-elsbetiae_contig7081.15886.1 ID=prot_L-elsbetiae_contig7081.15886.1|Name=mRNA_L-elsbetiae_contig7081.15886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
SLDCSTLEALRKTTPSRQKKQSRKQRPLRPHAHSKLPCAYPPLGRWVRGI
TPTKAVRQTTNARGRQETNHKTPSREAPSNDTYTPKTLAQTAGGQDCGAP
LPLAIFPLTKIPVATRHGLKYKTHGGGGGGFVHYSSCTHQRRNKRQYTVL
RTSPSKGSASSTRTATVLTASHQQTASVLI*
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mRNA from alignment at L-elsbetiae_contig7081:191..937+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7081.15886.1 ID=mRNA_L-elsbetiae_contig7081.15886.1|Name=mRNA_L-elsbetiae_contig7081.15886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig7081:191..937+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCTCGATTGCTCGACGCTCGAGGCGCTGCGCAAAACAACGCCTTCTAG
ACAAAAAAAACAATCACGAAAACAGCGGCCGCTTAGACCGCACGCGCACA
GCAAGCTGCCGTGCGCGTACCCGCCGCTCGGAAGGTGGGTACGCGGCATA
ACCCCCACCAAAGCCGTCCGTCAAACAACAAACGCGCGGGGTAGGCAGGA
GACTAATCACAAAACGCCGAGTCGCGAAGCGCCGAGCAACGACACGTACA
CACCTAAAACACTGGCACAAACAGCCGGTGGACAAGACTGCGGAGCCCCC
CTCCCCCTGGCCATCTTCCCACTCACCAAAATACCAGTAGCTACACGACA
CGGGCTAAAATACAAAACACACGGGGGGGGGGGGGGGGGGTTCGTTCATT
ACTCCTCGTGTACACATCAGAGAAGGAACAAGAGACAATATACGGTGCTC
CGGACGTCTCCTTCAAAAGGTTCCGCGTCGAGCACACGCACAGCAACAGT
GCTAACCGCATCACACCAGCAGACCGCATCGGTGCTCATCTGAGGCTTGG
CTACAACATAACACCTGGCGCCCGCCCACACCGCCGTGCTTTCAATTCAA
AACCCCCTCCAAATTAGAAGGAAAAAAACATCACCAAGAGTACGGAATAC
CCAGCAGGTTGTGGTGTTCATCAAGCGCCGCGTTGTTGTGCTCCTTCTTG
TATCGCTCCATGCCCATCGCACGCCTGCCCCCCCGCGTCAGCTCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7081:191..937+

>mRNA_L-elsbetiae_contig7081.15886.1 ID=mRNA_L-elsbetiae_contig7081.15886.1|Name=mRNA_L-elsbetiae_contig7081.15886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig7081:191..937+ (Laminarionema elsbetiae ELsaHSoW15)
TCGCTCGATTGCTCGACGCTCGAGGCGCTGCGCAAAACAACGCCTTCTAG
ACAAAAAAAACAATCACGAAAACAGCGGCCGCTTAGACCGCACGCGCACA
GCAAGCTGCCGTGCGCGTACCCGCCGCTCGGAAGGTGGGTACGCGGCATA
ACCCCCACCAAAGCCGTCCGTCAAACAACAAACGCGCGGGGTAGGCAGGA
GACTAATCACAAAACGCCGAGTCGCGAAGCGCCGAGCAACGACACGTACA
CACCTAAAACACTGGCACAAACAGCCGGTGGACAAGACTGCGGAGCCCCC
CTCCCCCTGGCCATCTTCCCACTCACCAAAATACCAGTAGCTACACGACA
CGGGCTAAAATACAAAACACACGGGGGGGGGGGGGGGGGGTTCGTTCATT
ACTCCTCGTGTACACATCAGAGAAGGAACAAGAGACAATATACGGTGCTC
CGGACGTCTCCTTCAAAAGGTTCCGCGTCGAGCACACGCACAGCAACAGT
GCTAACCGCATCACACCAGCAGACCGCATCGGTGCTCATCTGATCGCTCG
ATTGCTCGACGCTCGAGGCGCTGCGCAAAACAACGCCTTCTAGACAAAAA
AAACAATCACGAAAACAGCGGCCGCTTAGACCGCACGCGCACAGCAAGCT
GCCGTGCGCGTACCCGCCGCTCGGAAGGTGGGTACGCGGCATAACCCCCA
CCAAAGCCGTCCGTCAAACAACAAACGCGCGGGGTAGGCAGGAGACTAAT
CACAAAACGCCGAGTCGCGAAGCGCCGAGCAACGACACGTACACACCTAA
AACACTGGCACAAACAGCCGGTGGACAAGACTGCGGAGCCCCCCTCCCCC
TGGCCATCTTCCCACTCACCAAAATACCAGTAGCTACACGACACGGGCTA
AAATACAAAACACACGGGGGGGGGGGGGGGGGGTTCGTTCATTACTCCTC
GTGTACACATCAGAGAAGGAACAAGAGACAATATACGGTGCTCCGGACGT
CTCCTTCAAAAGGTTCCGCGTCGAGCACACGCACAGCAACAGTGCTAACC
GCATCACACCAGCAGACCGCATCGGTGCTCATCTGA
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