mRNA_L-elsbetiae_contig7062.15870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE) HSP 1 Score: 219 bits (557), Expect = 9.060e-64 Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDLEKFRPRVCQLVASLTG 346 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEA+LCVECGYCAYAHF FRL AA+ETDFTPVT EAELAEA+RLAD+R LAR LQQ+LE+ RPRVCQLVASLTG Sbjct: 5832 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAFLCVECGYCAYAHFSFRLIAALETDFTPVTTEAELAEANRLADKRTQLARNLQQELERLRPRVCQLVASLTG 5946
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI) HSP 1 Score: 218 bits (554), Expect = 2.290e-63 Identity = 101/115 (87.83%), Postives = 108/115 (93.91%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDLEKFRPRVCQLVASLTG 346 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEA+LCVECGYCAYAHF FRL AA+ETDFTPVT EAELAEA+RLAD+R LAR +QQ+LE+ RPRVCQLVASLTG Sbjct: 5326 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAFLCVECGYCAYAHFSFRLIAALETDFTPVTTEAELAEANRLADKRTQLARNVQQELERLRPRVCQLVASLTG 5440
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: F0Y2R4_AURAN (UBR-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2R4_AURAN) HSP 1 Score: 127 bits (320), Expect = 7.830e-32 Identity = 59/117 (50.43%), Postives = 72/117 (61.54%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDLEKFRPRVCQLVASLTGGG 352 G LHCPRCGR VTD HGVC+ CGEVAFQC QCRHINYE L+A+LCVECGYCA+ FG+RL + D + + EL A R R + R + L + P +L + G G Sbjct: 4365 GACLHCPRCGRAVTDAHGVCQHCGEVAFQCRQCRHINYERLDAFLCVECGYCAFGDFGYRLRSEAAPDALAIASAEELEAARRRLQDRADVCRDTRATLRRLLPECARLARCVAGRG 4481
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A7S3JQW5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQW5_9STRA) HSP 1 Score: 125 bits (314), Expect = 5.020e-31 Identity = 62/110 (56.36%), Postives = 75/110 (68.18%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAEL-AEASRLADQRIHLARTLQQDLEKFRPRVCQL 328 GG+LHCPRCGR V D HGVC+ CGEVAFQC QCRHINYE L+A+LCVECGYCA+ + F+L + D P+ EAEL A SRLAD I R + L++ P+ L Sbjct: 1925 GGSLHCPRCGRRVADAHGVCQHCGEVAFQCRQCRHINYERLDAFLCVECGYCAFGEYNFQLKSEPAPDALPIKTEAELDAARSRLADY-IDTVRLARCSLQRILPQAAVL 2033
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA) HSP 1 Score: 122 bits (307), Expect = 4.430e-30 Identity = 60/108 (55.56%), Postives = 71/108 (65.74%), Query Frame = 2 Query: 11 LHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAA-VETDFTPVTNEAELAEASRLADQRIHLARTLQQDLEKFRPRVCQLV 331 L CPRCGRPVTDMHG+CRQCGEVAFQC QCRHINYE L+A+LCVECGYCAY F FR+ A + EAE +A + + ++ L + RPRV LV Sbjct: 4261 LLCPRCGRPVTDMHGICRQCGEVAFQCRQCRHINYERLDAFLCVECGYCAYGQFSFRVAATRAGVGCDVIATEAECKDAIKAVEACAARMEQARKQLHELRPRVQALV 4368
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A8J2S518_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S518_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.100e-27 Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 11 LHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDLEKFRPRVCQLVASL 340 LHCPRCGR VTD HGVC+ CGEVAFQC QCRHINYE L+A+LCVECGYCA+ F +RL + D + +E +L A R +++L + P + +L Sbjct: 3971 LHCPRCGRAVTDAHGVCQHCGEVAFQCRQCRHINYERLDAFLCVECGYCAFGDFSYRLRSDPAPDALSIRSEEDLQRAVARLRDRADACADARRELRRLLPECARRARAL 4080
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A7S3LDJ4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDJ4_9STRA) HSP 1 Score: 106 bits (265), Expect = 2.020e-24 Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRL 253 G +HCPRC R V + HGVC CGEVAFQC +CRHINY+ L+A+LCVECGYCA F F + AA T+ VTN+ E +A ++ Sbjct: 2126 GFVVHCPRCSRIVQNAHGVCGNCGEVAFQCRKCRHINYDRLDAFLCVECGYCASGTFHFEIVAATATNAVAVTNDVEYEKAQKM 2209
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A7S0UG02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UG02_9STRA) HSP 1 Score: 105 bits (263), Expect = 3.490e-24 Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 2 Query: 2 GGALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDL-EKFR 310 G LHCPRC RPVT+ HGVC CGEVAFQC +CRHINY+ L+A+LCVECGY F F L +AV T+ T + ++ E+ + D + L++ L EK R Sbjct: 457 GMVLHCPRCTRPVTNAHGVCVTCGEVAFQCRKCRHINYDRLDAFLCVECGYTCCGSFSFELNSAVVTNATAINDDTAFDESIKRYDTASSIQEGLKEKLVEKIR 560
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A1E7F0A7_9STRA (UBR-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0A7_9STRA) HSP 1 Score: 104 bits (260), Expect = 9.650e-24 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 5 GALHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEASRLADQRIHLARTLQQDL-EKFR 310 G LHCPRC RPVT+ HGVC CGEVAFQC +CRHINY+ L+A+LCVECGY F F L AV T+ +T++ L ++ ++ + + L++ L EK R Sbjct: 4251 GTLHCPRCTRPVTNAHGVCVTCGEVAFQCRKCRHINYDRLDAFLCVECGYTCCGSFSFELNYAVATNAIAITDDKVLDKSIKMYGRSSSIQEGLREKLGEKLR 4353
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Match: A0A1Z5K3R1_FISSO (E3 ubiquitin-protein ligase UBR4 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3R1_FISSO) HSP 1 Score: 102 bits (254), Expect = 6.070e-23 Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 2 Query: 11 LHCPRCGRPVTDMHGVCRQCGEVAFQCCQCRHINYESLEAYLCVECGYCAYAHFGFRLTAAVETDFTPVTNEAELAEA 244 +HCPRC R VT+ HGVC CGEVAFQC +CRHINY+ L A+LCVECGYCA + LTAAV T+ +T + + EA Sbjct: 1220 IHCPRCMRVVTNAHGVCGSCGEVAFQCRKCRHINYDRLNAFLCVECGYCASGGLAYELTAAVATNAVAITCDNDYKEA 1297 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7062.15870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7062.15870.1 >prot_L-elsbetiae_contig7062.15870.1 ID=prot_L-elsbetiae_contig7062.15870.1|Name=mRNA_L-elsbetiae_contig7062.15870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp RGRPALPPVRQARDGHARGVPPVRRGSFPMLPVSPHQLRVPGSVPVRGVRback to top mRNA from alignment at L-elsbetiae_contig7062:6987..9317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7062.15870.1 ID=mRNA_L-elsbetiae_contig7062.15870.1|Name=mRNA_L-elsbetiae_contig7062.15870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2331bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:6987..9317- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7062:6987..9317- >mRNA_L-elsbetiae_contig7062.15870.1 ID=mRNA_L-elsbetiae_contig7062.15870.1|Name=mRNA_L-elsbetiae_contig7062.15870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:6987..9317- (Laminarionema elsbetiae ELsaHSoW15)back to top |