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Homology
BLAST of mRNA_L-elsbetiae_contig7062.15867.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE) HSP 1 Score: 227 bits (578), Expect = 4.290e-62 Identity = 183/390 (46.92%), Postives = 220/390 (56.41%), Query Frame = 1
Query: 43 SSGGLRGALRCTSPRSLFPDHWLLRLMSSRQSPLLRTFTGMVIGALAAFKGPGISRELAEVAAHLMGVVGAEGSEAAGLQALSLLGRLCSGITTERESQAYMEQRGLRGFLAGSVLLEARRLQDQSNAAAQPPPPFSFGR-LDPAAATPAAPRTGELLLRLAEAL---HAVDARPAPVVEGDSREVVAPAVPASXXXXXNHAXXXXXXXXXXXGDADAGTAEG--GGEERRAVSSSPMKDLVLETPPALTEGSGGPGGAAVGGSGAEEQYLDHVLEALVRIRGIVLPRISANNL------------------------SRATEILQRLTGMPPSAGASCPSTSXXXXXXXXXXXXXXXXXXXXXXXXGLTPEARKRAYLRSSVRVLRRNT 1122
S GGL+ A R +S FP+HWLLRLM+++QSP+LRTF+GMV+GA+AAFKGP S+E+AEVAAH++GVVGA+GSEAAGLQ LSLLGRLCSG+ T RE+QAYMEQRGL GFLA +VLLE RRLQDQS D A A P APRTGE LLRLAEAL HA + A +V+GD +++ PA A G A T G G+ A SS+P + A T+G A V G E++LDHVLEA+VR RGI +P ++ QR +P AG XXXXXXXXXXX TPEARKRA+LR+SVRVLRRNT
Sbjct: 6960 SGGGLQQA-RFSS----FPEHWLLRLMANKQSPVLRTFSGMVLGAMAAFKGPRRSKEVAEVAAHMVGVVGADGSEAAGLQTLSLLGRLCSGVPTNRETQAYMEQRGLSGFLAAAVLLETRRLQDQSXXXXXXXXXXXXXXPADAATAPPEAPRTGEFLLRLAEALGAVHAASSLSAAMVDGDEWKLLMPADGAPTKAAET------------GGSASDATESGHAAGDNEGASSSTPAAGEKV----AATDGFAAAAAADV--KGTVERHLDHVLEAMVRARGIAMPHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHCSDPQQRSAAVPGPAGXXX-----------------XXXXXXXXXXXXATPEARKRAFLRASVRVLRRNT 7309
BLAST of mRNA_L-elsbetiae_contig7062.15867.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI) HSP 1 Score: 106 bits (264), Expect = 6.910e-21 Identity = 53/78 (67.95%), Postives = 71/78 (91.03%), Query Frame = 1
Query: 88 SLFPDHWLLRLMSSRQSPLLRTFTGMVIGALAAFKGPGISRELAEVAAHLMGVVGAEGSEAAGLQALSLLGRLCSGIT 321
S FP+HWLLRLM++++SP+LRTF+GMV+GA+AAFKGP S+E+AEVAAH++GVVGA+GSEAAGLQ + +L RL +GI+
Sbjct: 6167 SSFPEHWLLRLMANKRSPVLRTFSGMVLGAMAAFKGPRRSKEVAEVAAHMVGVVGADGSEAAGLQVIEILQRL-TGIS 6243
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 106.7 |
| Seed ortholog evalue | 2.6e-20 |
| Seed eggNOG ortholog | 2880.D8LLX0 |
| KEGG ko | ko:K10691 |
| KEGG Pathway | ko05165,ko05203,map05165,map05203 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | perineurial glial growth |
| EggNOG OGs | KOG1776@1,KOG1776@2759 |
| EC | 2.3.2.27 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04121 |
| Exons | 4 |
| Model size | 1209 |
| Cds size | 1206 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816784.194541-CDS-L-elsbetiae_contig7062:1536..1849 | 1622816784.194541-CDS-L-elsbetiae_contig7062:1536..1849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 1537..1849 - |
| 1691683810.7248738-CDS-L-elsbetiae_contig7062:1536..1849 | 1691683810.7248738-CDS-L-elsbetiae_contig7062:1536..1849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 1537..1849 - |
| 1622816784.2104883-CDS-L-elsbetiae_contig7062:2280..2777 | 1622816784.2104883-CDS-L-elsbetiae_contig7062:2280..2777 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 2281..2777 - |
| 1691683810.73812-CDS-L-elsbetiae_contig7062:2280..2777 | 1691683810.73812-CDS-L-elsbetiae_contig7062:2280..2777 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 2281..2777 - |
| 1622816784.2289324-CDS-L-elsbetiae_contig7062:3136..3250 | 1622816784.2289324-CDS-L-elsbetiae_contig7062:3136..3250 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 3137..3250 - |
| 1691683810.7530746-CDS-L-elsbetiae_contig7062:3136..3250 | 1691683810.7530746-CDS-L-elsbetiae_contig7062:3136..3250 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 3137..3250 - |
| 1622816784.2408748-CDS-L-elsbetiae_contig7062:3672..3954 | 1622816784.2408748-CDS-L-elsbetiae_contig7062:3672..3954 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 3673..3954 - |
| 1691683810.7641704-CDS-L-elsbetiae_contig7062:3672..3954 | 1691683810.7641704-CDS-L-elsbetiae_contig7062:3672..3954 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig7062 3673..3954 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7062.15867.1 >prot_L-elsbetiae_contig7062.15867.1 ID=prot_L-elsbetiae_contig7062.15867.1|Name=mRNA_L-elsbetiae_contig7062.15867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=402bp
ASASASASAGAGVGSSGGLRGALRCTSPRSLFPDHWLLRLMSSRQSPLLR
TFTGMVIGALAAFKGPGISRELAEVAAHLMGVVGAEGSEAAGLQALSLLG
RLCSGITTERESQAYMEQRGLRGFLAGSVLLEARRLQDQSNAAAQPPPPF
SFGRLDPAAATPAAPRTGELLLRLAEALHAVDARPAPVVEGDSREVVAPA
VPASPPTPLNHAEVGGAGGAGASGDADAGTAEGGGEERRAVSSSPMKDLV
LETPPALTEGSGGPGGAAVGGSGAEEQYLDHVLEALVRIRGIVLPRISAN
NLSRATEILQRLTGMPPSAGASCPSTSTTSAGTGATGTRAAASAAGGGGG
AGLTPEARKRAYLRSSVRVLRRNTHAPQLSSVAAPPAPQSVVGGGASGGG
GG back to topmRNA from alignment at L-elsbetiae_contig7062:1536..3954- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig7062.15867.1 ID=mRNA_L-elsbetiae_contig7062.15867.1|Name=mRNA_L-elsbetiae_contig7062.15867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2419bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:1536..3954- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGTGCGAGTGCGAGTGCGAGTGCCGGTGCCGGTGTTGGGTCCAGCGG
CGGCCTTCGCGGCGCCCTGCGCTGCACCTCGCCGCGATCGCTCTTCCCGG
ACCACTGGCTGCTGAGGCTGATGTCGAGCCGCCAGTCGCCTTTGCTGAGG
ACGTTCACCGGCATGGTGATCGGCGCGCTGGCCGCGTTCAAGGGCCCCGG
CATCAGCAGGGAGTTGGCGGAGGTGGCGGCTCACCTGATGGGGGTGGTCG
GGGCCGAGGGGTCGGAGGCGGCGGGGCTGCAGGTTTGTAACCGTGGATAT
TTCGTTATTTTTGTCTTGTATGCACGTGAAAGTTGATCGGTGGGGTCGGG
CTTGGAGAAGTAAGTGGGCAAGGAGGGGAAGGGACACCGTGGCGTTGTTG
GTCGCCCTTTACTTCTGCGAAGAGCCGTGTGTGCCCTTTGCTCCCTTTTT
TTTTTTGTTTCTCAGGCCCGGCCAACGCGACTGGCTGGCTGGCCAGCGGC
GGCGATCATGGATCACTTTGAGGGCGTTGTCTGTTTTTTTGTTATGTTTG
TTTGTGATGATGCCGTTGGTGGTTTACGTGTGCACGCGGCGGCGACACCT
GAACGACTTTCGCGCAACAATCTCGTCTGTTTTCGAGTAATGCCGCCTTC
TGTTCTTACTCGCCGTCGTGTTCTCTGGTCGTGCGTGGCTGCTTCCGAGC
GCAGGCGTTGTCTCTCCTGGGCCGTCTCTGCTCCGGGATTACCACGGAAC
GGGAGTCGCAAGCGTACATGGAGCAGCGGGGGCTCCGCGGGTTCCTGGCC
GGGTCCGTGCTCCTCGAGGTGTGTGTCAAAAGTTGACATACAGAGGAGCA
GTTGTAGCACCGCATACCGGCGCTGTGCAGGGTGCAGTTTTCCGCAAAGC
TGCGTGCAGGCCATTTTAGTGGAGGTGTCTGTTTCGGGTGAAGGTCCGAC
GACGGAGCGTAACCGCAGAACTCGTGTGCCGTGCGAGTCCGATGGCAGGC
GGCAGCTGTAAAGCTAGGCGGCAGGCATCCCCGTCTCTCGAAGGTCGAGC
CTCTACATACCATCTCAATCGTGTGCCTCACTGAACCCCCTCCCCCTCCC
CCTCCCCCGTTCTCTCTCTTCTCCACGCGTCTGTCTCGCCGTCCGCTGCC
CCCCCCCGCCCGCCGCCGCCCTTCCAGGCGCGGCGTCTGCAGGACCAGAG
CAACGCGGCTGCTCAGCCTCCACCCCCGTTCTCCTTCGGGAGGCTCGACC
CGGCGGCGGCCACGCCGGCGGCTCCGCGCACCGGCGAGCTTCTCCTGCGC
CTGGCGGAGGCTCTGCACGCCGTGGATGCCAGGCCCGCCCCTGTCGTGGA
GGGTGACTCCCGTGAGGTGGTGGCGCCGGCGGTGCCGGCGTCGCCACCGA
CACCACTGAACCACGCGGAGGTGGGCGGCGCGGGCGGAGCAGGGGCAAGC
GGGGACGCCGACGCCGGAACAGCGGAGGGTGGGGGTGAAGAGCGGCGAGC
AGTGTCGTCCTCGCCTATGAAAGACTTGGTGCTCGAAACGCCGCCGGCCC
TGACGGAGGGTAGTGGCGGGCCTGGTGGCGCTGCTGTGGGCGGAAGTGGT
GCCGAGGAACAGTACCTGGATCACGTGCTGGAGGCGCTCGTGCGCATCAG
AGGAATCGTCTTGCCTCGTATCAGGTGCGTGGGTTTGGGTTTGTGGGCCG
CGCGCGGGGGTGGTTTATTACAGTAGTTAAGTGAATGCTTGAAGGGCAAA
GCAATGAGTTCGTTGGCAAGAGAGCGCCGCCCAGTCTTGAGATGTGTGTC
GATCGGCGAAGTTGGTTGACAGGGAGCCTTGGTTTTGGTTCCGTTTGTTG
TTGCGGCGGCCGTCGCTGTATGTAATGCCACGCTTTCCTGGTTCTAGCCG
ACGTGCAGATTGTTCTTGTGCTTTGACAAATCACGACTTGTGTGTGGAGA
AAACGTGCTTGAGGGGTGGTTGCATTGTCTTTCACCTTGACGAACCGTGT
CGAACAAACATCGGTCTTCCAAATGTGTTGTCGGTTGACCGGAAATCCCC
CCCCCCCCCTCACCCTCGTTTTTTCAACCTATTTCACGCGCGCTCACGTC
TCCAGCGCAAATAACCTGTCGCGGGCTACCGAGATCCTCCAGCGACTGAC
CGGAATGCCGCCGTCAGCAGGCGCGTCTTGCCCCTCCACCTCTACGACCT
CGGCTGGGACGGGGGCGACGGGGACACGAGCGGCGGCGTCCGCCGCCGGT
GGTGGCGGCGGCGCGGGCTTGACGCCGGAGGCGCGCAAGCGCGCGTACTT
GCGGTCGTCGGTGCGCGTGCTTCGAAGAAATACTCACGCCCCGCAGTTGT
CGTCGGTGGCGGCGCCCCCGGCTCCTCAGAGTGTCGTCGGCGGCGGCGCC
AGCGGCGGTGGAGGTGGTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig7062:1536..3954- >mRNA_L-elsbetiae_contig7062.15867.1 ID=mRNA_L-elsbetiae_contig7062.15867.1|Name=mRNA_L-elsbetiae_contig7062.15867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2412bp|location=Sequence derived from alignment at L-elsbetiae_contig7062:1536..3954- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGTGCGAGTGCGAGTGCGAGTGCCGGTGCCGGTGTTGGGTCCAGCGG
CGGCCTTCGCGGCGCCCTGCGCTGCACCTCGCCGCGATCGCTCTTCCCGG
ACCACTGGCTGCTGAGGCTGATGTCGAGCCGCCAGTCGCCTTTGCTGAGG
ACGTTCACCGGCATGGTGATCGGCGCGCTGGCCGCGTTCAAGGGCCCCGG
CATCAGCAGGGAGTTGGCGGAGGTGGCGGCTCACCTGATGGGGGTGGTCG
GGGCCGAGGGGTCGGAGGCGGCGGGGCTGCAGGCGAGTGCGAGTGCGAGT
GCGAGTGCCGGTGCCGGTGTTGGGTCCAGCGGCGGCCTTCGCGGCGCCCT
GCGCTGCACCTCGCCGCGATCGCTCTTCCCGGACCACTGGCTGCTGAGGC
TGATGTCGAGCCGCCAGTCGCCTTTGCTGAGGACGTTCACCGGCATGGTG
ATCGGCGCGCTGGCCGCGTTCAAGGGCCCCGGCATCAGCAGGGAGTTGGC
GGAGGTGGCGGCTCACCTGATGGGGGTGGTCGGGGCCGAGGGGTCGGAGG
CGGCGGGGCTGCAGGCGTTGTCTCTCCTGGGCCGTCTCTGCTCCGGGATT
ACCACGGAACGGGAGTCGCAAGCGTACATGGAGCAGCGGGGGCTCCGCGG
GTTCCTGGCCGGGTCCGTGCTCCTCGAGGCGTTGTCTCTCCTGGGCCGTC
TCTGCTCCGGGATTACCACGGAACGGGAGTCGCAAGCGTACATGGAGCAG
CGGGGGCTCCGCGGGTTCCTGGCCGGGTCCGTGCTCCTCGAGGCGCGGCG
TCTGCAGGACCAGAGCAACGCGGCTGCTCAGCCTCCACCCCCGTTCTCCT
TCGGGAGGCTCGACCCGGCGGCGGCCACGCCGGCGGCTCCGCGCACCGGC
GAGCTTCTCCTGCGCCTGGCGGAGGCTCTGCACGCCGTGGATGCCAGGCC
CGCCCCTGTCGTGGAGGGTGACTCCCGTGAGGTGGTGGCGCCGGCGGTGC
CGGCGTCGCCACCGACACCACTGAACCACGCGGAGGTGGGCGGCGCGGGC
GGAGCAGGGGCAAGCGGGGACGCCGACGCCGGAACAGCGGAGGGTGGGGG
TGAAGAGCGGCGAGCAGTGTCGTCCTCGCCTATGAAAGACTTGGTGCTCG
AAACGCCGCCGGCCCTGACGGAGGGTAGTGGCGGGCCTGGTGGCGCTGCT
GTGGGCGGAAGTGGTGCCGAGGAACAGTACCTGGATCACGTGCTGGAGGC
GCTCGTGCGCATCAGAGGAATCGTCTTGCCTCGTATCAGGCGCGGCGTCT
GCAGGACCAGAGCAACGCGGCTGCTCAGCCTCCACCCCCGTTCTCCTTCG
GGAGGCTCGACCCGGCGGCGGCCACGCCGGCGGCTCCGCGCACCGGCGAG
CTTCTCCTGCGCCTGGCGGAGGCTCTGCACGCCGTGGATGCCAGGCCCGC
CCCTGTCGTGGAGGGTGACTCCCGTGAGGTGGTGGCGCCGGCGGTGCCGG
CGTCGCCACCGACACCACTGAACCACGCGGAGGTGGGCGGCGCGGGCGGA
GCAGGGGCAAGCGGGGACGCCGACGCCGGAACAGCGGAGGGTGGGGGTGA
AGAGCGGCGAGCAGTGTCGTCCTCGCCTATGAAAGACTTGGTGCTCGAAA
CGCCGCCGGCCCTGACGGAGGGTAGTGGCGGGCCTGGTGGCGCTGCTGTG
GGCGGAAGTGGTGCCGAGGAACAGTACCTGGATCACGTGCTGGAGGCGCT
CGTGCGCATCAGAGGAATCGTCTTGCCTCGTATCAGCGCAAATAACCTGT
CGCGGGCTACCGAGATCCTCCAGCGACTGACCGGAATGCCGCCGTCAGCA
GGCGCGTCTTGCCCCTCCACCTCTACGACCTCGGCTGGGACGGGGGCGAC
GGGGACACGAGCGGCGGCGTCCGCCGCCGGTGGTGGCGGCGGCGCGGGCT
TGACGCCGGAGGCGCGCAAGCGCGCGTACTTGCGGTCGTCGGTGCGCGTG
CTTCGAAGAAATACTCACGCCCCGCAGTTGTCGTCGGTGGCGGCGCCCCC
GGCTCCTCAGAGTGTCGTCGGCGGCGGCGCCAGCGGCGGTGGAGGTGGTC
GCAAATAACCTGTCGCGGGCTACCGAGATCCTCCAGCGACTGACCGGAAT
GCCGCCGTCAGCAGGCGCGTCTTGCCCCTCCACCTCTACGACCTCGGCTG
GGACGGGGGCGACGGGGACACGAGCGGCGGCGTCCGCCGCCGGTGGTGGC
GGCGGCGCGGGCTTGACGCCGGAGGCGCGCAAGCGCGCGTACTTGCGGTC
GTCGGTGCGCGTGCTTCGAAGAAATACTCACGCCCCGCAGTTGTCGTCGG
TGGCGGCGCCCCCGGCTCCTCAGAGTGTCGTCGGCGGCGGCGCCAGCGGC
GGTGGAGGTGGT back to top
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