mRNA_L-elsbetiae_contig706.15865.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig706.15865.1
Unique NamemRNA_L-elsbetiae_contig706.15865.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig706.15865.1 vs. uniprot
Match: A0A6H5KGG6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.500e-11
Identity = 50/127 (39.37%), Postives = 66/127 (51.97%), Query Frame = 3 
Query:   39 MASSLCGCWQSWPIRRTNRSEQEVSRGVSRKARRHIVKVRMPES-------------SRSEGGKPSATATEARKSTADTRSAIGLSSNPLEERAKGK-----KQQGRGGGDTGAAAVAVKIRRGGFF 365
            MA++L GCWQ WP+RR  RSE+E SRGVSRK +     +RMP               S S+GG    T++    S A   +  GL ++ + E + G       QQ   G    AAAVAVK+R+GG F
Sbjct:    1 MATTLSGCWQWWPMRRARRSERETSRGVSRKVKSRFTTIRMPAQVSSAGPAGRGRPHSPSDGGGGEETSSV---SCAALGAVAGLETDIIGESSGGAIGRHPSQQKEDGDSQSAAAVAVKVRKGGLF 124
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BLAST of mRNA_L-elsbetiae_contig706.15865.1 vs. uniprot
Match: D7G9G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.400e-10
Identity = 50/122 (40.98%), Postives = 62/122 (50.82%), Query Frame = 3 
Query:   39 MASSLCGCWQSWPIRRTNRSEQEVSRGVSRKARRHIVKVRMPESSRSEG----GKP-------SATATEARKSTADTRSAIGLSSNPLEERAKGK--KQQGRGGGDTGAAAVAVKIRRGGFF 365
            MA++  GCW  WP+RR  RSE+E  RGVSRK +     VRMP    S G    GKP       S    ++  S A   +  GL +    E + GK   QQ   G    AAAVAVK+R+GG F
Sbjct:    1 MATTFSGCWPWWPMRRARRSEREAPRGVSRKVKSRFTTVRMPAQVSSAGPAGGGKPHSPCGGGSGGEEKSSASYAAVGAVAGLETGRDGESSGGKHPSQQKDDGDSQPAAAVAVKVRKGGLF 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig706.15865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGG6_9PHAE9.500e-1139.37RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9G3_ECTSI2.400e-1040.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig706contigL-elsbetiae_contig706:22318..23220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig706.15865.1prot_L-elsbetiae_contig706.15865.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig706 22356..23220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.0239491-UTR-L-elsbetiae_contig706:22317..223551622816784.0239491-UTR-L-elsbetiae_contig706:22317..22355Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig706 22318..22355 +
1691683810.6127882-UTR-L-elsbetiae_contig706:22317..223551691683810.6127882-UTR-L-elsbetiae_contig706:22317..22355Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig706 22318..22355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.0371518-CDS-L-elsbetiae_contig706:22355..224321622816784.0371518-CDS-L-elsbetiae_contig706:22355..22432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 22356..22432 +
1691683810.6221387-CDS-L-elsbetiae_contig706:22355..224321691683810.6221387-CDS-L-elsbetiae_contig706:22355..22432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 22356..22432 +
1622816784.050628-CDS-L-elsbetiae_contig706:22619..228481622816784.050628-CDS-L-elsbetiae_contig706:22619..22848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 22620..22848 +
1691683810.6307213-CDS-L-elsbetiae_contig706:22619..228481691683810.6307213-CDS-L-elsbetiae_contig706:22619..22848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 22620..22848 +
1622816784.0647151-CDS-L-elsbetiae_contig706:23199..232201622816784.0647151-CDS-L-elsbetiae_contig706:23199..23220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 23200..23220 +
1691683810.6397016-CDS-L-elsbetiae_contig706:23199..232201691683810.6397016-CDS-L-elsbetiae_contig706:23199..23220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig706 23200..23220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig706.15865.1

>prot_L-elsbetiae_contig706.15865.1 ID=prot_L-elsbetiae_contig706.15865.1|Name=mRNA_L-elsbetiae_contig706.15865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MASSLCGCWQSWPIRRTNRSEQEVSRGVSRKARRHIVKVRMPESSRSEGG
KPSATATEARKSTADTRSAIGLSSNPLEERAKGKKQQGRGGGDTGAAAVA
VKIRRGGFF
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mRNA from alignment at L-elsbetiae_contig706:22318..23220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig706.15865.1 ID=mRNA_L-elsbetiae_contig706.15865.1|Name=mRNA_L-elsbetiae_contig706.15865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig706:22318..23220+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGGATGAGATCAGATAAGAACGAGTGCTGAAAAGGATGGCATCCTCG
CTATGCGGGTGCTGGCAGTCTTGGCCAATACGACGGACCAATCGCTCAGA
GCAGGAGGTTTCGAGGTGAGACACGCGTAGCCGGGATCTTCCTCGTTCTT
CTCGAGGCAAAAAAATATGACGGCGATAAAAAATATGTGCCTCGTGACGG
CGTCCCACCTCGATATACTTTTTATTTTTTTTGCTCCCTCAAGAAACATT
TGTCTGGTTTGTTTTCCCCCAAACATGCTCTCCAACTTTGATTATCGGGC
AGAGGAGTGAGCAGAAAGGCGAGGAGACATATAGTCAAGGTTAGGATGCC
TGAAAGCTCTCGGTCTGAAGGAGGAAAGCCCTCCGCTACGGCGACCGAAG
CTCGCAAATCCACAGCCGATACGAGAAGCGCAATCGGTTTAAGTAGCAAC
CCCTTGGAGGAGAGGGCGAAAGGCAAGAAGCAGCAGGGGCGGGGCGGTGG
TGACACAGGCGCAGCGGCTGTGGCTGTCAAGGTGTGTGGGTGTATCCCCT
TTCCCAGGTTCAACACAATAATTGGTTGCCGTGATACATACGTCCTACAA
CTACATAGAAGTACAATTTTGTGTATGTGGTAGACTAGAAATGCAAGAGT
AGACTATTTGCCTGCAGCTGGTGCAGATGTTTGAAAGTGCTTACGCCTGC
TTCACTGATAATAGCCCCTGCACACGGTGCCGACGCCCATCCGACGCCGC
CCGTCTCTTTATCTCTTGTCTCTTCGGAATCCCTGGATTATTTTCTCTCA
CCTGTCTCTCGCATCACCTGTCTCTCGCATTACACACCATTTTCCGCCTC
CTCGCCTGCCACTGCTTGGTCGTCGGGAACAGATACGGAGGGGTGGGTTC
TTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig706:22318..23220+

>mRNA_L-elsbetiae_contig706.15865.1 ID=mRNA_L-elsbetiae_contig706.15865.1|Name=mRNA_L-elsbetiae_contig706.15865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig706:22318..23220+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCATCCTCGCTATGCGGGTGCTGGCAGTCTTGGCCAATACGACGGAC
CAATCGCTCAGAGCAGGAGGTTTCGAGATGGCATCCTCGCTATGCGGGTG
CTGGCAGTCTTGGCCAATACGACGGACCAATCGCTCAGAGCAGGAGGTTT
CGAGAGGAGTGAGCAGAAAGGCGAGGAGACATATAGTCAAGGTTAGGATG
CCTGAAAGCTCTCGGTCTGAAGGAGGAAAGCCCTCCGCTACGGCGACCGA
AGCTCGCAAATCCACAGCCGATACGAGAAGCGCAATCGGTTTAAGTAGCA
ACCCCTTGGAGGAGAGGGCGAAAGGCAAGAAGCAGCAGGGGCGGGGCGGT
GGTGACACAGGCGCAGCGGCTGTGGCTGTCAAGAGGAGTGAGCAGAAAGG
CGAGGAGACATATAGTCAAGGTTAGGATGCCTGAAAGCTCTCGGTCTGAA
GGAGGAAAGCCCTCCGCTACGGCGACCGAAGCTCGCAAATCCACAGCCGA
TACGAGAAGCGCAATCGGTTTAAGTAGCAACCCCTTGGAGGAGAGGGCGA
AAGGCAAGAAGCAGCAGGGGCGGGGCGGTGGTGACACAGGCGCAGCGGCT
GTGGCTGTCAAGATACGGAGGGGTGGGTTCTTCATACGGAGGGGTGGGTT
CTTC
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