mRNA_L-elsbetiae_contig7056.15859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7056.15859.1
Unique NamemRNA_L-elsbetiae_contig7056.15859.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: D7FLK1_ECTSI (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.000e-32
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:    1 VVLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAVVGGQIADACKQHKEARAA 234
            VVLDVCCGAGTIGICAAA GGAK+VYGSDICLPAIEDARRNA ANG+ NCEF CGKAEAVV GQIA+A KQHK +  A
Sbjct:  487 VVLDVCCGAGTIGICAAAAGGAKQVYGSDICLPAIEDARRNALANGIDNCEFVCGKAEAVVAGQIANAFKQHKASLGA 564
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A1Y1IJ46_KLENI (C3H1-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJ46_KLENI)

HSP 1 Score: 78.2 bits (191), Expect = 2.500e-14
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 VVLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAVVGGQIADACKQHKEARAA 234
            ++ DVCCG GTIG+  A  G   +V G ++  PA+EDAR+NAE NG+ NCEF CGKAEAV+G  +A    Q   A AA
Sbjct:  696 LLFDVCCGTGTIGLTLA--GTVGKVVGIEMIAPAVEDARKNAELNGIRNCEFVCGKAEAVLGKLLARYASQVAPADAA 771
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A7S4L029_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L029_GUITH)

HSP 1 Score: 76.3 bits (186), Expect = 1.110e-13
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAVVGGQIADACKQH 216
            VLDVCCG GTIGIC A+G  A++V G ++C PAIEDA+ NAE N + NCEF  G+AE     QI  A  QH
Sbjct:  400 VLDVCCGTGTIGICIASG--ARKVIGIELCAPAIEDAKLNAERNKISNCEFLVGRAE----DQIDAAISQH 464
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: UPI001B8884AC (tRNA (uracil-5-)-methyltransferase homolog A-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8884AC)

HSP 1 Score: 72.4 bits (176), Expect = 2.070e-12
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 VVLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAVVGGQIADACKQH 216
            VVLD+CCG GTIG+C A    A +V G ++C  A+EDA+ NA+ NGV N EF CGK E ++ G +      H
Sbjct:  151 VVLDICCGTGTIGLCVAKK--ASKVIGFEMCKQAVEDAKANAQLNGVTNIEFHCGKVEDIINGVMKTVHMSH 220
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A8C4XHL9_ERPCA (tRNA (uracil(54)-C(5))-methyltransferase n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4XHL9_ERPCA)

HSP 1 Score: 70.1 bits (170), Expect = 1.620e-11
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAE 174
            VLDVCCG GTIGIC A     K+V G ++C  A++DAR NAE NG+ N EF CGKAE
Sbjct:  442 VLDVCCGTGTIGICLAKA--VKKVVGIELCQEAVQDARINAELNGLTNIEFHCGKAE 496
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: W5M3K3_LEPOC (tRNA (uracil(54)-C(5))-methyltransferase n=2 Tax=Lepisosteidae TaxID=7915 RepID=W5M3K3_LEPOC)

HSP 1 Score: 69.7 bits (169), Expect = 2.210e-11
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAV 180
            VLDVCCG GTIGIC A     K+V G ++C  A+EDA+ NA+ NG+ N EF CGKAE +
Sbjct:  451 VLDVCCGTGTIGICLAKS--VKKVIGIELCQEAVEDAKVNAQINGLSNIEFHCGKAEDI 507
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A6B0VEN3_IXORI (tRNA (uracil(54)-C(5))-methyltransferase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VEN3_IXORI)

HSP 1 Score: 69.3 bits (168), Expect = 2.970e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAE 174
            +LDVCCG GTIG+C AA     RVYG ++C  A+E+A+RNAEANG++N  F  G+AE
Sbjct:  448 LLDVCCGTGTIGLCMAAK--VARVYGVEVCKRAVENAKRNAEANGINNASFVLGRAE 502
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A498NJF0_LABRO (tRNA (uracil(54)-C(5))-methyltransferase n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NJF0_LABRO)

HSP 1 Score: 68.9 bits (167), Expect = 3.830e-11
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAV 180
            VLDVCCG GTIGI  A     K+V G ++C  A+EDA+ NAEANG+ N EF CGKAE V
Sbjct:  275 VLDVCCGTGTIGISLAKR--VKKVIGIELCQEAVEDAKSNAEANGLTNVEFHCGKAEDV 331
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A6S7KK43_PARCT (tRNA (uracil(54)-C(5))-methyltransferase (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KK43_PARCT)

HSP 1 Score: 68.9 bits (167), Expect = 3.990e-11
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 VVLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAEAVV 183
            ++LDVCCG GTIG+  A    AK+V G ++C  A+EDA+ NAE+NG+ N E+ CGKAE V+
Sbjct:  354 IILDVCCGTGTIGLSMAKQ--AKKVIGIELCQEAVEDAKFNAESNGLSNVEYHCGKAEDVI 412
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BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Match: A0A6P7VUZ0_IXOSC (tRNA (uracil(54)-C(5))-methyltransferase n=9 Tax=Ixodes TaxID=6944 RepID=A0A6P7VUZ0_IXOSC)

HSP 1 Score: 68.9 bits (167), Expect = 4.040e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    4 VLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNCEFKCGKAE 174
            +LDVCCG GTIG+C AA     RVYG ++C  A+E+A+RNAEANG+ N  F  G+AE
Sbjct:  403 LLDVCCGTGTIGLCMAAK--VARVYGVEVCKRAVENAKRNAEANGIRNASFVLGRAE 457
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7056.15859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK1_ECTSI1.000e-3283.33Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A1Y1IJ46_KLENI2.500e-1452.56C3H1-type domain-containing protein n=1 Tax=Klebso... [more]
A0A7S4L029_GUITH1.110e-1357.75Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
UPI001B8884AC2.070e-1248.61tRNA (uracil-5-)-methyltransferase homolog A-like ... [more]
A0A8C4XHL9_ERPCA1.620e-1161.40tRNA (uracil(54)-C(5))-methyltransferase n=2 Tax=P... [more]
W5M3K3_LEPOC2.210e-1157.63tRNA (uracil(54)-C(5))-methyltransferase n=2 Tax=L... [more]
A0A6B0VEN3_IXORI2.970e-1157.89tRNA (uracil(54)-C(5))-methyltransferase (Fragment... [more]
A0A498NJF0_LABRO3.830e-1161.02tRNA (uracil(54)-C(5))-methyltransferase n=1 Tax=L... [more]
A0A6S7KK43_PARCT3.990e-1154.10tRNA (uracil(54)-C(5))-methyltransferase (Fragment... [more]
A0A6P7VUZ0_IXOSC4.040e-1157.89tRNA (uracil(54)-C(5))-methyltransferase n=9 Tax=I... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7056contigL-elsbetiae_contig7056:754..2411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue5.2e-28
Seed eggNOG ortholog2880.D7FLK1
Preferred nameTRMT2A
KEGG koko:K15331,ko:K15332
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
EggNOG OGsCOG2265@1,KOG2187@2759
EC2.1.1.35
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.1404715-CDS-L-elsbetiae_contig7056:753..8251622816783.1404715-CDS-L-elsbetiae_contig7056:753..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 754..825 +
1691683809.9108894-CDS-L-elsbetiae_contig7056:753..8251691683809.9108894-CDS-L-elsbetiae_contig7056:753..825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 754..825 +
1622816783.150382-CDS-L-elsbetiae_contig7056:1420..15161622816783.150382-CDS-L-elsbetiae_contig7056:1420..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 1421..1516 +
1691683809.9308414-CDS-L-elsbetiae_contig7056:1420..15161691683809.9308414-CDS-L-elsbetiae_contig7056:1420..1516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 1421..1516 +
1622816783.160478-CDS-L-elsbetiae_contig7056:2204..24111622816783.160478-CDS-L-elsbetiae_contig7056:2204..2411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 2205..2411 +
1691683809.9430246-CDS-L-elsbetiae_contig7056:2204..24111691683809.9430246-CDS-L-elsbetiae_contig7056:2204..2411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7056 2205..2411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7056.15859.1prot_L-elsbetiae_contig7056.15859.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7056 754..2411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7056.15859.1

>prot_L-elsbetiae_contig7056.15859.1 ID=prot_L-elsbetiae_contig7056.15859.1|Name=mRNA_L-elsbetiae_contig7056.15859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
VVLDVCCGAGTIGICAAAGGGAKRVYGSDICLPAIEDARRNAEANGVHNC
EFKCGKAEAVVGGQIADACKQHKEARAAAAAAAEAATAEAKGEAKEAAVA
GAGAAAAPASTTAAASDDELKFAAV
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mRNA from alignment at L-elsbetiae_contig7056:754..2411+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7056.15859.1 ID=mRNA_L-elsbetiae_contig7056.15859.1|Name=mRNA_L-elsbetiae_contig7056.15859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1658bp|location=Sequence derived from alignment at L-elsbetiae_contig7056:754..2411+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGTGCTGGACGTGTGCTGCGGCGCCGGGACCATCGGCATCTGTGCCGC
CGCAGGAGGAGGGGCCAAGCGGGTGAGCACGTCCGCCCGCGAAGGCCTGC
CTGTGCGGCACCCAACTAATCCCCAGCCCAAATTTGGGGGCTGCACGATC
TCAAGCAGGATTTTCGTTTTCGTTTCTGTTGTGCCGCCACGTGCTCTGTT
GTACCCTGGTGTAGATAAAACGGTAGTCTACGCAGGTTTTGAGTCAGCAA
AACATATGGGATAAAGTATGGAATCGGAGGAATGGGGGGGGGGGTCGTGA
TTAGGGTCAGGATTAGGGTTACGGAACCCCCTCACTCTATTTGACATATG
AACCTGAATTTGGTGATTTTCTGCGCGTAGGCGGTCCAGATACAAAGCCG
AACCGGGTATGCCCGGTGTTGTCTCGCTCGGTTTGGAACGCCGTTTCCCC
TTCCGGTGCTCCGCGAGTAACGTGCGCTCAATGCTCTTGTGCGACGGTGA
ATTCCTGGTTTGGGAGGATGGGGGCTGAGCAGGGGGTTGCGGACAGGCTC
GCGCCCTAGCTAAATGCGTCGTGCGTATGTCTGTCTTTACCGTGGGCACT
TTGGATGACCGGATTTGTGTGTCCTGGTGCTCTCTTCGGCGTGTATCGTG
TCTGTGATCCCTGGCAGGTTTATGGATCGGACATTTGCCTCCCGGCCATC
GAGGATGCTCGCCGCAACGCCGAGGCTAACGGAGTCCACAACTGCGAGTT
CAAGTGCGGGAAGGTTAGTTAGACCCCCACCCCCCCCCCCCGCTCCCTCA
ATTTGTCGTACAGCACCCACCTCCCCCGTCCCATCGACGGAGTGCGCGAA
AAGTATTCTCCAGCAGGAAAAACATTCTCACTCTGTTCTCTGGCCCGCTG
GTGACCGGCGGTTTGAAAGTCACCCATGCTGGCTGTGTTTTGCGTCTCAG
CTTGACGAGTCTGATGCCCGGCTGTGCTGTTCTCGCCTGCTGGTTCTGTC
GGCGTTGAAACTGTTTAGGCACATGTAGCACCTTTGGTTTTCCTGCCAAA
GTTGATTGATGCGTACCGGCACACGGGCAGCGTTCGTCTCTTGCCTCTGA
CCAGGCCGACGAGGCGTGCCCACAGCCGAGCCGTTTCACGCCCCCGGCTC
ATGCCATGTTCTGGCGGTTTCGTACTGTAGTCCTTCCAAACGCTACGTTG
CATTCATTATTCACTGCGTCCATATTGTCTGTCGGCAGGAGCTTGCGTTG
GCTTCTCGGTAGCGAATGCCTCCTCGGCAGGATGTTGTGAGACGTCTGTT
CCTGGTGCAGAGGTGTGTTGCCACCTGCTGCTTCCCTCAGTGTGGCGTCG
ACGTTTTTTGCACTCCTGCCAATATCAGGTTATGCTGTTCGATGCCTCAC
CCACCCACGCTGCTTCGTTTCCGCGACCTGCGGTAAAACAAAAACCTTTA
GGCTGAGGCTGTGGTCGGTGGTCAGATCGCGGACGCCTGCAAGCAGCACA
AGGAAGCCCGTGCGGCAGCAGCGGCAGCAGCAGAAGCAGCGACAGCAGAA
GCGAAGGGAGAAGCAAAGGAGGCAGCAGTTGCCGGCGCCGGCGCGGCAGC
AGCACCAGCTTCCACCACCGCTGCTGCGTCTGATGACGAACTCAAGTTTG
CCGCCGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7056:754..2411+

>mRNA_L-elsbetiae_contig7056.15859.1 ID=mRNA_L-elsbetiae_contig7056.15859.1|Name=mRNA_L-elsbetiae_contig7056.15859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig7056:754..2411+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGTGCTGGACGTGTGCTGCGGCGCCGGGACCATCGGCATCTGTGCCGC
CGCAGGAGGAGGGGCCAAGCGGGTAGTGCTGGACGTGTGCTGCGGCGCCG
GGACCATCGGCATCTGTGCCGCCGCAGGAGGAGGGGCCAAGCGGGTTTAT
GGATCGGACATTTGCCTCCCGGCCATCGAGGATGCTCGCCGCAACGCCGA
GGCTAACGGAGTCCACAACTGCGAGTTCAAGTGCGGGAAGGTTTATGGAT
CGGACATTTGCCTCCCGGCCATCGAGGATGCTCGCCGCAACGCCGAGGCT
AACGGAGTCCACAACTGCGAGTTCAAGTGCGGGAAGGCTGAGGCTGTGGT
CGGTGGTCAGATCGCGGACGCCTGCAAGCAGCACAAGGAAGCCCGTGCGG
CAGCAGCGGCAGCAGCAGAAGCAGCGACAGCAGAAGCGAAGGGAGAAGCA
AAGGAGGCAGCAGTTGCCGGCGCCGGCGCGGCAGCAGCACCAGCTTCCAC
CACCGCTGCTGCGTCTGATGACGAACTCAAGTTTGCCGCCGTCGCTGAGG
CTGTGGTCGGTGGTCAGATCGCGGACGCCTGCAAGCAGCACAAGGAAGCC
CGTGCGGCAGCAGCGGCAGCAGCAGAAGCAGCGACAGCAGAAGCGAAGGG
AGAAGCAAAGGAGGCAGCAGTTGCCGGCGCCGGCGCGGCAGCAGCACCAG
CTTCCACCACCGCTGCTGCGTCTGATGACGAACTCAAGTTTGCCGCCGTC
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