mRNA_L-elsbetiae_contig7053.15856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7053.15856.1
Unique NamemRNA_L-elsbetiae_contig7053.15856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7053.15856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7053contigL-elsbetiae_contig7053:649..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size600
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.9263825-UTR-L-elsbetiae_contig7053:648..6561622816782.9263825-UTR-L-elsbetiae_contig7053:648..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7053 649..656 +
1691683809.7545748-UTR-L-elsbetiae_contig7053:648..6561691683809.7545748-UTR-L-elsbetiae_contig7053:648..656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7053 649..656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.9377303-CDS-L-elsbetiae_contig7053:656..12561622816782.9377303-CDS-L-elsbetiae_contig7053:656..1256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 657..1256 +
1691683809.7673604-CDS-L-elsbetiae_contig7053:656..12561691683809.7673604-CDS-L-elsbetiae_contig7053:656..1256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7053 657..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7053.15856.1prot_L-elsbetiae_contig7053.15856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7053 657..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7053.15856.1

>prot_L-elsbetiae_contig7053.15856.1 ID=prot_L-elsbetiae_contig7053.15856.1|Name=mRNA_L-elsbetiae_contig7053.15856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=200bp
MSPPDSAWSPPILPRLGPSLLPCSDREYGTSISPTKLPCSKQESADVVFP
AVFTVSFSNVSSSKLSSKRSSSVRPVSGAPTSEDDPRSVGDGFCAVTAVA
ATPALNAPFSPAHSVAATSVRGKLCAPTSVKPTLFRSDTTSSTAESVAAA
TATAASFDAASFNSVLASDLFRRPSFGALSNSDVEPSCAEALLVFPNTST
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mRNA from alignment at L-elsbetiae_contig7053:649..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7053.15856.1 ID=mRNA_L-elsbetiae_contig7053.15856.1|Name=mRNA_L-elsbetiae_contig7053.15856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=608bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:649..1256+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTGTAATGTCTCCGCCTGACTCAGCTTGGTCTCCGCCGATATTACCG
AGGTTAGGCCCCTCGCTGTTGCCTTGCTCGGACAGGGAATACGGGACATC
GATTTCTCCGACGAAACTGCCGTGTTCTAAACAAGAATCGGCGGATGTGG
TGTTTCCCGCAGTTTTCACGGTCTCGTTCTCGAACGTGTCGTCTTCAAAG
CTTTCCTCGAAGCGGTCTTCTAGTGTTCGGCCAGTGAGTGGCGCTCCCAC
CTCTGAAGACGACCCTCGCTCCGTGGGTGACGGGTTCTGCGCCGTGACCG
CGGTCGCCGCCACCCCCGCACTGAACGCTCCCTTTTCTCCAGCACATTCG
GTTGCAGCCACTTCCGTGCGAGGAAAATTGTGCGCTCCGACCTCGGTAAA
GCCGACCTTGTTTCGCTCTGACACAACAAGCTCTACGGCCGAATCTGTAG
CTGCTGCCACTGCTACCGCCGCTAGCTTTGATGCCGCTAGTTTTAATTCC
GTGCTCGCTTCAGACTTATTCCGTAGGCCTTCCTTTGGAGCTTTGTCGAA
CTCGGACGTGGAACCCTCATGTGCGGAAGCACTTCTTGTGTTTCCCAACA
CATCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7053:649..1256+

>mRNA_L-elsbetiae_contig7053.15856.1 ID=mRNA_L-elsbetiae_contig7053.15856.1|Name=mRNA_L-elsbetiae_contig7053.15856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1200bp|location=Sequence derived from alignment at L-elsbetiae_contig7053:649..1256+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCCGCCTGACTCAGCTTGGTCTCCGCCGATATTACCGAGGTTAGG
CCCCTCGCTGTTGCCTTGCTCGGACAGGGAATACGGGACATCGATTTCTC
CGACGAAACTGCCGTGTTCTAAACAAGAATCGGCGGATGTGGTGTTTCCC
GCAGTTTTCACGGTCTCGTTCTCGAACGTGTCGTCTTCAAAGCTTTCCTC
GAAGCGGTCTTCTAGTGTTCGGCCAGTGAGTGGCGCTCCCACCTCTGAAG
ACGACCCTCGCTCCGTGGGTGACGGGTTCTGCGCCGTGACCGCGGTCGCC
GCCACCCCCGCACTGAACGCTCCCTTTTCTCCAGCACATTCGGTTGCAGC
CACTTCCGTGCGAGGAAAATTGTGCGCTCCGACCTCGGTAAAGCCGACCT
TGTTTCGCTCTGACACAACAAGCTCTACGGCCGAATCTGTAGCTGCTGCC
ACTGCTACCGCCGCTAGCTTTGATGCCGCTAGTTTTAATTCCGTGCTCGC
TTCAGACTTATTCCGTAGGCCTTCCTTTGGAGCTTTGTCGAACTCGGACG
TGGAACCCTCATGTGCGGAAGCACTTCTTGTGTTTCCCAACACATCGACG
ATGTCTCCGCCTGACTCAGCTTGGTCTCCGCCGATATTACCGAGGTTAGG
CCCCTCGCTGTTGCCTTGCTCGGACAGGGAATACGGGACATCGATTTCTC
CGACGAAACTGCCGTGTTCTAAACAAGAATCGGCGGATGTGGTGTTTCCC
GCAGTTTTCACGGTCTCGTTCTCGAACGTGTCGTCTTCAAAGCTTTCCTC
GAAGCGGTCTTCTAGTGTTCGGCCAGTGAGTGGCGCTCCCACCTCTGAAG
ACGACCCTCGCTCCGTGGGTGACGGGTTCTGCGCCGTGACCGCGGTCGCC
GCCACCCCCGCACTGAACGCTCCCTTTTCTCCAGCACATTCGGTTGCAGC
CACTTCCGTGCGAGGAAAATTGTGCGCTCCGACCTCGGTAAAGCCGACCT
TGTTTCGCTCTGACACAACAAGCTCTACGGCCGAATCTGTAGCTGCTGCC
ACTGCTACCGCCGCTAGCTTTGATGCCGCTAGTTTTAATTCCGTGCTCGC
TTCAGACTTATTCCGTAGGCCTTCCTTTGGAGCTTTGTCGAACTCGGACG
TGGAACCCTCATGTGCGGAAGCACTTCTTGTGTTTCCCAACACATCGACG
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