mRNA_L-elsbetiae_contig7047.15848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7047.15848.1
Unique NamemRNA_L-elsbetiae_contig7047.15848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7047.15848.1 vs. uniprot
Match: D8LDX7_ECTSI (Serine/threonine-protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 3.700e-38
Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 3 
Query:   84 SMSVSGSEKVRLQQLEGVLDEKERVVLALQQEVKRLTYELTSEDTSEIQKSAHPLEPVIHLVGDTKTKYHAIGRRVSMATASALEGLPPMQRRDSMARKM 383
            S S  G ++ RLQ+LEGVLD+KE+ VLALQ+EVKRLT ELTS  + E+QKSAHPLEPVIHLVGD+KTK++AIGRRVSMATASALE L PMQRRDSMARKM
Sbjct:    4 SSSQEGRQQERLQELEGVLDDKEQAVLALQKEVKRLTRELTSGGSGEVQKSAHPLEPVIHLVGDSKTKHYAIGRRVSMATASALEDLAPMQRRDSMARKM 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7047.15848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDX7_ECTSI3.700e-3877.00Serine/threonine-protein phosphatase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7047contigL-elsbetiae_contig7047:1241..4768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue3.6e-32
Seed eggNOG ortholog2880.D8LDX7
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionSerine/threonine protein phosphatase catalytic subunit
Ec32 orthologEc-23_003430.1
Exons4
Model size385
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7047.15848.1prot_L-elsbetiae_contig7047.15848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7047 1241..4682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.231262-CDS-L-elsbetiae_contig7047:1240..13221622816782.231262-CDS-L-elsbetiae_contig7047:1240..1322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 1241..1322 -
1691683809.1107244-CDS-L-elsbetiae_contig7047:1240..13221691683809.1107244-CDS-L-elsbetiae_contig7047:1240..1322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 1241..1322 -
1622816782.2433124-CDS-L-elsbetiae_contig7047:3151..32731622816782.2433124-CDS-L-elsbetiae_contig7047:3151..3273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 3152..3273 -
1691683809.1304824-CDS-L-elsbetiae_contig7047:3151..32731691683809.1304824-CDS-L-elsbetiae_contig7047:3151..3273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 3152..3273 -
1622816782.2563903-CDS-L-elsbetiae_contig7047:3736..38051622816782.2563903-CDS-L-elsbetiae_contig7047:3736..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 3737..3805 -
1691683809.139134-CDS-L-elsbetiae_contig7047:3736..38051691683809.139134-CDS-L-elsbetiae_contig7047:3736..3805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 3737..3805 -
1622816782.267196-CDS-L-elsbetiae_contig7047:4658..46821622816782.267196-CDS-L-elsbetiae_contig7047:4658..4682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 4659..4682 -
1691683809.1481802-CDS-L-elsbetiae_contig7047:4658..46821691683809.1481802-CDS-L-elsbetiae_contig7047:4658..4682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7047 4659..4682 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.2770536-UTR-L-elsbetiae_contig7047:4682..47681622816782.2770536-UTR-L-elsbetiae_contig7047:4682..4768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7047 4683..4768 -
1691683809.1583493-UTR-L-elsbetiae_contig7047:4682..47681691683809.1583493-UTR-L-elsbetiae_contig7047:4682..4768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7047 4683..4768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7047.15848.1

>prot_L-elsbetiae_contig7047.15848.1 ID=prot_L-elsbetiae_contig7047.15848.1|Name=mRNA_L-elsbetiae_contig7047.15848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
MSVSGSEKVRLQQLEGVLDEKERVVLALQQEVKRLTYELTSEDTSEIQKS
AHPLEPVIHLVGDTKTKYHAIGRRVSMATASALEGLPPMQRRDSMARKM
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mRNA from alignment at L-elsbetiae_contig7047:1241..4768-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7047.15848.1 ID=mRNA_L-elsbetiae_contig7047.15848.1|Name=mRNA_L-elsbetiae_contig7047.15848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3528bp|location=Sequence derived from alignment at L-elsbetiae_contig7047:1241..4768- (Laminarionema elsbetiae ELsaHSoW15)
GATAACACAGACCTGGCCCCCATACGTCTCCGACATTGCCTCGGACAGGA
GAAGCAGCAGGGGCACCTGGGGATCCAGGTTGAAGCATGAGTGTGTCGGG
CTCCGAGAAGGTAAAGCATATTTAGAGAGATGCCGCCGACAGAGCCTCTA
GACTATGTCTAGAAGATACACTTCATTATCAGCAGATAAATAGCCCAGAG
GACTCCTGTCGGTGTAGACCCATAGTCTATATGTAGGTTTATCTAAAACA
TCATTCATAGTTACGACACAGAGAGAGGACCTGGGTGTTTTTTCTCCACG
CGCTCGGGGTCGCACAACGGCAGGTTCTCCCCTCTTCTGCCAGCCCGAGG
CCACGCCTGATGACACACATATCGTGGGCAACACAGCCATAGGTCTCCGC
ATAGCCAAGTGTCTCGGCGGAGGGAGAAAATGTGTTAATAAGTTACACAC
ATGAGCACGTGCTTGAATAATCGACTGGCACGGCCCCCGAAGCTGTGGTG
GAAGCTGAGGTGCCAGTTTACATCTAAGCTATGTATCTAGACTATCTATC
TAGATATTATTATGTACTTCCAGAGATGCTTGGCCGCTGCCACATGTTGT
TTGCCTTTGCCTGCATAATTAACAACAGCTGATAGAACGCATTTACCCAC
TGCAGCAGCTGGTATCCTTTTCTTGGAGAAGGACGTGAGGGTGGGGCGCA
CTCGTATACTGGTGTGTAGAACATGTGTAAGGAACGTGGTACAGTGAACA
GATCCCCCCGTTGTACCTAGATACGTATGTAGGCTATCCGGACATATCTA
GACTATGTATGTAGGGAAGATATCAAGATATTGGGCGCACAGCTCTGTAC
TGTCTGTAGATATAGCTTTTACTATTGACCCGCATCTCCCCGGCCATTTC
TATTCAGCAAACATAACAACGTAACATTGTCCGTCGGCTGCACATTGTTC
TGTTGGGCTCCAGGTACGGCTTCAGCAGCTTGAAGGGGTCCTTGATGAAA
AGGAAAGGGTCGTGTTGGCACTACAGCAAGAGGTGGGTGGGTGGGTCTTT
CTTGTAGACGCATGTTTCTCTCGGGTGCGAAAGGAGCATGCGCTTGGCAG
GGGGACAAGCGGTTGTACATACCTTTTTTGTGGGCTTGTCCACATAAGGA
TTGCGCTTTCGGCCAAAAAAAAAATATACAAGTATATTTCTCAACAAACC
AGGAAAGCCCCTCCCCCCCTAGGAACATGAATGGAAGAAAGCAATAAAAG
ACCCGGCGTGAACGATCATTCATAAATTAAGGGGGGCAACTTGCCCATGG
TTCTGGTGGTTCATGCGCACAGCGAGGGTTCGATCGGGAATCGGTGTTCC
CTTTCCGGAGCGTGTGACGAGTCAAATTGGCACCATACGTCGCAACATCG
AAGACGGCAATTTCGATTACCTCGCTCGGCGGTCGAGGGCACCTCCGACC
GTATCGTCTCGCTTGTACGTTTGGATGTACACCTCTCTTGGACAGGTGAA
GCGGTTGACGTACGAGCTCACATCGGAAGACACGAGCGAGATCCAGAAGT
CTGCACACCCCCTCGAGCCGGTGATCCACCTCGTGGGGGATACGAAGACC
AAGTACCATGCCATTGGGTGAGCAACCGTGGAAAGGGAAAAAAACATAGG
TACTCGTACAAGTGTCTTTACTACCGGCCTGTTCCGGAACAGGAGTGGAG
TGGGAGGGCTTGACCCAAGCCTGAAAAGTCATAAATACTGGAAAAATTGC
CCCGAGTTTTTAATCAGATGCTACACACAGCAGTAATTGCAAGTACAATG
TAGATATGTAGATATGTGGTGTGGACCGCTCTTCGAAATAGGCTTATCAC
AGCGCTTCGATGGAAAGCCAGCGGCCCCTTCTTCTACTTTGCAGCTTCGT
CGTCCTTCCCCTCGTCGTTCCCCTTCATCGTTCCCCCTAGCTTTCGTCTC
CGTAGTCTGCTTCCATGATCATGACGCGCATCCGCGGTTGACAGAACAAG
GCCGTTAGCTTTTTCGGCGTTAACCGAGCGGTCGTGATTTCTTTCAAGAC
TTAGATATGTAGTAAAAAAACAATCTACTATCTATGTCGCACTGAAAAAA
ATCATTGTACATAAGTATCTTCTGTTCTCGACGTTTCCTATCCCGTCATG
CTTTCAGGGAGATGCGGACTACCGCACTTATTTCGTGCAAGACTAGAACA
ACAACGTACTGTAGTATCACTGAAAAAAAACATTTCGAGTATCTTCTCTT
CGCGACGTTTTATATCCCGTCATGCTTTCAGGGAGATGCGGACTACCGCA
CTCCCCTCTGATTCCCCACCCCCAATTGCTCCTCCGTTCTCACCTGCTTT
TCGGCGAAAAAACACGATTCCCGTGTTTGTTTTCGGAAAACGAAAATAAA
CCTTCCCCCAATCCACGACTTCTTCCTACGGTTCTTGGAGTTGCACATAT
TCCCTCCACCTCCTAGTTTTTTGTAGGTGGGGTCTTGTTGTGATTTTGGC
GTGACTGCAGACCAAAAGTACCTGTTTTTGCAACCGAAAACGCTATATTC
CTTAGATATTTGTACGCAGGGTGTGTACCATGAGAGACGAGCGCTCTGTG
CAGTTTTTCGCTCAACTGCCATACTCTTTGTTTGTTTGCATGTTGGGGTG
TGTGTTTGTCGTGGGCAAACCCTGCGCAATGCGGAGCAGGTCTCGCGGCA
AAACAAAAAAACACTGCTGTATTGAATTGATAATTCGCCCACGGAGACAC
GTCAATATGGGGAGGTCCTTTCTTCGATTTATTTTGGTTTTGTTTCAAAG
ACGCGCATGCATCGCTGCACGCATGTGCGTGCTGTAGTGCGGCACCGCGA
GCTTCGGCGGTTCTCTAAGGAGGTACGTGCGCCCTCAGGGTCCAGGAATC
TTTCGGAGCGTGAAAGGCGTTGGCGTGTACTTGGTTGTTGTTGTTGTTGT
TTCTGTTCTTCCGACCTATACCCCTCTTCTTTTATTTTTATGATGGGGGA
TCGGCATCATCGGAGTCAGCAGGGGCCAAGCACCCCCACGTGCTGTCCCG
CCGCCCCCTTTCCTCCTGCTGAGCTGCTGCTCGTATGTTTTGTCCATCAC
GGTTTATTGCGGGAGTCCTAGAGAGCGTATACAGGAGGGACTGCTGTGAG
TGCTGTGTGCGCAAACAAAAAGCATTCTCCGCGGTTAGCGCTGCCCAAAA
AATTAGCATTCCCCCCTATAAGCGATTGCCCCTCACCCCCCCCCAGGGGG
TTATTTCAAAATTAAAAAAAGCCCCCCGTCCCCAGGGGGGGGATCAGAAG
GGGACTACGGCAGTCTAGTTGGTATAGCAAAAGCGTTCGGTTGTCCGCGC
TGGAAGTAGAGACGGCACACGCTTTTCGCGATGCTCGCACTTACGACAAT
TTCGAAAAGCTCGCACTTACGCCAATTTCCTCGGCGCTGCTTGCAGGCGA
CGGGTAAGCATGGCGACCGCCTCGGCGCTGGAGGGGCTGCCGCCGATGCA
GAGGCGAGATTCCATGGCGAGAAAGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7047:1241..4768-

>mRNA_L-elsbetiae_contig7047.15848.1 ID=mRNA_L-elsbetiae_contig7047.15848.1|Name=mRNA_L-elsbetiae_contig7047.15848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig7047:1241..4768- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGTGTCGGGCTCCGAGAAGATGAGTGTGTCGGGCTCCGAGAAGGT
ACGGCTTCAGCAGCTTGAAGGGGTCCTTGATGAAAAGGAAAGGGTCGTGT
TGGCACTACAGCAAGAGGTACGGCTTCAGCAGCTTGAAGGGGTCCTTGAT
GAAAAGGAAAGGGTCGTGTTGGCACTACAGCAAGAGGTGAAGCGGTTGAC
GTACGAGCTCACATCGGAAGACACGAGCGAGATCCAGAAGTCTGCACACC
CCCTCGAGCCGGTGATCCACCTCGTGGGGGATACGAAGACCAAGTACCAT
GCCATTGGGTGAAGCGGTTGACGTACGAGCTCACATCGGAAGACACGAGC
GAGATCCAGAAGTCTGCACACCCCCTCGAGCCGGTGATCCACCTCGTGGG
GGATACGAAGACCAAGTACCATGCCATTGGGCGACGGGTAAGCATGGCGA
CCGCCTCGGCGCTGGAGGGGCTGCCGCCGATGCAGAGGCGAGATTCCATG
GCGAGAAAGATGGCGACGGGTAAGCATGGCGACCGCCTCGGCGCTGGAGG
GGCTGCCGCCGATGCAGAGGCGAGATTCCATGGCGAGAAAGATG
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