mRNA_L-elsbetiae_contig7046.15847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7046.15847.1
Unique NamemRNA_L-elsbetiae_contig7046.15847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 2.430e-105
Identity = 178/230 (77.39%), Postives = 198/230 (86.09%), Query Frame = 1 
Query:    1 DNERCKTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSE------SFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPVR 672
            D  R + AQTINMFR GEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVE GDD ERDRV+LMLMESEDIKRF LGHE+AS  VP RHSHP MVH IESSGAVVDMDM+T LMNQ L ++GCDF+PLLIAEEK+        + +YRE S+ CRLELPSF+GMPT+DT+ VLV+E+FW+KSQAR+AVSFLAV+QMLEKG I+  LNP R
Sbjct:  636 DFGRSRMAQTINMFRAGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDRERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLIAEEKSGPCEAPFGAMMYREPSFKCRLELPSFMGMPTIDTA-VLVDEHFWSKSQARAAVSFLAVVQMLEKGYIDERLNPTR 864
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 1.310e-98
Identity = 170/224 (75.89%), Postives = 186/224 (83.04%), Query Frame = 1 
Query:    1 DNERCKTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPVR 672
            D  R + AQTINMFR GEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVE GDDMERDRV+LMLMESEDIKRF LGHE+AS  VP RHSHP MVH IESSGAVVDMDM+T LMNQ L ++GCDF+PLLI                 CRLELPSF+GMPT+DT+ +L +E+FW+KSQARSAVSFLAV+QMLEKG I+  LNP R
Sbjct:  432 DFGRSRMAQTINMFRAGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEDGDDMERDRVSLMLMESEDIKRFQLGHEKASVRVPLRHSHPNMVHHIESSGAVVDMDMATPLMNQALSAVGCDFHPLLI-----------------CRLELPSFMGMPTIDTA-MLADEHFWSKSQARSAVSFLAVVQMLEKGYIDKRLNPTR 637
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 223 bits (567), Expect = 1.850e-63
Identity = 117/191 (61.26%), Postives = 142/191 (74.35%), Query Frame = 1 
Query:   94 IDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNP 666
            IDVPECNLV++MDKIK SRSLIHTRGRARSKGGKFVIMVE  D  ER+R+  +L ESE+IK+F LG E+ S  VP R +HP MVH IE SGAVVDMDM+T L+ +TL + GCDF PLL+ E+    +      S+ CRLELPSFL M T+DT  +   E F TKS+ARSA  +LA+L+MLEKG ++  LNP
Sbjct:    1 IDVPECNLVIAMDKIKNSRSLIHTRGRARSKGGKFVIMVEDQDQAERERILQILRESENIKKFQLGSEKPSLRVPLRQAHPNMVHRIERSGAVVDMDMATCLLFETLSTTGCDFQPLLVVEDSIQPA------SFKCRLELPSFLDMGTIDTDSI-PGERFSTKSEARSAACYLALLKMLEKGYLDERLNP 184
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A4D9CT29_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT29_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.070e-21
Identity = 76/228 (33.33%), Postives = 120/228 (52.63%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARS-KGGKFVIM------VEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLG-SMGCDFYPLLIAEEKTSESFVYREK-SYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPVR 672
            K  + I  F  G+++ILV TD  SEGIDVP+C+LVV+ D +  S + +  RGRAR   GG FV+       +EK  D+E+   A+   + +D++  +L  +  S    F HS P+  + + ++GA + ++ S +L+NQ    +  C  Y LL   E  SE  V RE   + C L LP   G+P  ++S       F  K  AR+  ++ A ++    G ++ + NPVR
Sbjct:  451 KYKRAIEEFASGKLKILVATDVLSEGIDVPDCSLVVAFDTVANSTAFVQMRGRARQHNGGAFVLFASDQGGLEKLFDLEQG-AAIFEKDVDDMEMSYLERKDMS----FAHSFPQFSYAVPATGATITLNNSISLLNQLCQWNKDCVSYQLLPTVEY-SERVVSREGVMFKCLLTLPDVFGLPVFESSF------FPAKLIARAVAAYHACIEFHRCGFVDDDFNPVR 666
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A3F2RT86_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RT86_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.540e-20
Identity = 67/228 (29.39%), Postives = 109/228 (47.81%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHT----------IESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPV 669
            K   T++ F  G V+ILV+T    EG+D P+C L+V +D+I T R L+  +GRAR + G    + E+GD         ++ E E I +     E+   +       PR V            IES+GAV+D+D S   +NQ      C   P  +    + + +   E  Y  +L   + L +P     +   +    +KS AR+A +F A  ++L++GL++ +LN V
Sbjct:  348 KMESTLSKFESGAVRILVSTAVSVEGVDFPQCGLIVVLDRIGTGRMLMQLKGRARHEDGIVYYLAEEGDLAHHVHYEQLVREGEVINKLEFSREKVETI----QQQPRSVAAQMMGEMYKIEIESTGAVLDLDSSIPCINQF-----CQSLPDKLFTVNSKKLYTTSENRYGSKLLFVAELNLPPELNLESFCSTPMTSKSSARAAAAFSACQKLLDEGLLDDSLNSV 566
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A662WV63_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WV63_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.880e-19
Identity = 64/229 (27.95%), Postives = 107/229 (46.72%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHT-----------IESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPV 669
            K   T+  F  G V++L++T    EG+D P+C L+V MD++ TSR L+  +GRAR + G    + E+GD         ++ E E I R     E+   +       PR V             +ES+GAV+D+D S A +NQ      C   P  +        +   E  +  R    + L +P     +   ++   +KS AR++ +F    ++LE+GL++ +LN +
Sbjct:  476 KMETTLARFESGAVRVLISTAVSVEGVDFPQCGLIVIMDRVGTSRMLMQLKGRARHEDGIVYYLGEEGDLGHHVHFQQLVREGEMINRLEFSREKVETI----QQQPRSVSAQMLGSDDQKIELESTGAVLDLDSSIACVNQF-----CQSLPAKLFTVNAKRMYTVTENRFGSRTMFVAQLNLPVELELEPFKSDPMPSKSAARASAAFRGCQKLLEQGLLDDSLNSI 695
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: G4Z716_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z716_PHYSP)

HSP 1 Score: 94.4 bits (233), Expect = 1.200e-18
Identity = 61/229 (26.64%), Postives = 110/229 (48.03%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMVHT-----------IESSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPV 669
            K   T+  F  G +++L++T    EG+D P+C L+V MD++ TSR L+  +GRAR + G    + E+GD         ++ E+E I +    HER   +       PR +             IES+GAV+D+D S   +NQ      C   P  +        + + E+ Y  +    + L +P     +   ++   +K+ A+++ +F A  ++LE+ L++ +LN +
Sbjct:  472 KMETTLRKFESGSIRVLISTAVSVEGVDFPQCGLIVVMDRVGTSRMLMQLKGRARHEDGIVYYLAEEGDLAHEVYYKQLVREAETINQLEFSHERVETI----QQQPRSIAAQMMGNGEQKIEIESTGAVLDLDSSIVCINQF-----CQSLPSRLYTVDVKRLYSFSEERYGGKSMFTAELNLPIELELEAFRSDPMPSKAGAKASAAFSACQKLLEQQLLDESLNSI 691
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: W2PDL1_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PDL1_PHYPN)

HSP 1 Score: 94.0 bits (232), Expect = 1.640e-18
Identity = 67/230 (29.13%), Postives = 113/230 (49.13%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMV---------HTIE--SSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKS-YMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPV 669
            K   T+  F  G +++LV+T    EG+D P+C L++ MD++ T+R L+  +GRAR + G    + E+GD         +  E+E I +     E+   +       PR V         HTIE  S+GAV+D+D S A +NQ   S+    + + +    T     Y  KS +   L LP  L + T  +  +       +K+ AR++ +F A  ++L++ LI+ +LN +
Sbjct:  475 KMETTLTKFEAGSIRVLVSTAVSVEGVDFPQCGLIIVMDRVGTARKLVQLKGRARHEDGVVYYLAEEGDLGHEVFYKQLTREAEVIDQLEFSREKVETI----QQQPRSVAAEMMGAGDHTIEIASTGAVLDLDSSIACINQFCQSLPTRLFTVDVKRLYTITEARYGGKSLFTAELNLPMELELETFRSDPMP------SKASARASAAFSACQKLLDQQLIDDSLNSI 694
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A0W8CPN9_PHYNI (Nuclear export mediator factor NEMF n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CPN9_PHYNI)

HSP 1 Score: 94.0 bits (232), Expect = 1.900e-18
Identity = 67/230 (29.13%), Postives = 113/230 (49.13%), Query Frame = 1 
Query:   16 KTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHERASNLVPFRHSHPRMV---------HTIE--SSGAVVDMDMSTALMNQTLGSMGCDFYPLLIAEEKTSESFVYREKS-YMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNPV 669
            K   T+  F  G +++LV+T    EG+D P+C L++ MD++ T+R L+  +GRAR + G    + E+GD         +  E+E I +     E+   +       PR V         HTIE  S+GAV+D+D S A +NQ   S+    + + +    T     Y  KS +   L LP  L + T  +  +       +K+ AR++ +F A  ++L++ LI+ +LN +
Sbjct: 1556 KMETTLTKFEAGSIRVLVSTAVSVEGVDFPQCGLIIVMDRVGTARKLVQLKGRARHEDGVVYYLAEEGDLGHEVFYKQLTREAEVIDQLEFSREKVETI----QQQPRSVAAEMMGAGDHTIEIASTGAVLDLDSSIACINQFCQSLPTRLFTVDVKRLYTITEARYGGKSLFTAELNLPMELELETFRSDPMP------SKASARASAAFSACQKLLDQQLIDDSLNSI 1775
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BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Match: A0A2Z6QQ33_9GLOM (Dicer-like protein 1 n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QQ33_9GLOM)

HSP 1 Score: 93.2 bits (230), Expect = 3.420e-18
Identity = 65/223 (29.15%), Postives = 113/223 (50.67%), Query Frame = 1 
Query:   25 QTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSRSLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRF--HLGHERASNL------VPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLGSMGCD-FYPLLIAEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARSAVSFLAVLQMLEKGLINTNLNP 666
            +TIN FR G++ +L+ T+   EG+D+  CN+V+  D   T R+ I +RGRAR K  K+++M+EK +  E+  +  M    +D+K +   L  +R   +                 +    +GA++  + + +L+N     +  D F P+L  + K    F+     + CRL LPS    P  +     V+E   ++S+++ A +F A LQ+LEK  +N +L P
Sbjct:  434 KTINKFRDGKINLLIATNVAEEGLDIQPCNVVIRFDFFNTLRAYIQSRGRARRKDSKYIVMIEKDNLKEQGILGEMKKAEDDMKEWCQMLPEDRKLQMNDDIDXXXXXXXDEGHYYINSETGALLSYESAVSLVNYYCSKLPKDSFCPVLQPDYK----FIKEHSGFTCRLTLPS--NSPVREA----VSEVCSSRSKSKKAAAFKACLQLLEKNALNNHLLP 646
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7046.15847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE2.430e-10577.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI1.310e-9875.89Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2S1PRV6_FUCSE1.850e-6361.26Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
A0A4D9CT29_9STRA3.070e-2133.33Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A3F2RT86_9STRA9.540e-2029.39Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A662WV63_9STRA8.880e-1927.95Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
G4Z716_PHYSP1.200e-1826.64Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
W2PDL1_PHYPN1.640e-1829.13Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
A0A0W8CPN9_PHYNI1.900e-1829.13Nuclear export mediator factor NEMF n=1 Tax=Phytop... [more]
A0A2Z6QQ33_9GLOM3.420e-1829.15Dicer-like protein 1 n=1 Tax=Rhizophagus clarus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7046contigL-elsbetiae_contig7046:2716..10068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue3.4e-86
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons6
Model size672
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7046.15847.1prot_L-elsbetiae_contig7046.15847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7046 2716..10068 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.1436083-CDS-L-elsbetiae_contig7046:2715..27751622816782.1436083-CDS-L-elsbetiae_contig7046:2715..2775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 2716..2775 +
1691683809.0417194-CDS-L-elsbetiae_contig7046:2715..27751691683809.0417194-CDS-L-elsbetiae_contig7046:2715..2775Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 2716..2775 +
1622816782.1549468-CDS-L-elsbetiae_contig7046:3765..39181622816782.1549468-CDS-L-elsbetiae_contig7046:3765..3918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 3766..3918 +
1691683809.05542-CDS-L-elsbetiae_contig7046:3765..39181691683809.05542-CDS-L-elsbetiae_contig7046:3765..3918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 3766..3918 +
1622816782.166139-CDS-L-elsbetiae_contig7046:5769..58641622816782.166139-CDS-L-elsbetiae_contig7046:5769..5864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 5770..5864 +
1691683809.0696523-CDS-L-elsbetiae_contig7046:5769..58641691683809.0696523-CDS-L-elsbetiae_contig7046:5769..5864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 5770..5864 +
1622816782.1804368-CDS-L-elsbetiae_contig7046:7255..74191622816782.1804368-CDS-L-elsbetiae_contig7046:7255..7419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 7256..7419 +
1691683809.0789702-CDS-L-elsbetiae_contig7046:7255..74191691683809.0789702-CDS-L-elsbetiae_contig7046:7255..7419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 7256..7419 +
1622816782.1912913-CDS-L-elsbetiae_contig7046:8975..90511622816782.1912913-CDS-L-elsbetiae_contig7046:8975..9051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 8976..9051 +
1691683809.0885782-CDS-L-elsbetiae_contig7046:8975..90511691683809.0885782-CDS-L-elsbetiae_contig7046:8975..9051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 8976..9051 +
1622816782.201743-CDS-L-elsbetiae_contig7046:9944..100681622816782.201743-CDS-L-elsbetiae_contig7046:9944..10068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 9945..10068 +
1691683809.0992086-CDS-L-elsbetiae_contig7046:9944..100681691683809.0992086-CDS-L-elsbetiae_contig7046:9944..10068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7046 9945..10068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7046.15847.1

>prot_L-elsbetiae_contig7046.15847.1 ID=prot_L-elsbetiae_contig7046.15847.1|Name=mRNA_L-elsbetiae_contig7046.15847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
DNERCKTAQTINMFRVGEVQILVTTDACSEGIDVPECNLVVSMDKIKTSR
SLIHTRGRARSKGGKFVIMVEKGDDMERDRVALMLMESEDIKRFHLGHER
ASNLVPFRHSHPRMVHTIESSGAVVDMDMSTALMNQTLGSMGCDFYPLLI
AEEKTSESFVYREKSYMCRLELPSFLGMPTLDTSQVLVNENFWTKSQARS
AVSFLAVLQMLEKGLINTNLNPVR
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mRNA from alignment at L-elsbetiae_contig7046:2716..10068+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7046.15847.1 ID=mRNA_L-elsbetiae_contig7046.15847.1|Name=mRNA_L-elsbetiae_contig7046.15847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7353bp|location=Sequence derived from alignment at L-elsbetiae_contig7046:2716..10068+ (Laminarionema elsbetiae ELsaHSoW15)
GACAACGAGCGGTGCAAGACGGCGCAGACGATCAACATGTTCCGTGTCGG
GGAGGTGCAGGTGCGCCTGCTGATGTGGTTTGTTTGTTGTTTGTTGTTTG
TTGTTTGTTGTTCGCTGCTTGTTGTCGTTGTTGTTGCTGGTGTTGGTTTT
GGTGGTGGTGGTGGTGTGGTGTTGTTGGTGTTGTTGCTTTGTTGTTGTGG
TTTATTGTTGGTGATATAGGATAAACGTTGTTGTTGTTGTTTTGATTGTT
GTTGCTTCTCACATTAGCTATCTAGTCCAAAACATCCATGGGGGCCCGTG
GTCACAAAAACGTGCTCACGTCTGAGTGCGTTTCACGTGTAGTGTCGTGA
GCTCCCACACACGTGCCGGTTGGCGGCGAGTACCGTAGGTGACGTAAGAT
AAGACACCCCCTGGACCGATTTCCAAAGCTCAGGTACTCCACAGCAAGCA
AAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTT
TCCGAAAATGTGGCGTTTGTGGTTAGAATCGTATTCGTTGCGGAGTAACC
AAGCTTTCAATTTGGGTCCAGGGGGTGTCTTATATTATGTCATAGTAATA
TACGGTAGTGCTGGCGGCCATATTTCGCGCCATAAAAACTCAGGTGACAA
GACACCTATATCCCGAGCCATCGATCGCGCTTCATTTTGAAAGATAAACG
GAACCTAACTCACAGCAGTGGGATGCGACTCCGTGGGGTGCAACCGGTAT
TTCATAAGTAGTGACGTCATATCGCTCCGGCCGAGTGCATAGAGAAACAC
CCGAAATGTCGGAAGAGATCCAACATCTCCCGTGCTCTCTGCCGGGTCAA
ACCCGACACGTATTCCATAAAGTGACGTCATATCGCTCCGGCCGAGTGCA
TAGAAAAACGCCCGAAATATCCGAAGAGATCCGGCATCTCCCGTGCAAAG
ATGTCTGCCGGGGCAAACCCAACACGTATTCCATGTAGTGACGTCATATC
GCTCCGGCCGAGTCGTGATGTCGTAATGTCGTGGTGGTGTCGAACGGCAG
ATTCTTGTGACGACGGACGCGTGCTCGGAGGGCATCGACGTGCCCGAGTG
CAACCTGGTTGTGTCCATGGACAAGATCAAGACCAGCAGGAGCCTGATAC
ACACGAGGGGCAGGGCCAGGAGCAAGGGGGGAAAGTTCGTCATCATGGTA
GAGGTAAGTATTTTTGTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGTTGT
TGCTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGCTGCTGTTGTTGTCGCGGTTGTTGTCTTCACATTAGAAAGGGGG
GAAAGTTCGACATCATTGCAGAGGTAGGTGTTGTTGATGTTGTGGTTGTT
GTGGTTGTTATAGTCATCAACCATGTATGTATGTATGTTGTCTTCACATT
AAAAGCCGTTCCTATCTCTCCATCCAGTACCTCTAAATGTCCGTACTATT
CCAACACTTGATGCGGTCAATTCCCGTGGTCACAGGCTACATAACTTATA
CCCAAGAAAAGGTACACGAAAAATAAAATGGACCCGAAGGGCCAGCAAAG
CAACAATTAAAACAGATATCGAATCTGGAAAAAGCGAACAAACTTTTCCA
TGTTTTTTTGTGTGATTTCGACGAGATGTAGCGAAACGTCATGTGAGAGC
GACCAATTGTACCATACAAACCTCTGTATTTCTGGCCTCTGCATCGAACA
TTTGCACCGCCGTGTACTCTCGTTTTAAAGTACATGACAGTAAAGCATAG
AGACGGAACGCCCCTCACGTTCGACACCGGGTCTCTTGTGGAAATGCGGT
GATTCCTCTGCATCGATCAGCGATGAATACATTTTTAAATGTTTCAATGG
CCCAGCCGAGATAAAACAGAACCCGTCGTAAGATAAAAAGTATCAACTAA
CACGCATGTTTATAGGAAAAAAATCTTGAAAATAAAAATCTTGATGTATT
TTGACCTTTGTGGCCACGTTTCTTCGCCACGAGCTCGGAATCAGATTTTC
GCTTCTCAGGGACTTTCAAAGCTCTCCTCCAGAGGTTTACGGACCAGCTG
TCAAATCTGGCACACTCCGGGTTTGGTTGTGTTGACCTCGGAGCGAGATT
TTGCTAGATTTGGCCAAGATTTACAAATTTGCACATTTTGGCTGAATATT
TGCGCGAAGACGACTTTTTGGCCAGATCTTGGCCAGATCCAGCAAAATCT
TGCTCCGAGGCCAACACAACCAAACCCGGAGTGTGCCAGATTGGACAGCT
GGTCCGTAGACCTCTGGAGGAGAGCTTTGAAAGTCCCTGAGAAGCGAAAA
TCTGATTCCGAGCTCTTGGCGAGGAAAAGTGGCCACAGAGGTCAAAATAC
ACTAAGATTTTTATTTTCAAGATTTTTTTCCTATAAACATCGGCCTAAGG
AGGTTCTGTTTTTCAATAGCATCCGTAAACTATAAACTAGAGGGAGTTTC
CTCAATCCCGAGAGGACCAAACGAAGAGTATCCCATCTCCAGCATGATGA
CGAGCTTTTTCCCCCTGCTCCCTATAAAAATAACACACCCCTGAAAATAA
TAACGATACATAGGCCCGGCCGGCGAGAACCCGGCGCGGAACACCCCGGC
ATTGTTGGGGTACCAAGATAGAACCAGGGGGTCTAGATATATTTATCTCC
CGCGGTTGGTGATGTTGGCTTTTCCGGTTTTTGATGTTCACCTCACATAC
GTGGAGAGGGGACCCCGGAGGGCTCCAGACTATCTGCATCTAAGAAAAAG
GTACACGAAAAATAAAATGGACCCGAAGGGCCAGCAAAGCAATAATAAAA
ATAACCATACATACTTAAAAAAAAAAACACGGTGCGCGTGCGCCCCTTCG
TATTAAAGAGGGGGGACGACTAAATGGGCGCAGCAGCAGTAGTATCTAGC
AGCTGAAGTTGTGTCAACCCGCGCCGGTGTTTTGGTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTTTTCTATCCTGACGTGCGCGCGCGT
GCAGAAAGGGGATGACATGGAGAGAGACCGCGTGGCCCTGATGCTGATGG
AGTCCGAGGACATCAAGAGGTTCCACCTCGGGCACGAGAGGGCCAGCAAG
TACGTGAAGCACTCTGAGCATTTTCTGATTTCTGAGCATTTTGTGCACAT
GTATGTACATCTTGTTCTGGTTTCCTGATTTCCGAGTTGTGTACACATAC
ACCTTGTTCTGGCCAGGGACTGGTTCTCAACCATAACTGGTTCCACAAGA
AATTTCCACCTATACATATGCGTTTTTACGGCACGAGAAGGCCAGCGCGT
AGGCATGATCTGAGATTACCAGTTTTTTTTTATTGTCGCGTTGGTGTTTC
CTCGCTTTGGTAGGGGTATGTATGTATGTTTTTTGTTCTGTTTTCCTTTT
TTTCCGCCCATCATTGGCATATTTGTCGTCTGCCCCACTGGTCCCCTTCC
TCCACTATACGACTAGCTCGACGACCCAACCGGGGTCACACAGGAGGGGG
GGGGGGTTGGACCCCTCCTACGGTGCCTGCCTTAGATGTTTTTATCGCGA
GCGTATGTACCTGGTGCTGACTGCACGTTTTTTTTTCTCATGTGAACACG
CATGAAAAGATACTGCCGTACTTGCATCGATTCACGATCGATCCTGCAGA
GGGTTGCTGTTTTGTGATCGATCTCCGCTTCCTTTTTTTCGAAGTAGGTA
TATGTTTTTTGTGATCTCCGCTTTCCTGTTTCTTTGCGTTTTTTGTGATC
TCCGCTTTCCTTTTTTTTCTTACGTTTTTTGTGATCTCCGCTTTCCTTTT
TCTTACGTTTTTTGTGTGATCTCCGCTTCCTTTTTCGTATGTCTTTTGGG
ATCTCCGCTTCTTTTTCGCATGTATTTTTGTGTTCGTGCTTCACCCGCCC
CCACCCCCTCTCCCGGAATGATGCCTCTTGAACCCACCTATGCCGAGAAC
ATGTTTTTCTGCTCTGTTTTCAAATGTTTTGTTCCAACCTCCTCTTTGTG
TTTTGGTGGGCGGTGTCTCCTCTCCTCAGAAACGCCTACTGTGTGTACGT
ACCGCTGTCTTTGAATTGTTTTTTTTTAAACAATTTTTTAATCTCGCTCT
CGTGGCTTTTCCTTGTATTTGTTTATGCATTCGAGTATTGTACCACTTTG
GTTCATGTGGGTCTCGCTATTTGTTTATTTATTTATTTATTTATTTATTT
TTCTTCTTCACATTTATTTCTAGTGCTCGATGGGCTCCTTGTCACGAAGA
CGTCTCGCCATAGTACTGAACCGTGGTCACACAGAAGGGTGGGTTCCTTT
CCCCAAGGCCCCCACTCCCCCCGTCTGCAGTGTCATGTATACAAATGTCA
GTACTCTACGTCCAGTCTGCGAAGGAGCCGTTCCAGAGGGGCTAGTGTTG
TAGGTATACTAACCCCCTGTTTCCCATCCCGGATATATTCGCACGCACTC
AGTAGTTCAATTTTATATCTTGTTCCTCCTCCCCCCTCAGCCTTGTGCCC
TTTAGACACTCCCATCCGAGGATGGTGCACACGATCGAGAGCTCCGGGGC
CGTCGTTGACATGGACATGTCCACGGCCCTCATGAACCAGACGCTCGGGT
CCATGGGCTGCGACTTCTACCCCCTGCTTATCGCTGAGGAGAAGACGAGC
GAATGTGAGAGCTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCGGT
GGTGGTATTGGTGTTGGTGGTGTTGATGTTGTTGGTGTTGGTGTTGGTGT
TGTTGTTGTTGTTGTTGCTGCTGTTGCTGTTGTGGTGTTGTTGTTGTGAT
TGTTGCTGCTGCTGTTGTTGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTT
TGGGTGTTGTTGTTGCTTTGATTGATGTTGCTGCTGTTGTTTGTGTTGTT
GTGGTTGATGTTGCTGGTAGTGAGTAGTGGGTAGTGAGTGGGTAGTGATT
TTTTGGGTAGTGATTTTTTTTGTTTTTTCTTCTTCACATTTATTTCCAGT
GCTCGATGGGCTCCTTGTCACGAGTGCATCTTGCCAGAGTGCTGAACCGT
GGTCTCACAGAGGGCACCTTTTCCCCGAGGCCCCCACTCCCCCCTTCTGC
GGTGCTTGCCTAAGATTTTTAATGGATGTATACTGTTGTAGACAGTCCCG
TTGACAGTCCCGTTGACAGTCCCCACTCCCCCCCTTCTGCGGTGCTTGCC
CAAGATTTTTGTCGCGAGAAGGGTTCAGCAGCCCCTTCTCCCTCGAAGAC
GATGGAGTCGAAGTTTGTGTACGTACACGCGCCAAGCGCTCTGCACTGAC
AGGGACGGAAGAAAGCGCGGGAAAAAAACTCACTTTTTTGCTCAGAGTCA
CATAATTTTTTCCATGATACAATTCTGTCGTTTAAAACTTCTAGATATGT
TATTTTTAGATAAATCTTCATAAGTTATAAAGCTAAAAAGAACTAATGAC
CCTATTATATAAGTAGTTGCAAAAATTATGTTATGTATCAGTAACAGTTT
TAGGTTGGAAAATTGTTTTTAGATAAATCTTCATAAGTTATAAAGGTAAA
AATAACTAATGACCCTATATAAGTAGTTGCAAAAATTATGTTATGTATCA
GTAACAGTTTTAGGTTGGAAAATTGTTTTTAGATAATCTTGATAAGTTAT
AAAGCTAAAACTAACTAATGACCCTATACAAGTAGTTGCTAACTAATGAC
CCTATACAAGTAGTTGCAAAAATTTGTTTGTGCGAGAAAATGTCGCTTCG
CTTCCACCGATTTGCTGTGGTCGATGCTATTGTTGTTGGAACGATGTCAT
TCATGGAGCATGGCGCTGTCGATCCGGCGGTAGCCGTCCCCCCTTCGCCT
TGTGGTGACGCAAGATATCACCCCCCCTGGACCGAATTTTAGAGCTCCAT
TTCTCCGTCACGAAGAGGGGTGCCAGCATCAAACAAAGCATATTCGGACA
GCCCTCGACTAGATCTTTCCAGCGCTACCCTCCTTTGGACACTGGCACTC
TTCTCACTGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTTGTGG
TATCTTCTGTGTCACCTACGGTACATACACAATGGATCGACGCCTTTCCG
GGACGTGCAGGTCTTCAGTCCTGTGTATCCCGCTGGCTGACCCTTCCAAC
TCTCTACCTTCCGCCGCAACCCCCACCTCCCGTCGACAATGATCTGCGGG
ACCCCCTCAGCGTTCGTGTACCGCGAAAAGTCGTACATGTGCCGGCTGGA
GCTTCCGTCGTTTCTGGGAATGCCCACCCTTGACACGTGAGTCGTTCTTC
AGACGTTTTTTCGTGCGGTCTCGCTGTTTTTGTTGTTGTTGTTGTTGTTG
TTGTTTGCAGTTGACAGACCCGTGACGTCTCGTTGTTGTTGTTGTTGTTG
GTGTCGGTGGTGGTGTTGTTTGCGGCGCGTTGTTGGCAGTCCGTGACAGT
CCTGTGACAGTCCTGTGACAGTCTCGTCGTTGTTGTTGCGTGTTGTGTGT
TGTTTGCGGCGCGTCGGTGCTGGCGTTTGCTGTTTTGTCTTGTCATTGTT
GCTGGGGTTGTTGTTGTCGTTGTCGTCGTTGTTTTTTTTTTGTGTCGGGG
GGTCTCTTTCTACCGTTCAGCTGGCTGATTTGTGTTGTTTTTCGTACTTT
TTTTGGCCGCGTTGCCGTCACATTCAAATCCGTTCCGATCTCTGACGCAG
AAAGACTGCCTTCGCGAGAAAAAATGGGGAATATTGTTTTATATGTGAAA
CAGAGTAGTAGGGGTTCCGTAGCCCTAACCTTAACCCTAACCACCGACCC
CCCAAACATTTCCATACTTTATCCCATATGTTTGGCCGACCAAAAACTTG
CGTAGATTACCGGGCTGGGGTCAGTACCTATGACCCCGGTTGGACCGGTT
GGTTAGTTGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACGACGAATACGC
CAATAATGGGTGGAACAATATAAACTTAATCCCTGCCCGTACGTACTCGT
CCAACGCATGATGCAGTCCGTCGATCCCTGTAACAAATGCTTGTTTTTTC
TATTCTCAGGGGCTCTACATCTATAAACGTGCCGGGTGCCCTTTGGGGGA
CCCCGTGAATTAAAGTATTTGTTTTTTCATACGTACACATGTGCCTGAAA
CGCTTCGTTGGTTTCTGGTTGTTGTTCAGGTCTCAGGTGTTGGTGAACGA
GAACTTCTGGACCAAGAGCCAGGCCAGGTCCGCGGTGTCGTTCCTGGCGG
TGTTGCAGATGCTAGAGAAGGGCTTGATCAACACCAACCTCAACCCCGTG
CGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7046:2716..10068+

>mRNA_L-elsbetiae_contig7046.15847.1 ID=mRNA_L-elsbetiae_contig7046.15847.1|Name=mRNA_L-elsbetiae_contig7046.15847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig7046:2716..10068+ (Laminarionema elsbetiae ELsaHSoW15)
GACAACGAGCGGTGCAAGACGGCGCAGACGATCAACATGTTCCGTGTCGG
GGAGGTGCAGGACAACGAGCGGTGCAAGACGGCGCAGACGATCAACATGT
TCCGTGTCGGGGAGGTGCAGATTCTTGTGACGACGGACGCGTGCTCGGAG
GGCATCGACGTGCCCGAGTGCAACCTGGTTGTGTCCATGGACAAGATCAA
GACCAGCAGGAGCCTGATACACACGAGGGGCAGGGCCAGGAGCAAGGGGG
GAAAGTTCGTCATCATGGTAGAGATTCTTGTGACGACGGACGCGTGCTCG
GAGGGCATCGACGTGCCCGAGTGCAACCTGGTTGTGTCCATGGACAAGAT
CAAGACCAGCAGGAGCCTGATACACACGAGGGGCAGGGCCAGGAGCAAGG
GGGGAAAGTTCGTCATCATGGTAGAGAAAGGGGATGACATGGAGAGAGAC
CGCGTGGCCCTGATGCTGATGGAGTCCGAGGACATCAAGAGGTTCCACCT
CGGGCACGAGAGGGCCAGCAAAAAGGGGATGACATGGAGAGAGACCGCGT
GGCCCTGATGCTGATGGAGTCCGAGGACATCAAGAGGTTCCACCTCGGGC
ACGAGAGGGCCAGCAACCTTGTGCCCTTTAGACACTCCCATCCGAGGATG
GTGCACACGATCGAGAGCTCCGGGGCCGTCGTTGACATGGACATGTCCAC
GGCCCTCATGAACCAGACGCTCGGGTCCATGGGCTGCGACTTCTACCCCC
TGCTTATCGCTGAGGAGAAGACGAGCGAATCCTTGTGCCCTTTAGACACT
CCCATCCGAGGATGGTGCACACGATCGAGAGCTCCGGGGCCGTCGTTGAC
ATGGACATGTCCACGGCCCTCATGAACCAGACGCTCGGGTCCATGGGCTG
CGACTTCTACCCCCTGCTTATCGCTGAGGAGAAGACGAGCGAATCGTTCG
TGTACCGCGAAAAGTCGTACATGTGCCGGCTGGAGCTTCCGTCGTTTCTG
GGAATGCCCACCCTTGACACCGTTCGTGTACCGCGAAAAGTCGTACATGT
GCCGGCTGGAGCTTCCGTCGTTTCTGGGAATGCCCACCCTTGACACGTCT
CAGGTGTTGGTGAACGAGAACTTCTGGACCAAGAGCCAGGCCAGGTCCGC
GGTGTCGTTCCTGGCGGTGTTGCAGATGCTAGAGAAGGGCTTGATCAACA
CCAACCTCAACCCCGTGCGCGTCTCAGGTGTTGGTGAACGAGAACTTCTG
GACCAAGAGCCAGGCCAGGTCCGCGGTGTCGTTCCTGGCGGTGTTGCAGA
TGCTAGAGAAGGGCTTGATCAACACCAACCTCAACCCCGTGCGC
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