mRNA_L-elsbetiae_contig7045.15846.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7045.15846.1
Unique NamemRNA_L-elsbetiae_contig7045.15846.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: D7FY04_ECTSI (Putative regulatory protein cII n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY04_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.480e-22
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GDDHSFKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL 156
            G+ HSFKTMAIWNRKGGVAKTT TH+LGF LALKGKRVL+VDA PQCDLS+L
Sbjct:   27 GESHSFKTMAIWNRKGGVAKTTTTHSLGFTLALKGKRVLLVDADPQCDLSYL 78
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: D7FY09_ECTSI (Putative regulatory protein cII n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY09_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.380e-22
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 GDDHSFKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL 156
            G+ HSFKTMAIWNRKGGVAKTTIT +LGF LALKGKRVL+VDA PQCDLS+L
Sbjct:   27 GESHSFKTMAIWNRKGGVAKTTITRSLGFTLALKGKRVLLVDADPQCDLSYL 78
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: A0A1Z4VN37_9GAMM (ATPases n=1 Tax=Thiohalobacter thiocyanaticus TaxID=585455 RepID=A0A1Z4VN37_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 4.760e-11
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   10 HSFKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLS 150
            HS K +AI+N KGGV KTT+T  + FALA +GKRVL+VD  PQC+L+
Sbjct:    5 HSAKRLAIYNHKGGVGKTTLTVNIAFALASRGKRVLLVDTDPQCNLT 51
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: UPI000AA79FAF (AAA family ATPase n=1 Tax=Hymenobacter coccineus TaxID=1908235 RepID=UPI000AA79FAF)

HSP 1 Score: 62.8 bits (151), Expect = 6.470e-11
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 SFKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLS 150
            S KT+AI+N KGGV+KTT T  LG+ LA +GKRV++VDA PQC+L+
Sbjct:    4 SVKTVAIFNHKGGVSKTTTTFNLGWILAEQGKRVIIVDADPQCNLT 49
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: A0A1C5MAZ7_9FIRM (Sporulation initiation inhibitor protein soj n=1 Tax=uncultured Coprococcus sp. TaxID=458253 RepID=A0A1C5MAZ7_9FIRM)

HSP 1 Score: 58.9 bits (141), Expect = 3.430e-10
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   19 KTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLS 150
            KT+AI N+KGGV KTTI+  LG  LA++GK+VL+VDA PQ DL+
Sbjct:    5 KTIAICNQKGGVGKTTISVNLGIGLAMQGKKVLLVDADPQGDLT 48
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: C0B9Z7_9FIRM (AAA_31 domain-containing protein n=7 Tax=Lachnospiraceae TaxID=186803 RepID=C0B9Z7_9FIRM)

HSP 1 Score: 58.9 bits (141), Expect = 4.580e-10
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   19 KTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLS 150
            KT+AI N+KGGV KTTI+  LG  LA++GK+VL+VDA PQ DL+
Sbjct:   17 KTIAICNQKGGVGKTTISVNLGIGLAMQGKKVLLVDADPQGDLT 60
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: UPI0006B93E44 (ParA family protein n=1 Tax=Pseudomonas syringae group TaxID=136849 RepID=UPI0006B93E44)

HSP 1 Score: 58.5 bits (140), Expect = 6.980e-10
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 FKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL 156
             KT++I+N KGGV KTT+T  L  ALA  GK+VL++D  PQC++S L
Sbjct:    1 MKTISIFNNKGGVGKTTLTFHLAHALATMGKKVLIIDLDPQCNISTL 47
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: UPI001916EA4D (AAA family ATPase n=1 Tax=Actinomyces sp. HMT 175 TaxID=2789425 RepID=UPI001916EA4D)

HSP 1 Score: 61.6 bits (148), Expect = 8.660e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   16 FKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL 156
             KT+ ++N KGGV+KTT T  LG+ LA KGKRVL+VDA PQC+L+ L
Sbjct:    1 MKTIVLFNNKGGVSKTTTTFNLGWNLAEKGKRVLIVDADPQCNLTRL 47
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: A0A2K8T5W3_9NOSO (Cellulose biosynthesis protein BcsQ n=1 Tax=Nostoc flagelliforme CCNUN1 TaxID=2038116 RepID=A0A2K8T5W3_9NOSO)

HSP 1 Score: 61.6 bits (148), Expect = 8.980e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   16 FKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLS 150
             K ++I+N KGGV KTT+T+ L  ALAL GKRVLM+D+ PQC+L+
Sbjct:    1 MKIISIFNNKGGVGKTTLTYHLAHALALMGKRVLMIDSDPQCNLT 45
[Close]
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Match: A0A1Y1Q3L8_9GAMM (AAA_31 domain-containing protein n=1 Tax=Thiotrichaceae bacterium IS1 TaxID=1934244 RepID=A0A1Y1Q3L8_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 9.130e-10
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   16 FKTMAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL 156
            F  + ++N KGGV+KTT ++ LG+ LA  GK+VL+VDA PQC+LS L
Sbjct:    2 FTKIVLFNHKGGVSKTTTSYNLGWMLASLGKKVLLVDADPQCNLSSL 48
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7045.15846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY04_ECTSI1.480e-2284.62Putative regulatory protein cII n=2 Tax=Ectocarpus... [more]
D7FY09_ECTSI4.380e-2284.62Putative regulatory protein cII n=1 Tax=Ectocarpus... [more]
A0A1Z4VN37_9GAMM4.760e-1161.70ATPases n=1 Tax=Thiohalobacter thiocyanaticus TaxI... [more]
UPI000AA79FAF6.470e-1163.04AAA family ATPase n=1 Tax=Hymenobacter coccineus T... [more]
A0A1C5MAZ7_9FIRM3.430e-1063.64Sporulation initiation inhibitor protein soj n=1 T... [more]
C0B9Z7_9FIRM4.580e-1063.64AAA_31 domain-containing protein n=7 Tax=Lachnospi... [more]
UPI0006B93E446.980e-1055.32ParA family protein n=1 Tax=Pseudomonas syringae g... [more]
UPI001916EA4D8.660e-1061.70AAA family ATPase n=1 Tax=Actinomyces sp. HMT 175 ... [more]
A0A2K8T5W3_9NOSO8.980e-1060.00Cellulose biosynthesis protein BcsQ n=1 Tax=Nostoc... [more]
A0A1Y1Q3L8_9GAMM9.130e-1055.32AAA_31 domain-containing protein n=1 Tax=Thiotrich... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7045contigL-elsbetiae_contig7045:10150..10305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4e-15
Seed eggNOG ortholog2880.D7FY08
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.AAA domain
EggNOG OGs2CZ0S@1,2S7P2@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.1006386-CDS-L-elsbetiae_contig7045:10149..102811622816782.1006386-CDS-L-elsbetiae_contig7045:10149..10281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7045 10150..10281 -
1691683809.0218363-CDS-L-elsbetiae_contig7045:10149..102811691683809.0218363-CDS-L-elsbetiae_contig7045:10149..10281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7045 10150..10281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.1116734-UTR-L-elsbetiae_contig7045:10281..103051622816782.1116734-UTR-L-elsbetiae_contig7045:10281..10305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7045 10282..10305 -
1691683809.032284-UTR-L-elsbetiae_contig7045:10281..103051691683809.032284-UTR-L-elsbetiae_contig7045:10281..10305Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7045 10282..10305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7045.15846.1prot_L-elsbetiae_contig7045.15846.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7045 10150..10281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7045.15846.1

>prot_L-elsbetiae_contig7045.15846.1 ID=prot_L-elsbetiae_contig7045.15846.1|Name=mRNA_L-elsbetiae_contig7045.15846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MAIWNRKGGVAKTTITHALGFALALKGKRVLMVDASPQCDLSFL
back to top

mRNA from alignment at L-elsbetiae_contig7045:10150..10305-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7045.15846.1 ID=mRNA_L-elsbetiae_contig7045.15846.1|Name=mRNA_L-elsbetiae_contig7045.15846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig7045:10150..10305- (Laminarionema elsbetiae ELsaHSoW15)
GGCGACGACCACAGCTTCAAGACCATGGCAATATGGAACCGCAAGGGAGG
CGTCGCGAAGACCACCATCACCCACGCACTCGGATTCGCTCTTGCCTTGA
AGGGGAAACGGGTTCTAATGGTGGACGCAAGTCCGCAGTGTGACTTGTCC
TTCTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7045:10150..10305-

>mRNA_L-elsbetiae_contig7045.15846.1 ID=mRNA_L-elsbetiae_contig7045.15846.1|Name=mRNA_L-elsbetiae_contig7045.15846.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig7045:10150..10305- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAATATGGAACCGCAAGGGAGGCGTCGCGAAGACCACCATCACCCA
CGCACTCGGATTCGCTCTTGCCTTGAAGGGGAAACGGGTTCTAATGGTGG
ACGCAAGTCCGCAGTGTGACTTGTCCTTCTTGATGGCAATATGGAACCGC
AAGGGAGGCGTCGCGAAGACCACCATCACCCACGCACTCGGATTCGCTCT
TGCCTTGAAGGGGAAACGGGTTCTAATGGTGGACGCAAGTCCGCAGTGTG
ACTTGTCCTTCTTG
back to top