mRNA_L-elsbetiae_contig7038.15837.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7038.15837.1
Unique NamemRNA_L-elsbetiae_contig7038.15837.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: D8LLC7_ECTSI (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLC7_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 5.840e-96
Identity = 146/171 (85.38%), Postives = 156/171 (91.23%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATG----AGAALGFGKSLDEAKKGDKEGSVT-DKPKKIGF 498
            RWN EIV+RLTDGVKESLK CNVT+SNIFETKVPGAFELPLAARFL+LSQTVDAVVCVGCLIKGDTMHFEYIAESTC+GLMDVSI T+TPVVLGVLTCTEEEQA+KRSTGDNNHG DWGKTAVEMGLLRMSATG    AG ALGFGKSLD+ K G K+G++   KPKKIGF
Sbjct:   82 RWNEEIVNRLTDGVKESLKECNVTESNIFETKVPGAFELPLAARFLSLSQTVDAVVCVGCLIKGDTMHFEYIAESTCKGLMDVSIQTSTPVVLGVLTCTEEEQAIKRSTGDNNHGVDWGKTAVEMGLLRMSATGVGKKAGGALGFGKSLDDKKDG-KDGAIPGSKPKKIGF 251
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S2RMT1_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMT1_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.460e-65
Identity = 105/160 (65.62%), Postives = 122/160 (76.25%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAAL----GFG---KSLDEAKKGDK 459
            RWNPEI+  L  GVK++L+ C V D+NIFET+VPGAFELPLAARFLALS TVDAVVCVGCLIKGDTMHFEYI ++   GLM+V + T+TPVV GVLT  +EEQA  RSTG+NNHG  WGKTAVEM LLR SA G G ++    GFG   K  D+   GD+
Sbjct:   61 RWNPEIIGDLKSGVKQALEECKVKDANIFETEVPGAFELPLAARFLALSGTVDAVVCVGCLIKGDTMHFEYICDTVSSGLMNVGLQTSTPVVFGVLTVMDEEQAKARSTGENNHGLSWGKTAVEMALLRQSALGQGKSMSMSMGFGNATKVKDDVLPGDR 220
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A6U1PVR1_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PVR1_9STRA)

HSP 1 Score: 207 bits (527), Expect = 5.750e-65
Identity = 100/169 (59.17%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATG---AGAALGFGKSLDEAKKGDKEGSVTDKPKKIGF 498
            RWN +I+D L++GV++SL  C V + NIFET+VPG+FELPLAARFLA+S  VDA++C+GCLIKGDTMHFEYIA++  +G+M+V I T+ PVV GVLTC +E QAVKRSTG+NNHG  WG TAVEM LLR SA G    GA + F   +D   K +K+ S  +  KK+ F
Sbjct:   61 RWNEQIMDGLSEGVQKSLNDCGVEEKNIFETEVPGSFELPLAARFLAMSNRVDAIICLGCLIKGDTMHFEYIADAVAKGIMNVGISTSVPVVFGVLTCLDEAQAVKRSTGENNHGLSWGLTAVEMALLRRSAMGMETGGAKIAFASGVDTEIKKEKKESEEEDSKKVYF 229
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A835YTX6_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX6_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.170e-61
Identity = 103/168 (61.31%), Postives = 119/168 (70.83%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAALGFGKSLDEAKK--GDKEGSVTDKPKKIGF 498
            RWN EIV  L  GVKE+L+ C V   +IFET+VPGA+ELPLAARFLALSQTVD++VC+GCLIKG+TMHFEYIA++   GLM V + T  P V GVLT  +E QA  RS G+NNHG  WG TAVEMGLLRMSA G G A G      E     GDK+    D+ KKIGF
Sbjct:   62 RWNGEIVGNLRSGVKEALEKCGVKPEHIFETEVPGAYELPLAARFLALSQTVDSIVCLGCLIKGETMHFEYIADAVSSGLMQVGLSTTCPTVFGVLTTLDEAQAKSRSEGENNHGVGWGMTAVEMGLLRMSALGQGKASGMXXXXAEGLSIVGDKK--ADDERKKIGF 227
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A1Z5JVA4_FISSO (6,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVA4_FISSO)

HSP 1 Score: 192 bits (487), Expect = 3.950e-59
Identity = 92/163 (56.44%), Postives = 119/163 (73.01%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAG---------AALGFGKSLDEAKKGDKE 462
            RWN E V+ L  G+K+ LK C V+D+NIFET VPG+FELP+AARFLAL+ T DA++  G LIKGDTMHFE+IA++  +G+M++ + T+TPVV GVLTC  E+Q   RSTGDNNHG DWGKTAVEM LLR  A G           AA+GFGK+ +++   +K+
Sbjct:   46 RWNEEHVNNLVAGIKKGLKECKVSDTNIFETSVPGSFELPMAARFLALTGTCDAIITTGVLIKGDTMHFEFIADAVAKGIMNIGLQTSTPVVFGVLTCQNEQQVKDRSTGDNNHGYDWGKTAVEMALLRTEALGGKKGEESKEMLAAMGFGKADEDSASKEKK 208
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S2BJM5_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJM5_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.060e-57
Identity = 95/151 (62.91%), Postives = 111/151 (73.51%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAALGFGKSLDEAKKG 453
            RWNPEI+  L  G K++LK   V + NIFET+VPGAFELPLAARFLALS TVDA+VCVGCLIKGDT HFEYI+++T  GLM V I T+TPVV GVL    E+QA+ R+TG +NHG  W +TAVEM LLR +A G     G G S D AK G
Sbjct:   65 RWNPEIISSLQTGCKDTLKDLGVKEENIFETEVPGAFELPLAARFLALSGTVDAIVCVGCLIKGDTQHFEYISQATSSGLMSVGIQTSTPVVYGVLNVNTEQQALDRATGPDNHGISWAQTAVEMALLRSAALGMSKKTGMGFS-DAAKLG 214
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S2CUY9_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUY9_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.670e-57
Identity = 91/157 (57.96%), Postives = 116/157 (73.89%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAG-AALGFGKSLDEAKKGDKEGS 468
            RWNPEI++ L    K++L    V D NIFET+VPGAFELPLAARFLALS TVDA+VC+GCLIKGDT HFEYI++S   G+M+V + T+TP++ GVLT   E+QA+ R+TGD+NHG  W +TAVEM LLR  A G   A++GFG +  + +   K GS
Sbjct:   63 RWNPEIINSLQVACKKTLDDVGVKDENIFETQVPGAFELPLAARFLALSGTVDAIVCIGCLIKGDTQHFEYISDSVSSGIMNVGLQTSTPIIFGVLTVNTEQQALDRATGDDNHGISWAQTAVEMALLRKDALGKKPASMGFGSTSRDGESKGKVGS 219
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S0JHP7_9EUKA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JHP7_9EUKA)

HSP 1 Score: 187 bits (476), Expect = 3.410e-57
Identity = 96/170 (56.47%), Postives = 122/170 (71.76%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAA---LGFGKSLDEAKKGDKEGSVTDKP-KKIGF 498
            RW+PEI + L  G K +L  C V + NI ET+VPG+FELPLAAR+LALS TVDA++ VG LIKGDT+HFE I+E+   GLM V + T  P++ GVLTC +E+QA+ RS GDNNHG DWGK AVEM LLR SA G G +   +GFG +++E      +GS T KP +K+GF
Sbjct:   69 RWHPEICESLVSGAKAALAECGVPEENIIETEVPGSFELPLAARYLALSGTVDAILPVGVLIKGDTIHFEVISEAVTDGLMSVGLQTGLPIIFGVLTCMDEQQALSRSKGDNNHGVDWGKAAVEMALLRTSAVGKGKSKLFMGFG-NVEEV-----DGSGTKKPVEKVGF 232
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S0KAM5_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAM5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.590e-57
Identity = 93/170 (54.71%), Postives = 116/170 (68.24%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATG----AGAALGFGKSLDEAKKGDKEGSVTDKPKKIGF 498
            +WN   VD + +G K++LK CNVT++NIFET+VPGA+ELP AA+ LALS TVD ++C G LIKG TMHFEYI ++   G+M+V + T  PV+ GVLTC  EEQ V+RSTG+NNHG  WGKTAVEM LLR  A G    +   +GF  SL  A  G KE        K+GF
Sbjct:   57 KWNKVHVDNVVNGAKDALKECNVTEANIFETEVPGAYELPFAAKMLALSGTVDVIICAGVLIKGGTMHFEYICDAVSSGIMNVGLQTNVPVIFGVLTCLTEEQVVERSTGNNNHGDGWGKTAVEMALLRKEALGIKTQSKGPIGFDASLTTAGDGSKE--------KVGF 218
[Close]
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Match: A0A7S1BJ35_9STRA (6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ35_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.410e-56
Identity = 89/164 (54.27%), Postives = 110/164 (67.07%), Query Frame = 1 
Query:    1 RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQTVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTEEEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAALGFGKSLDEAKKGDKEGSVTDKPKKI 492
            RWN E VD L DG KE+LK C V D N+F  ++PG++ELPLAARFLALS TVDAV+C+G LIKGDTMHFEYI  +   G+M+V + T+TP + GVLT   ++Q V RSTGDNNHG  WGKTA+EM LLR  A G       G  L+     D   +    P+K+
Sbjct:   67 RWNKEAVDSLLDGAKEALKECGVKDENVFVKEIPGSYELPLAARFLALSGTVDAVICMGVLIKGDTMHFEYICSAVSSGIMNVQLQTSTPCIFGVLTALNDQQVVDRSTGDNNHGYGWGKTAIEMALLRNEALGKTGKKNRGFGLEAGNDYDDSDADAKDPEKL 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7038.15837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC7_ECTSI5.840e-9685.386,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ec... [more]
A0A7S2RMT1_9STRA3.460e-6565.636,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Rh... [more]
A0A6U1PVR1_9STRA5.750e-6559.176,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fi... [more]
A0A835YTX6_9STRA1.170e-6161.316,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Tr... [more]
A0A1Z5JVA4_FISSO3.950e-5956.446,7-dimethyl-8-ribityllumazine synthase n=2 Tax=Fi... [more]
A0A7S2BJM5_9STRA2.060e-5762.916,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Fl... [more]
A0A7S2CUY9_9STRA2.670e-5757.966,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Di... [more]
A0A7S0JHP7_9EUKA3.410e-5756.476,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Ca... [more]
A0A7S0KAM5_9STRA4.590e-5754.716,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Le... [more]
A0A7S1BJ35_9STRA2.410e-5654.276,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Co... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7038contigL-elsbetiae_contig7038:188..6240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.2
Seed ortholog evalue9.9e-75
Seed eggNOG ortholog2880.D8LLC7
Preferred nameRIB4
KEGG rclassRC00010,RC00163,RC00958,RC00960,RC02752
KEGG koko:K00793,ko:K00794,ko:K00820
KEGG ReactionR00066,R00768,R04457
KEGG Pathwayko00250,ko00520,ko00740,ko01100,ko01110,ko01130,ko04931,map00250,map00520,map00740,map01100,map01110,map01130,map04931
KEGG ModuleM00125
Hectar predicted targeting categoryother localisation
GOsGO:0000906,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006766,GO:0006767,GO:0006771,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009231,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016020,GO:0016740,GO:0016765,GO:0017144,GO:0018130,GO:0019842,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0036094,GO:0042364,GO:0042726,GO:0042727,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902444
EggNOG free text desc.6,7-dimethyl-8-ribityllumazine synthase activity
EggNOG OGsCOG0054@1,KOG3243@2759
EC2.5.1.78,2.5.1.9,2.6.1.16
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Ec32 ortholog description6,7-dimethyl-8-ribityllumazine synthase
Ec32 orthologEc-27_002140.1
Exons7
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.4450965-CDS-L-elsbetiae_contig7038:187..2441622816781.4450965-CDS-L-elsbetiae_contig7038:187..244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 188..244 +
1691683808.5462961-CDS-L-elsbetiae_contig7038:187..2441691683808.5462961-CDS-L-elsbetiae_contig7038:187..244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 188..244 +
1622816781.460673-CDS-L-elsbetiae_contig7038:1203..12771622816781.460673-CDS-L-elsbetiae_contig7038:1203..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 1204..1277 +
1691683808.5632877-CDS-L-elsbetiae_contig7038:1203..12771691683808.5632877-CDS-L-elsbetiae_contig7038:1203..1277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 1204..1277 +
1622816781.4718218-CDS-L-elsbetiae_contig7038:2157..22151622816781.4718218-CDS-L-elsbetiae_contig7038:2157..2215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 2158..2215 +
1691683808.5734575-CDS-L-elsbetiae_contig7038:2157..22151691683808.5734575-CDS-L-elsbetiae_contig7038:2157..2215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 2158..2215 +
1622816781.4873753-CDS-L-elsbetiae_contig7038:3491..35281622816781.4873753-CDS-L-elsbetiae_contig7038:3491..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 3492..3528 +
1691683808.5834465-CDS-L-elsbetiae_contig7038:3491..35281691683808.5834465-CDS-L-elsbetiae_contig7038:3491..3528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 3492..3528 +
1622816781.500167-CDS-L-elsbetiae_contig7038:3888..40171622816781.500167-CDS-L-elsbetiae_contig7038:3888..4017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 3889..4017 +
1691683808.60063-CDS-L-elsbetiae_contig7038:3888..40171691683808.60063-CDS-L-elsbetiae_contig7038:3888..4017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 3889..4017 +
1622816781.5107214-CDS-L-elsbetiae_contig7038:4785..48321622816781.5107214-CDS-L-elsbetiae_contig7038:4785..4832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 4786..4832 +
1691683808.6108816-CDS-L-elsbetiae_contig7038:4785..48321691683808.6108816-CDS-L-elsbetiae_contig7038:4785..4832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 4786..4832 +
1622816781.5229754-CDS-L-elsbetiae_contig7038:6141..62401622816781.5229754-CDS-L-elsbetiae_contig7038:6141..6240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 6142..6240 +
1691683808.621014-CDS-L-elsbetiae_contig7038:6141..62401691683808.621014-CDS-L-elsbetiae_contig7038:6141..6240Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7038 6142..6240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7038.15837.1prot_L-elsbetiae_contig7038.15837.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7038 188..6240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7038.15837.1

>prot_L-elsbetiae_contig7038.15837.1 ID=prot_L-elsbetiae_contig7038.15837.1|Name=mRNA_L-elsbetiae_contig7038.15837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
RWNPEIVDRLTDGVKESLKACNVTDSNIFETKVPGAFELPLAARFLALSQ
TVDAVVCVGCLIKGDTMHFEYIAESTCQGLMDVSILTATPVVLGVLTCTE
EEQAVKRSTGDNNHGRDWGKTAVEMGLLRMSATGAGAALGFGKSLDEAKK
GDKEGSVTDKPKKIGF*
back to top

mRNA from alignment at L-elsbetiae_contig7038:188..6240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7038.15837.1 ID=mRNA_L-elsbetiae_contig7038.15837.1|Name=mRNA_L-elsbetiae_contig7038.15837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6053bp|location=Sequence derived from alignment at L-elsbetiae_contig7038:188..6240+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGAACCCGGAGATCGTGGACCGCTTGACCGACGGCGTGAAGGAGTC
TCTCAAGGTGAACACACGGGGAAACGAGCGAAAGTAAAAAGAGAGGGAGA
GGGCGGGTGTCATGTTGCCAATAATGGGAGGATAAGAGAAAGAAGAAAAA
CAAATGTTGTCACGACGTGGTCCATAGGGTCTCCCTAGACATCACTCAAA
ACGCTGACCGTTAACTCGCTCCCCTACAAGCACGCAGCAAAGCGGGCACC
CAGCACCGACGGTCAGGAGGGGGGCGCGTTGTCCGTGTGAGGCCCAGTTC
TTCCGGGCTCACGCAAGGCGTTGGGAGGGTTATAAAGCAACCCCCCCCTT
TCCCCCCCGCGCTTCATTCGTTTCAATTCGGTCGGATAACAAATTAGAGC
AGTCGTTGGTAGGATTAGCTGTAAATTGGCCCCGAGAAGCTCGAAAAGCC
TGCCGCGCCTCTCTGCAAAGGCATCAAAGCTTTGCTCTGCACGGCACCAC
TGCTACTCCTCGAGAGGAGTGACGCCAAGCCCACGAGCACGGCCCTGCCG
CCAAAATAAGAGTTATTTAGCCTGCTGTGTTCAGATCCGCCCCCCCCCGT
GTGTTTTGGGTTGTTTCGTTTCGGCTCGTCGCTGCTGCTGTCTGTCTTGT
GCTGCTTCACACTCTTGTCCGTTGCATTGCCTTGCCCGGCTGGTTTACTC
CTCGGAGACACAGTTCGGTGCCGTTGTCGTCGCGGCACCGCCGTATCTAA
CCTCTTCGCTTCCGTTCCGCACACATTTGGGGGGCAGGCAAAGAGGCAAA
GGCGCTCGCTCTACATAGAGGTCTTGTGTGGTGCTGTTGCTGCTGCCGTT
GCTGGTTTTGTTGGCCACACCTCTCTTGACCCCGTTCCTTTTGTGTGCAC
CGTCGTGTCGTTTGGTTTGGTGTTCTCGCGCGTGCCTGCCGCCCGTCCGT
TCATCCGTTCGTTCGGCCGTTTTCGTTTCGTTCATGCCCTCGGGCTCTCG
CTCTCCCGGTCGCCAGGCGTGCAACGTGACGGACTCTAACATCTTCGAGA
CGAAGGTGCCCGGGGCGTTCGAGCTCCCGCTCGCCGCCCGGTAAGCTCGG
CGAGCGTTCGTCGCGCAGGCTGAACTGTTATATTAACGAACACGACTGGT
GGAAACACCGCTGCTGTCTTGCTGCTGCTGCCGGCCGCCGCCGCCGCCGC
TGCCGTCGTTTTCTTGAAGCCTACGTAACACATTAACTTCATATGTAGGT
ACGTCATGATATGTACAAAAATACCCCGAAAGTGCGGGGCGGAGTCGGGG
ATGATTGTACGGGGCGGCGACTGATGTGACGCCCTCGCGACAGGAAATCA
GAGCAAGCCAAGCTATCCAACCAGGCTCTATGTATGCGACAACCGCTACT
GCTGTAGATATGTAGGTGCATCATCGTACATACAAAAACACAATATCCAA
GGCCGCTTGGCTGTCTCTGGTGCCTTTATGTATGTATGTATGTATGTATG
TATGTACATATGTATGCTATCTTCTGGTAGACGCGCAGGAGGGCGCGATG
TTGTTGGTGGAGGAGGTGACTTTTTTTTACTCGGGAACGGTGCTCCGTGT
CGAACGGGTTGCAGTGGGGTCCGTGTGATCAAAAGGCCAATTTTTCCGGA
ATTATTCAAAGACGGAGGAGAGTTGGGGTGCCCTGCTTCACCCCCTCCAA
TTCCAGTGGCGGAACCTCCCGTCGTGCCACGGTCTCTCTTCTCCGTCTTG
GCTGTCCTATGCACTGCTGTCTTGAAGCTGCCGTTTTGACAGGTGTCGAT
TCGGTTTTCGACAGATTGGTCTGTCTTGCAACAACAAATGTTTTTAGGCT
AAATAACAACCATTGTTTTAGGCTCGCCACGACCGTTATATTCGTCGACT
AACCTGTTTTGACCAAATATACTCTTTGCTGCCTCTCTCTGCCTTTGTCG
GCCGTGGTCTTCTCGGGCAGATTCCTCGCTCTGTCGCAGACGGTGGATGC
CGTCGTGTGCGTGGGCTGCCTCATCAAGGTAAGCCACGTCGTCCCTCTGC
GCACGAGAAGGGGTGTGTAAAAATACACTGTGCACATGATGCACACACCC
TCGGCGCCGCCGCCGGTTGTTGCCGCTAGTTTGTGCGCACTGTGCGCTGG
CCCTCTCTGGAAGCTATATATCGTAGATAGGCCCGCAACGGTGTGCTCTG
GGTTTCGTAGGCTGTCGTCCTTTGTCACCGGAGCATACATACTGCGTCGT
ACTACTGTTGTTCCACGTGCAGAGAGGGTAGTGGTTTGAGCCGGGTGGCA
GGTTGTGGTTCTCCTGTGTATCATTGGGGTTAGATGGTCTTGGCGCCGTT
GTGGTTCTCCTGTGTACCATTGGGGTTTGATGGTCTTGGCGCCGTTGTGG
TTCTCCTGTGTACCATTGGGGTTAGATGGTCTTGGCGCCGTAAATGTGTT
GATCAGACAAAGTACACTCTGTGTTACGAGCCGAGCAATTTCTGCCGTCT
GTGTGCCTTCTGTGGGCCACAGAGAGAAACAATACAAAGGAGGCCAAGGG
CTTGGGTGGCTAGCATTCGTATGATAAATTGTAGGTGCGCGGGTGTGTAT
GAGCGTGTTTTGTGTGTGACTTTGAACACAAATCAGGAAATCAAGCAAAG
AACCTCCCCATATTAGAGACGGCACTCCGTGGTGAATTGCAGCATTGGTC
CGGCCATTAAGAAGAGCATCTAAAATATTAGAAAAGTTTAACCCCCCCCC
CCCCTACAATTCACAATTCTGCCAGGTCAGCCAGCAAGAATTCCGGGGGG
AGACCCGCCGTAATGCTGTGGTCTTGTTGTTTTCTTGTAACTAGGAATCG
ATGATTTTGTTCATTTCCCTGTAACTTTACCGCCTCTGTTCCAGACACGC
ACGCGAGGACGCGCGCTTATAGAATTAATCAACAGCAGCGTCCCGCCGTT
ATCGCGCGCGCGCTATCGGCGAGCACGTTTTTTTCAGTTGCAAGCATGTT
AGCACTACCAGTTCTACGAAGCAACTCTGCAGCACAACGTCATTCTCGGT
ATGCAACCTGCTGTGTCGCCCCAAGATAGATACACAGACTAGAGACACGG
ATGTACTGCAATCACACTCTAATTCGCCTACATTTTTCTTTTTTTCTATT
GCAAAATCAATGAAAAACATATTTTCTCGAACCAAATGTACCCGATCGCG
CCAAACCACTTCTTCGCCATGCCCCCCCCCTCCGTGTGTGTGTCTCTCCT
TTGCGCATTGTTATCCACCCCCACGCTGCTCTGGGTTCCGGCACGTTGCA
CCAGGGCGACACCATGCACTTCGAGTACATCGCGGAGTCAAGTGAGTGTT
GCGGTCATGTTGGATTCACGGCATCGATCGCCAGGTCATCTCGCGGCGAG
AGGGCCTGGTTTGTTCTGTTTTGGTTGATGCCATGCAGAAGAGCTATGTA
CGTAGGCGCTTCGCGAGAGGGGGTGTGTGCTGCTGTTGGGCGTCGTGGAC
GGAAGGGGGCCCGTGAGCTGCTAGACTGCCCACCTCTACACGTAAGGGTT
CGACATCTCAAAGGGTTTGGCCTCTCCAAGGGCTTGACCGTCGACGTTTT
ACCATCGATGGATCGATCCCGACTTCCTCGCCGTTTTACGCTTTCGTGTC
CTCCGCGCTGCCTGCCTGCCTGCCTGCCTGCGATGCTGTGCTGTATCACA
GCGTGCCAGGGGCTGATGGATGTTTCCATCCTGACCGCGACGCCGGTAGT
GCTGGGAGTGCTCACGTGCACAGAAGAGGAGCAAGCGGTCAAGCGCTCCA
CGGGGGACAACAACCACGGGCGCGACTGGGGTAAGCCGCTGCAGCCGCTG
CTGCTACTGCTGCTGTTGCTGTTTTCTGCATGGGGTTTGTCGCTACTGCT
GTTGACCAGGCCGGGGTACTTCTGTTTGTCGTCGGTTGTTGCTGCCGGCC
TGCGGGGTGTTTTGCTTTTGAAAGGGGGTCCCGTGGCGGGTGGGTGTGCG
AGTTGTTGCTTAGGTCGATCTTGGTGTCTGTGTGCTGACTAAATAGGCTC
TCCGGTTGTTCTGCCGTTCCCGTAAATGTTTGTCTCCAGGCTTCAGAGAC
AAATGTAGTACCTATCGGAGGGAGCGTCTGGAGTGAAAATACATAGGTGT
TGTAAAGTGTTATTAGAGACGGAGGAGGAAAGCCGGGACCAGTTGCAACG
TGATTCGCGGGCTGTGCGGACCAGTCTAAAGAATGGTCGACCACGAAAAC
AATGTACATACATGGAACGTACGAGTCTTTGCCGCCCTCCTTCCAGGCTA
TACGGCGTGCAGTGCTTTCGTCACTTGAGCGCCCGTGTCGCTATCAAATG
AAAAACGTTCGCTTCACGCACATCATCCCCTTGTGGCAAGGATTTTTGTT
TCCAGCGTAGAATGATTTGGCTGTCTGAAAAAGTAGCCCTAATTCGTTCG
CCGCGCTTCTATGCCTCCCTGTGCCCGTATTTCTTGTGGGCGCAAACGAA
TTTGAATGTGGTGCGCCCCGCCTCACTCCTCCTCGTTCTTTCTCCTTTTG
CGCGTCTCGGAATCCCCTCGGAATTTCGTCGTGAAACAAAATCGACAGGC
AAGACGGCGGTCGAGATGGGCCTCCTCCGTATGAGCGCCACGGGTGTGGG
CAAGAAGGCGAGAGAAAATGCTATATACAGTATGAAAAAGACAACCCTAA
TTTGCCGTCAAAAGACAATCTAGCTGGGTGTTGGTGTTTGGGAGGGACTT
CGCGCACACCCTTTGGCAGATACTTCGAAGTGTTTGCACACGGACTGGAT
TACGCCGTTTGTTTGATCACCTTTTGAAATCGCCGCTTTGAAATACCGCA
AGTGTCGTCTCCTCTCCGCCCTTCTTTTGACAGTGTCCCTGTCAGAACAC
GCTTTTGTATAGCGTGCGAGCGTCTTAACTGGGTTAGATAGTCCTGCAGT
AGTCTATATCTTTACCACCCAGCAACCCGTCAACACCAAGACTGCCGTGT
GCATGCCACACAAGTAGCCGTGTACAGTACCGGCCCGCTCATAAGAAACT
CACTCATAAGAAACCCAGCCTCAGGTTTATCAAACAAAAACGGGGGCTCC
GTGGCGAGTGCTATCCTACACTAAATCCTATATAAATACATTTAGAAACT
CAGCCTCGGCCGAAATTTCAAGTTTCTTATGATCTGGCCGGTACTGTTTG
AGGTATGTATCAAGTGCCGTTTTTTGTGTTTTTGGTGGCCATATATCCTG
CAACAAGAGGCCGGGGAGAATGGGTGACTGCTCGGAAACCGCGAGGAGAA
GGAGGGAATAACAGTGTTGCTCATCCCTTGTGGCGTAGTCTTGATATACC
TATTTTACTCAGGACGTTGCTGCCTGCGAGTTTGGCGTTAACGAATTGGT
GAACCCCTTGCCTCTCTCCAAGCCGTCCCAGATCCTAGATGACGACGACG
GCGGTGGTTGTGGTTATAACGCTATCTACCCTATATGGGGCGCAACGAAC
CACCGATTCTCGCGAAAATGTTGCAGTACATACGTCCGTCTGTAAACAGC
TTCGTTTTTAGGAAGCGAACCACTCAGCTGAATAACGGAAGCCATCCCAA
CACGCCGAAACCCGGCTGTGAAACCGCCACGGCCAACAATGACGAGCGGA
GACCTATTCACGCTCCCATCTACCCATCCCTCCTCCCTCATTCGCGTTTT
TTTGCTTTTCTTCAAAACGTCAGCAGCATTGCGCCCGACCTGCGGGTCTT
GTTTGAGTCCCGTGTTGCCGGCACCATGTTGTATGCTATCCAACACTCCG
CCCACTCCCTCCCCCCCGCTCTCCTGATTTCGGGTGCCGGTTCGCTGGCT
CGCTGCCTGTGTGTGTGTGTGTTGCTCCCTCCGCACGTGTGTATTCAACG
CAACTCTTGTCTGTCTCGTCCTCTCGTTTCGTTGTTTTGGTACGATAACG
CCAGGCGGGCGCGGCCCTCGGCTTCGGGAAGAGCTTAGACGAGGCCAAAA
AGGGCGACAAGGAGGGCAGCGTCACCGACAAGCCAAAGAAGATCGGCTTC
TAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7038:188..6240+

>mRNA_L-elsbetiae_contig7038.15837.1 ID=mRNA_L-elsbetiae_contig7038.15837.1|Name=mRNA_L-elsbetiae_contig7038.15837.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig7038:188..6240+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGGAACCCGGAGATCGTGGACCGCTTGACCGACGGCGTGAAGGAGTC
TCTCAAGAGGTGGAACCCGGAGATCGTGGACCGCTTGACCGACGGCGTGA
AGGAGTCTCTCAAGGCGTGCAACGTGACGGACTCTAACATCTTCGAGACG
AAGGTGCCCGGGGCGTTCGAGCTCCCGCTCGCCGCCCGGCGTGCAACGTG
ACGGACTCTAACATCTTCGAGACGAAGGTGCCCGGGGCGTTCGAGCTCCC
GCTCGCCGCCCGATTCCTCGCTCTGTCGCAGACGGTGGATGCCGTCGTGT
GCGTGGGCTGCCTCATCAAGATTCCTCGCTCTGTCGCAGACGGTGGATGC
CGTCGTGTGCGTGGGCTGCCTCATCAAGGGCGACACCATGCACTTCGAGT
ACATCGCGGAGTCAAGGCGACACCATGCACTTCGAGTACATCGCGGAGTC
AACGTGCCAGGGGCTGATGGATGTTTCCATCCTGACCGCGACGCCGGTAG
TGCTGGGAGTGCTCACGTGCACAGAAGAGGAGCAAGCGGTCAAGCGCTCC
ACGGGGGACAACAACCACGGGCGCGACTGGGCGTGCCAGGGGCTGATGGA
TGTTTCCATCCTGACCGCGACGCCGGTAGTGCTGGGAGTGCTCACGTGCA
CAGAAGAGGAGCAAGCGGTCAAGCGCTCCACGGGGGACAACAACCACGGG
CGCGACTGGGGCAAGACGGCGGTCGAGATGGGCCTCCTCCGTATGAGCGC
CACGGGTGCAAGACGGCGGTCGAGATGGGCCTCCTCCGTATGAGCGCCAC
GGGTGCGGGCGCGGCCCTCGGCTTCGGGAAGAGCTTAGACGAGGCCAAAA
AGGGCGACAAGGAGGGCAGCGTCACCGACAAGCCAAAGAAGATCGGCTTC
TAAGCGGGCGCGGCCCTCGGCTTCGGGAAGAGCTTAGACGAGGCCAAAAA
GGGCGACAAGGAGGGCAGCGTCACCGACAAGCCAAAGAAGATCGGCTTCT
AA
back to top