mRNA_L-elsbetiae_contig7020.15823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7020.15823.1
Unique NamemRNA_L-elsbetiae_contig7020.15823.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: D8LS34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS34_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.610e-41
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 1
Query:   13 QALFGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            QALFGFNPGVT+L+EFDHIDKRPTKP+TPGDRRASEALPIFEGSE V+GTATVLVAPGKKVDHLGIKAELIGQI
Sbjct:    2 QALFGFNPGVTILVEFDHIDKRPTKPSTPGDRRASEALPIFEGSEAVSGTATVLVAPGKKVDHLGIKAELIGQI 75          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A836CB39_9STRA (Vacuolar protein sorting-associated protein 26-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB39_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.410e-25
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   16 ALFGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            A FG  PG TVL+EFD  ++RP++   PGD++A E +PIF GSEPV+G  TVLVAPGKKVDH+GIK E+IGQI
Sbjct:    2 AWFGLQPGATVLLEFDGAERRPSRAPPPGDKKALERVPIFVGSEPVSGAVTVLVAPGKKVDHMGIKVEMIGQI 74          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A7S2UYV3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYV3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.180e-9
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   16 ALFGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            +LFGF P   + ++F     R  K      ++ S+ L IF G E V+GT  V++ PGK+++H GIK E+IGQI
Sbjct:    2 SLFGFGPAAEIRLDFADSATRTRKAVGAVGQKDSKQLLIFHGEEAVSGTVDVVLPPGKRLEHQGIKVEMIGQI 74          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A5J4XEX0_9CHLO (Subunit of retromer complex n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEX0_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.330e-9
Identity = 34/82 (41.46%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 MILQQALFG---FNPGVTVLIEFDHIDKRPTKPAT-PGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            M LQ+ LFG        TV +EF   D++P K A+  G    +E LP++   + V G   V   PGKKV+H GIK +L+GQI
Sbjct:    1 MFLQKGLFGGLTLGTNATVQLEFRRADRKPVKAASIKGKGSETEQLPLYTNKDSVVGEIRVANTPGKKVEHQGIKVQLLGQI 82          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A7S2C2A7_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2A7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.060e-9
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1
Query:   22 FGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQ 231
            FG      + I FD    RPTK    G       LPIF+  EP TG+  V V PGKK++H+GIK E++GQ
Sbjct:    7 FGSKSSDRIAISFDGGANRPTKRTGTGPTEV--VLPIFDNKEPFTGSVEVRVDPGKKLEHMGIKIEMVGQ 74          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A7S1CEN8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEN8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.510e-8
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   16 ALFGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            ++FGF P  T+ IE +  +KR  +     D      +P+F+ +E V+G  T++V   KK++H+GIK EL+G I
Sbjct:    2 SIFGFGPSATIDIELNGAEKRAMRRQETLDGTEGVDVPVFQDTEDVSGKVTLVVPGSKKLEHIGIKVELLGHI 74          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A0G4EAR0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EAR0_VITBC)

HSP 1 Score: 58.5 bits (140), Expect = 2.880e-8
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   28 FNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            F  G ++ ++FDH  +R   P    DR+  +AL I+   E V+G+A V + PGKK+DH G+K ELIGQ+
Sbjct:    8 FGSGCSLEVQFDHEPQRKMAPLG-RDRKGEKAL-IYSDGEDVSGSAMVSMKPGKKIDHQGVKIELIGQV 74          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: I0Z698_COCSC (Vacuolar protein sorting-associated protein 26 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z698_COCSC)

HSP 1 Score: 57.8 bits (138), Expect = 5.980e-8
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 1
Query:   25 GFNPGVTVLIEFDHIDKRPTKPAT-PGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            G   G TV +EF + D  P K AT       +E LP+F   + +TG   V   PGKK++H GIK +LIGQI
Sbjct:    9 GLGQGGTVQLEFKNDDGAPVKTATVKAGGGETETLPLFTNKDTITGEVKVANIPGKKLEHQGIKVQLIGQI 79          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: A0A7S0L8Y1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L8Y1_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.740e-7
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   46 VLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            ++I+FD+ D      +   + + SE L +F+G + V GT  V + PGKK+DH GIK ELIGQI
Sbjct:    1 IVIKFDNEDSMQMV-SMKNEHKDSEQLCLFQGKDTVGGTVEVNIKPGKKIDHTGIKIELIGQI 62          
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Match: W7TAJ9_9STRA (Vacuolar protein sorting-associated protein 26 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAJ9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.710e-7
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   16 ALFGF---NPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEPVTGTATVLVAPGKKVDHLGIKAELIGQI 234
            +LFG     P   V I+   ID+R  K  + G R  +  LP+++  E V G   V++APGKK++HLGIK EL+G I
Sbjct:    2 SLFGNLVGGPQARVNIKLTGIDQRMKKEMSSG-RGTTHLLPLYQAHEGVGGIVEVILAPGKKLEHLGIKIELVGAI 76          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7020.15823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS34_ECTSI3.610e-4193.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CB39_9STRA4.410e-2564.38Vacuolar protein sorting-associated protein 26-dom... [more]
A0A7S2UYV3_9STRA1.180e-941.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5J4XEX0_9CHLO1.330e-941.46Subunit of retromer complex n=1 Tax=Trebouxia sp. ... [more]
A0A7S2C2A7_9STRA8.060e-944.29Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1CEN8_9STRA1.510e-836.99Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0G4EAR0_VITBC2.880e-843.48Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
I0Z698_COCSC5.980e-843.66Vacuolar protein sorting-associated protein 26 n=2... [more]
A0A7S0L8Y1_9EUKA1.740e-744.44Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
W7TAJ9_9STRA3.710e-742.11Vacuolar protein sorting-associated protein 26 n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7020contigL-elsbetiae_contig7020:4720..5561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.6e-33
Seed eggNOG ortholog2880.D8LS34
Preferred nameVPS26B
KEGG rclassRC00055,RC00523
KEGG koko:K01876,ko:K18466
KEGG ReactionR05577
KEGG Pathwayko00970,ko04144,map00970,map04144
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0008104,GO:0008150,GO:0008565,GO:0009894,GO:0009966,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010646,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016055,GO:0016192,GO:0016197,GO:0016241,GO:0016482,GO:0016787,GO:0019222,GO:0023051,GO:0023052,GO:0030111,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034097,GO:0034341,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045087,GO:0045184,GO:0045185,GO:0045335,GO:0046907,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0051716,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071702,GO:0071705,GO:0097422,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0098876,GO:0198738,GO:1905114,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsKOG3063@1,KOG3063@2759
Ec32 ortholog descriptionVacuolar protein sorting protein 26 related
Ec32 orthologEc-08_001990.1
EC6.1.1.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Exons2
Model size239
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.8103817-CDS-L-elsbetiae_contig7020:4719..48661622816779.8103817-CDS-L-elsbetiae_contig7020:4719..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 4720..4866 +
1691683807.239619-CDS-L-elsbetiae_contig7020:4719..48661691683807.239619-CDS-L-elsbetiae_contig7020:4719..4866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 4720..4866 +
1622816779.8235264-CDS-L-elsbetiae_contig7020:5471..55611622816779.8235264-CDS-L-elsbetiae_contig7020:5471..5561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 5472..5561 +
1691683807.2605386-CDS-L-elsbetiae_contig7020:5471..55611691683807.2605386-CDS-L-elsbetiae_contig7020:5471..5561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7020 5472..5561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7020.15823.1prot_L-elsbetiae_contig7020.15823.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7020 4720..5561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7020.15823.1

>prot_L-elsbetiae_contig7020.15823.1 ID=prot_L-elsbetiae_contig7020.15823.1|Name=mRNA_L-elsbetiae_contig7020.15823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
MILQQALFGFNPGVTVLIEFDHIDKRPTKPATPGDRRASEALPIFEGSEP
VTGTATVLVAPGKKVDHLGIKAELIGQIG
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mRNA from alignment at L-elsbetiae_contig7020:4720..5561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7020.15823.1 ID=mRNA_L-elsbetiae_contig7020.15823.1|Name=mRNA_L-elsbetiae_contig7020.15823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=842bp|location=Sequence derived from alignment at L-elsbetiae_contig7020:4720..5561+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTTGCAGCAAGCTCTTTTCGGGTTCAACCCGGGAGTAACGGTGCT GATCGAGTTCGATCATATCGACAAGAGGCCGACCAAGCCGGCCACGCCGG GTGACAGACGAGCGTCGGAGGCCCTGCCTATCTTTGAGGGCTCTGAGGTA CGTATTGCGGTACCCATGCCGTCATGTTTTGCTGGTGCCGCACCTTCTCG CTGATTTGCTTCCATACATTGGCGGCAAGGCTATGTCTTGGGCTATCGTT CCATAGTGCAGCAAGCACGAAATAGCTGCAATAGTAAAAGCACTCCCTGC CAGACGAGCTTGGCCGTTGTCAAGGGTCGGAGGTGCGGTTTCCATCAACA TGTCTTTCTCCGTGCAGGGATAGATAGCTCTGTGTGTTGTGCCGTGCTTT CAAGGTCATGCCCACTTTCGTTTCGTTTTTTTTTTTCTTCTTACGGATAC CCACACTTTTTACCAGCTTTTTCGCATGATGGTGATGAGATATATTGCAC GTCACATGGTGCTAAATATATTTCAGTTTTTTTTGCAGAAATGAAAGAGA GTTGAATCGTCGAAGTCAGTAGTGAAACGTACATCCGATGCTGATATGGT CGGGGGGTCGCACACCAGAAGAAACGCGTGCATATTTAGCGGGCGCGAAG ACAGCATTCCTCGATTTTGTAGGAGTACTTCTGTATCCTTAAGTCGATCC GTATCCCGTCCTCGCCTGTAATGCGCGGTTCGTATTTTCCATCCGTTTTC AGCCTGTTACGGGCACGGCGACAGTTCTCGTGGCGCCGGGGAAGAAGGTG GACCACCTTGGGATAAAGGCCGAGCTCATCGGACAGATAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7020:4720..5561+

>mRNA_L-elsbetiae_contig7020.15823.1 ID=mRNA_L-elsbetiae_contig7020.15823.1|Name=mRNA_L-elsbetiae_contig7020.15823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig7020:4720..5561+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTTGCAGCAAGCTCTTTTCGGGTTCAACCCGGGAGTAACGGTGCT
GATCGAGTTCGATCATATCGACAAGAGGCCGACCAAGCCGGCCACGCCGG
GTGACAGACGAGCGTCGGAGGCCCTGCCTATCTTTGAGGGCTCTGAGATG
ATTTTGCAGCAAGCTCTTTTCGGGTTCAACCCGGGAGTAACGGTGCTGAT
CGAGTTCGATCATATCGACAAGAGGCCGACCAAGCCGGCCACGCCGGGTG
ACAGACGAGCGTCGGAGGCCCTGCCTATCTTTGAGGGCTCTGAGCCTGTT
ACGGGCACGGCGACAGTTCTCGTGGCGCCGGGGAAGAAGGTGGACCACCT
TGGGATAAAGGCCGAGCTCATCGGACAGATAGGCCCTGTTACGGGCACGG
CGACAGTTCTCGTGGCGCCGGGGAAGAAGGTGGACCACCTTGGGATAAAG
GCCGAGCTCATCGGACAGATAGGC
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