mRNA_L-elsbetiae_contig702.15819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig702.15819.1
Unique NamemRNA_L-elsbetiae_contig702.15819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig702.15819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig702contigL-elsbetiae_contig702:4955..5329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.4773734-CDS-L-elsbetiae_contig702:4954..52721622816779.4773734-CDS-L-elsbetiae_contig702:4954..5272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig702 4955..5272 +
1691683806.941764-CDS-L-elsbetiae_contig702:4954..52721691683806.941764-CDS-L-elsbetiae_contig702:4954..5272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig702 4955..5272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.4906926-UTR-L-elsbetiae_contig702:5272..53291622816779.4906926-UTR-L-elsbetiae_contig702:5272..5329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig702 5273..5329 +
1691683806.9540997-UTR-L-elsbetiae_contig702:5272..53291691683806.9540997-UTR-L-elsbetiae_contig702:5272..5329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig702 5273..5329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig702.15819.1prot_L-elsbetiae_contig702.15819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig702 4955..5272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig702.15819.1

>prot_L-elsbetiae_contig702.15819.1 ID=prot_L-elsbetiae_contig702.15819.1|Name=mRNA_L-elsbetiae_contig702.15819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
AIPEQIVGITRATKRDAEYIECCLIALGASSQPEFTTALLVPTDACLRTL
CRKTVYNFRRNDRDSCVHSVTILSKTSVKECRKYRVIISRNDVRSKIGEV
VHAGE*
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mRNA from alignment at L-elsbetiae_contig702:4955..5329+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig702.15819.1 ID=mRNA_L-elsbetiae_contig702.15819.1|Name=mRNA_L-elsbetiae_contig702.15819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig702:4955..5329+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCCCAGAACAGATAGTCGGCATTACGCGTGCCACAAAGAGGGACGC
TGAATATATAGAATGTTGCCTCATCGCTCTGGGAGCTAGCTCCCAGCCAG
AATTCACGACGGCGTTGTTAGTCCCGACCGATGCATGCTTGAGAACGCTT
TGCCGAAAAACGGTTTACAACTTTCGCCGTAACGACAGAGATTCATGTGT
ACATAGTGTTACGATATTGTCCAAAACTAGCGTAAAGGAATGCCGCAAAT
ATCGCGTCATAATAAGTCGAAATGATGTGCGATCGAAAATAGGCGAGGTG
GTTCACGCGGGCGAATAGCGATGAAAGTGTTAGTGTTGTAGTTCGAGGCA
CAACGTTGTCTTTTTTGTTGGCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig702:4955..5329+

>mRNA_L-elsbetiae_contig702.15819.1 ID=mRNA_L-elsbetiae_contig702.15819.1|Name=mRNA_L-elsbetiae_contig702.15819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig702:4955..5329+ (Laminarionema elsbetiae ELsaHSoW15)
GCAATCCCAGAACAGATAGTCGGCATTACGCGTGCCACAAAGAGGGACGC
TGAATATATAGAATGTTGCCTCATCGCTCTGGGAGCTAGCTCCCAGCCAG
AATTCACGACGGCGTTGTTAGTCCCGACCGATGCATGCTTGAGAACGCTT
TGCCGAAAAACGGTTTACAACTTTCGCCGTAACGACAGAGATTCATGTGT
ACATAGTGTTACGATATTGTCCAAAACTAGCGTAAAGGAATGCCGCAAAT
ATCGCGTCATAATAAGTCGAAATGATGTGCGATCGAAAATAGGCGAGGTG
GTTCACGCGGGCGAATAGGCAATCCCAGAACAGATAGTCGGCATTACGCG
TGCCACAAAGAGGGACGCTGAATATATAGAATGTTGCCTCATCGCTCTGG
GAGCTAGCTCCCAGCCAGAATTCACGACGGCGTTGTTAGTCCCGACCGAT
GCATGCTTGAGAACGCTTTGCCGAAAAACGGTTTACAACTTTCGCCGTAA
CGACAGAGATTCATGTGTACATAGTGTTACGATATTGTCCAAAACTAGCG
TAAAGGAATGCCGCAAATATCGCGTCATAATAAGTCGAAATGATGTGCGA
TCGAAAATAGGCGAGGTGGTTCACGCGGGCGAATAG
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