mRNA_L-elsbetiae_contig7011.15812.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7011.15812.1
Unique NamemRNA_L-elsbetiae_contig7011.15812.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7011.15812.1 vs. uniprot
Match: D7G7I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I0_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.050e-21
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    1 ALLAQGPEVESMRRRLEDKLAKERETTIGGMELKRLLRSSGLDLKAVETGYLRQKCGNASGQVDALALLAYLGPSER-----FGKDEGSDVSDGGLLPSTVLRGRAHE 309
            AL  + PEV S+RR+L+ ++AK +   IGG+ELK+LLRS GLDL   E  +LRQKCG+ +GQV+ LALLAYLGP+E      +G+++G       L P ++LRG AHE
Sbjct: 2167 ALKNREPEVASLRRQLQQRVAKRQRAVIGGLELKKLLRSCGLDLSPAEISHLRQKCGDPAGQVNTLALLAYLGPAESEAARAYGENDG-------LPPDSLLRGWAHE 2267
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7011.15812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7I0_ECTSI1.050e-2150.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7011contigL-elsbetiae_contig7011:5480..6615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog2880.D7G7I0
KEGG koko:K02183,ko:K14684,ko:K15100,ko:K16466
KEGG TC1.I.1,2.A.29.23,2.A.29.7
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko02000,ko03019,ko03036,ko04131,ko04147
Exons3
Model size331
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7011.15812.1prot_L-elsbetiae_contig7011.15812.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7011 5480..6615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.9096637-CDS-L-elsbetiae_contig7011:5479..56231622816778.9096637-CDS-L-elsbetiae_contig7011:5479..5623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 5480..5623 -
1691683806.5179207-CDS-L-elsbetiae_contig7011:5479..56231691683806.5179207-CDS-L-elsbetiae_contig7011:5479..5623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 5480..5623 -
1622816778.9285214-CDS-L-elsbetiae_contig7011:5785..59061622816778.9285214-CDS-L-elsbetiae_contig7011:5785..5906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 5786..5906 -
1691683806.529639-CDS-L-elsbetiae_contig7011:5785..59061691683806.529639-CDS-L-elsbetiae_contig7011:5785..5906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 5786..5906 -
1622816778.9388537-CDS-L-elsbetiae_contig7011:6550..66151622816778.9388537-CDS-L-elsbetiae_contig7011:6550..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 6551..6615 -
1691683806.5404365-CDS-L-elsbetiae_contig7011:6550..66151691683806.5404365-CDS-L-elsbetiae_contig7011:6550..6615Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7011 6551..6615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7011.15812.1

>prot_L-elsbetiae_contig7011.15812.1 ID=prot_L-elsbetiae_contig7011.15812.1|Name=mRNA_L-elsbetiae_contig7011.15812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
ALLAQGPEVESMRRRLEDKLAKERETTIGGMELKRLLRSSGLDLKAVETG
YLRQKCGNASGQVDALALLAYLGPSERFGKDEGSDVSDGGLLPSTVLRGR
AHERWANGS*
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mRNA from alignment at L-elsbetiae_contig7011:5480..6615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7011.15812.1 ID=mRNA_L-elsbetiae_contig7011.15812.1|Name=mRNA_L-elsbetiae_contig7011.15812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1136bp|location=Sequence derived from alignment at L-elsbetiae_contig7011:5480..6615- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTGCTGGCACAAGGACCGGAGGTGGAGTCCATGAGGAGACGACTCGA
AGACAAACTCGCCAAGTACGTATATTCTCCATGAAGAGTCGGGGCTTTGG
GGTTAGAGCTGATTGAGTCGGGTGTACATAGACAGATGGCCGTAGATCTG
GAGCTCTTTGAATCCAACGTGATTTTCGCCTAAACAGGATTCAGGCGAAT
TCGCCACTTCCACTTCCACGCTGAACAGCTGTAAGCAAGCAATGCATGCA
GCGTTTCTGAGAAAGCGTCGGCCCGGTCACACAACGTGGATATCGTTCGC
TTGAACTACAGTTTCAGTTGCTCATAGCACCTCTTACCTCAAACGGATTC
TCCCAACCAAGCATGAAAGTGCTCCTCTCAGTCTGTGTAAGTCGAGCGGT
TCCAATGTATCTCTGAAACCCTCGATCCATGCTGCGGTCTGCTGGTGTGG
CTGAACGCACTCCATTTTGATTCTCTTTGGCGTGTTTTTCACATCTTTGG
GGCGCTGCTTCATGTCTCTGTGACTACAACTACGACTCCTCAGTCATTGG
GCTATTAGACTGTGTAGGTGAGCTGAACCCATACAATCTTCTCCGTACAC
GTCACCTGGGCACACAAAAAACGATTCAATAACCGTTTTCACAAACCGAG
TTATCCGACCCCCGCTCGCGATGCTTATATGGTCACCCGTTCTACCTTTC
ACGATGCAGAGAGCGAGAGACGACGATCGGTGGAATGGAGCTCAAGCGCC
TCCTTCGGTCCAGTGGTCTCGACCTCAAGGCCGTCGAAACCGGCTACCTT
CGCCAAAAATGCGGAAATGCGTCAGGGCAGGTAAACCGGCGATACGCTCG
TCAAGCGTAACGATAGTCCGTATGTGAGAAAAATGTGCGGTTTCCAAAGC
CACCGCTGAGGTATTCGCGAGTTCAATCGTGTCCCCTTTCCGCCCTAAGA
ATGCTCATTGATCGTTCACACGAAATGGCACCGGCATAAAAGGTGGACGC
TTTAGCTCTTTTGGCCTACCTTGGACCATCGGAGCGCTTTGGCAAGGATG
AGGGGAGCGATGTTAGTGATGGCGGACTTCTCCCTAGCACCGTTCTGCGA
GGTCGGGCACACGAGAGGTGGGCAAACGGATCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7011:5480..6615-

>mRNA_L-elsbetiae_contig7011.15812.1 ID=mRNA_L-elsbetiae_contig7011.15812.1|Name=mRNA_L-elsbetiae_contig7011.15812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig7011:5480..6615- (Laminarionema elsbetiae ELsaHSoW15)
GCTCTGCTGGCACAAGGACCGGAGGTGGAGTCCATGAGGAGACGACTCGA
AGACAAACTCGCCAAGCTCTGCTGGCACAAGGACCGGAGGTGGAGTCCAT
GAGGAGACGACTCGAAGACAAACTCGCCAAAGAGCGAGAGACGACGATCG
GTGGAATGGAGCTCAAGCGCCTCCTTCGGTCCAGTGGTCTCGACCTCAAG
GCCGTCGAAACCGGCTACCTTCGCCAAAAATGCGGAAATGCGTCAGGGCA
GAGAGCGAGAGACGACGATCGGTGGAATGGAGCTCAAGCGCCTCCTTCGG
TCCAGTGGTCTCGACCTCAAGGCCGTCGAAACCGGCTACCTTCGCCAAAA
ATGCGGAAATGCGTCAGGGCAGGTGGACGCTTTAGCTCTTTTGGCCTACC
TTGGACCATCGGAGCGCTTTGGCAAGGATGAGGGGAGCGATGTTAGTGAT
GGCGGACTTCTCCCTAGCACCGTTCTGCGAGGTCGGGCACACGAGAGGTG
GGCAAACGGATCATGAGTGGACGCTTTAGCTCTTTTGGCCTACCTTGGAC
CATCGGAGCGCTTTGGCAAGGATGAGGGGAGCGATGTTAGTGATGGCGGA
CTTCTCCCTAGCACCGTTCTGCGAGGTCGGGCACACGAGAGGTGGGCAAA
CGGATCATGA
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