mRNA_L-elsbetiae_contig7006.15806.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7006.15806.1
Unique NamemRNA_L-elsbetiae_contig7006.15806.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7006.15806.1 vs. uniprot
Match: A0A835ZI17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI17_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   22 REAELRRNAENVKVHDTTAALARWALTSEKAAVRAERGRRLEAEKTEMELANIELVARRSARLKDLYNQLNDRYEMELHAKGLALA 279
            REAELR     V+ ++   A+++WA +SE    RA+  R  ++   E+   + EL ARR+ARL+DLY++     + ELH++GLA A
Sbjct:   24 REAELREARRAVEENNRIMAVSKWAQSSEAKVQRAKLLREAKSRAAELRDLSRELKARRTARLRDLYDRETLEVQAELHSRGLAFA 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7006.15806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZI17_9STRA1.110e-539.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7006contigL-elsbetiae_contig7006:7479..9609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4558
Ec32 orthologEc-17_004120.1
Exons4
Model size294
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7006.15806.1prot_L-elsbetiae_contig7006.15806.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7006 7479..9609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816778.0760758-CDS-L-elsbetiae_contig7006:7478..75331622816778.0760758-CDS-L-elsbetiae_contig7006:7478..7533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 7479..7533 -
1691683805.851221-CDS-L-elsbetiae_contig7006:7478..75331691683805.851221-CDS-L-elsbetiae_contig7006:7478..7533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 7479..7533 -
1622816778.088366-CDS-L-elsbetiae_contig7006:7870..80251622816778.088366-CDS-L-elsbetiae_contig7006:7870..8025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 7871..8025 -
1691683805.8641431-CDS-L-elsbetiae_contig7006:7870..80251691683805.8641431-CDS-L-elsbetiae_contig7006:7870..8025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 7871..8025 -
1622816778.1014228-CDS-L-elsbetiae_contig7006:8526..85771622816778.1014228-CDS-L-elsbetiae_contig7006:8526..8577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 8527..8577 -
1691683805.8747663-CDS-L-elsbetiae_contig7006:8526..85771691683805.8747663-CDS-L-elsbetiae_contig7006:8526..8577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 8527..8577 -
1622816778.1175961-CDS-L-elsbetiae_contig7006:9576..96091622816778.1175961-CDS-L-elsbetiae_contig7006:9576..9609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 9577..9609 -
1691683805.8878274-CDS-L-elsbetiae_contig7006:9576..96091691683805.8878274-CDS-L-elsbetiae_contig7006:9576..9609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7006 9577..9609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7006.15806.1

>prot_L-elsbetiae_contig7006.15806.1 ID=prot_L-elsbetiae_contig7006.15806.1|Name=mRNA_L-elsbetiae_contig7006.15806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MAARARAREAELRRNAENVKVHDTTAALARWALTSEKAAVRAERGRRLEA
EKTEMELANIELVARRSARLKDLYNQLNDRYEMELHAKGLALAKERA*
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mRNA from alignment at L-elsbetiae_contig7006:7479..9609-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7006.15806.1 ID=mRNA_L-elsbetiae_contig7006.15806.1|Name=mRNA_L-elsbetiae_contig7006.15806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2131bp|location=Sequence derived from alignment at L-elsbetiae_contig7006:7479..9609- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCACGGGCAAGAGCACGCGAAGCTGAGGTAGGCTGCTAGGCTAT
ATATTACTTCAGCAAACAAAAATTGGCGAACACCTACTACTACAATGTGC
ACTCTGTGCACGCTGGCGCCACGCAAAATGAAGATATCTGTGCATTTTTT
TTTTTTTTATTGTTGTCTCTAACTCCAGTCGTATACCCTTTGTGAGGGTA
CACACAGTGGCGTTGTAATCGAGTGGTTTGTTTCTATCCTGCATTTTATT
TTTTTTCTTCTTCTTCACATCATACATTTATTTCCAGTGCTCGATGGGCT
CCTTGTTGTCACGAGGGCGTCTTGCCAGAGAGTACTGAACTGTGGTCACA
TGGATACATAATAGCTAGGTACATAAGACTATGTAGTTGTACGACTGTAG
TCTACCCCGTACAGACCCGTGGTATCTTCACCCGGTGTGCTTCTCTACAT
ATGTTTTGGGTGTCTGCCCGTCGTCGCGTAACCGTAGCTGGCGGCTGGCA
TTTCGCATTTCATGGCGACACTCACATCCCGCGGCTGACTCCGCCAAGAA
GTAAAAAATCAGTGCCGGGCCCATCTCGGTTGTATCTCTACTGTGTAAGG
CGTAAAAATGTCACACTTCCTTCCAGAGGCCTTCAACTCGTTACCTAAAG
AGCGGCGAAGGGCTCTTTTGTTCCCTCTAGAGAAAGGCTTGGGAAGTGCT
TCACTCCAGAGGGCATTGCTACGAAAAGGCCCTCCCGAGGGCTACAAGTC
CCGACCCTCGCAGAGGGTTGCGTTTTGGGGGGGCTCCTTTGTGGCAGCCT
GAGCAGTCACATTTATGCAGGTGTGCCGCATGATGATTGAAACCATCTAC
CTTCACATCTAAGGATATACCAAGTATCTAGATAGACAGATATATCTAGA
TTAGACCGGCCGGGCCTGGGTTTACCGAGGCTCTGTTTGCCTCCACCAAA
AGCTAGATATATTCAGGCTCGTACATTTATTTACTGGCTTGCCTGATTAT
CTTTTCCGGAAACTCTCGACGGTGCGAAACAGTTACGCCGCAACGCGGAA
AACGTCAAGGTCCATGACACCACCGCCGCACTGGTAAGTGAGATGCCTAG
AGATATGTTTTCTACACACGCACACACGTCTCACTGTACCAGTTGTAGCC
ACCACGCACAACCTCGAAATCTCCGAGACTCCCTAGATACATAAGCTAGG
CATCTAGATCTTGAGAGATTGAAGGCTGCGTTTTATTTTATTTCTTCTCG
CGGATACCACGCTCAACATTTACCAAATACTCGGGCGAGGATCTGAGCAG
ATTTAGAAACGACGCACCGTCTTTGGTCGCCGCGTAGTAAATGCAGGTGG
TACATGTTTTCCGATCTAAATGTTTGATTGGGGGTAAATAGAGAGCTATG
TAGCCTACAGCAGTTCCTAGTATGTAGGTGTACCGTTTGCAGAGAGGTGC
GAGCAGTGGGATTCGTGCTGCCTGCAATATCTCCAACTCGCATAAGGTTA
CGTGTTGTACAGCAAAAAGAAGAGAGCACACGTGGTTTTCGGGGGATTAA
CACATTGAAGTTGCCGTCTTGCTTGTTGTGTCAGGCCCGGTGGGCCTTGA
CATCTGAAAAAGCAGCAGTCCGGGCAGAGCGAGGCCGGCGTTTGGAGGCC
GAAAAGACCGAAATGGAGCTCGCCAACATCGAACTGGTCGCCAGGCGTTC
CGCTCGACTCAAGGATCTATACAATCAGCTCAACGATAGGTAGGGGTGTG
GTATATTCTATCCAGCAATTGGCCTCTCATGCCTAAAGAGGGAAGAATGG
GACAGCAAGCAGATGTCAAGTAGAAAATAATAAAATCAACTTGCGCTTTC
CAAGGAGACTGAGAATGTGCGTTACTGTCGGGCTCACTTTTTTCAACGCC
GTTCTGGGGGTCCCCCTACGAAAGAAAAATCAGGCGACAGGCACAAAAAG
CGTATTTTGAGGTCGGAATGCTGGTGTTTTGGCTCTTCGCTGATGGTCCC
GCCATGCCCGATGTCGTCAACACTGTCAACCTCTCCGTTGCCTCTGCGCC
CCCTCCCAAAACCTGCCCACGTGTAGGTATGAGATGGAACTTCATGCCAA
AGGGCTGGCGCTCGCCAAAGAAAGGGCATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7006:7479..9609-

>mRNA_L-elsbetiae_contig7006.15806.1 ID=mRNA_L-elsbetiae_contig7006.15806.1|Name=mRNA_L-elsbetiae_contig7006.15806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig7006:7479..9609- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGCACGGGCAAGAGCACGCGAAGCTGAGATGGCTGCACGGGCAAG
AGCACGCGAAGCTGAGTTACGCCGCAACGCGGAAAACGTCAAGGTCCATG
ACACCACCGCCGCACTGTTACGCCGCAACGCGGAAAACGTCAAGGTCCAT
GACACCACCGCCGCACTGGCCCGGTGGGCCTTGACATCTGAAAAAGCAGC
AGTCCGGGCAGAGCGAGGCCGGCGTTTGGAGGCCGAAAAGACCGAAATGG
AGCTCGCCAACATCGAACTGGTCGCCAGGCGTTCCGCTCGACTCAAGGAT
CTATACAATCAGCTCAACGATAGGCCCGGTGGGCCTTGACATCTGAAAAA
GCAGCAGTCCGGGCAGAGCGAGGCCGGCGTTTGGAGGCCGAAAAGACCGA
AATGGAGCTCGCCAACATCGAACTGGTCGCCAGGCGTTCCGCTCGACTCA
AGGATCTATACAATCAGCTCAACGATAGGTATGAGATGGAACTTCATGCC
AAAGGGCTGGCGCTCGCCAAAGAAAGGGCATAGGTATGAGATGGAACTTC
ATGCCAAAGGGCTGGCGCTCGCCAAAGAAAGGGCATAG
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