mRNA_L-elsbetiae_contig7005.15805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig7005.15805.1
Unique Name	mRNA_L-elsbetiae_contig7005.15805.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: G4Z6K5_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6K5_PHYSP)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1

Query:    4 STDAMDGAAENGSLEVVKWLHQNRDEGCTGDALFCAAK 117
            STD MD AAENG L +VKWLH+NR EGCT +A+  AA+
Sbjct:    5 STDVMDAAAENGHLALVKWLHENRTEGCTANAMDYAAR 42

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A1W0A709_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A709_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.290e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1

Query:    1 CSTDAMDGAAENGSLEVVKWLHQNRDEGCTGDALFCAA 114
            C+TDAMD AA +G+LE+V +LHQNR EGCT   L  AA
Sbjct:   67 CTTDAMDDAAAHGNLELVMFLHQNRQEGCTDYGLLYAA 104

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A8J5ISE3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5ISE3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.410e-7
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1

Query:   16 MDGAAENGSLEVVKWLHQNRDEGCTGDAL 102
            MDGAAENG LE++KWLHQ RDEGC+  AL
Sbjct:    1 MDGAAENGHLEILKWLHQTRDEGCSSTAL 29

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A5D6YFK8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFK8_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.330e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1

Query:    1 CSTDAMDGAAENGSLEVVKWLHQNRDEGCTGDALFCAAKV 120
            CST AM+ AA N  L +VKWLH+NR EGCT  A+  AA +
Sbjct:  459 CSTKAMNNAARNNHLHIVKWLHENRSEGCTTAAMDAAASL 498

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A6H5LAV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAV9_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-6
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 1

Query:    7 TDAMDGAAENGSLEVVKWLHQNRDEGCTGDA 99
            T+AMD AA+NG L+V+ WLH+NR EGCTG A
Sbjct:   12 TEAMDEAAKNGHLDVLVWLHENRQEGCTGGA 42

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A8J5JD88_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JD88_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.630e-6
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 1

Query:   16 MDGAAENGSLEVVKWLHQNRDEGCTGDAL 102
            MDGAA NG L V+KWLH+NR+EGCT  A+
Sbjct:    1 MDGAAMNGHLNVLKWLHKNREEGCTTSAM 29

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: G4ZKU4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZKU4_PHYSP)

HSP 1 Score: 51.6 bits (122), Expect = 2.910e-6
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1

Query:    1 CSTDAMDGAAENGSLEVVKWLHQNRDEG 84
            C+TDAMDGAA NG LE+V WLH+NR EG
Sbjct:  291 CTTDAMDGAAANGHLEIVWWLHENRTEG 318

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A6A3JYA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JYA2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-6
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1

Query:    1 CSTDAMDGAAENGSLEVVKWLHQNRDEGC 87
            C+ +AMDGAA N  LEVVKWLH NR EGC
Sbjct:  464 CTAEAMDGAAANNHLEVVKWLHDNRTEGC 492

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A6A3L3X5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3L3X5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-6
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1

Query:    1 CSTDAMDGAAENGSLEVVKWLHQNRDEGC 87
            C+ +AMDGAA N  LEVVKWLH NR EGC
Sbjct:  464 CTAEAMDGAAANNHLEVVKWLHDNRTEGC 492

[Close]

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Match: A0A2P4WZW0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WZW0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.000e-6
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1

Query:   13 AMDGAAENGSLEVVKWLHQNRDEGCTGDA 99
            AMD AA+NG L+VVKWLH NR EGCT DA
Sbjct:    4 AMDNAAKNGYLDVVKWLHVNRTEGCTVDA 32

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig7005.15805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
G4Z6K5_PHYSP	1.180e-8	65.79	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
A0A1W0A709_9STRA	2.290e-7	63.16	Uncharacterized protein n=1 Tax=Thraustotheca clav...	[more]
A0A8J5ISE3_9STRA	4.410e-7	75.86	Uncharacterized protein n=1 Tax=Phytophthora aleat...	[more]
A0A5D6YFK8_9STRA	8.330e-7	57.50	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6H5LAV9_9PHAE	1.170e-6	67.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A8J5JD88_9STRA	2.630e-6	68.97	Uncharacterized protein (Fragment) n=1 Tax=Phytoph...	[more]
G4ZKU4_PHYSP	2.910e-6	75.00	Uncharacterized protein n=1 Tax=Phytophthora sojae...	[more]
A0A6A3JYA2_9STRA	2.920e-6	72.41	Uncharacterized protein n=4 Tax=Phytophthora TaxID...	[more]
A0A6A3L3X5_9STRA	2.930e-6	72.41	Uncharacterized protein n=1 Tax=Phytophthora fraga...	[more]
A0A2P4WZW0_9STRA	3.000e-6	75.86	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig7005	contig	L-elsbetiae_contig7005:9585..9734 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-05_000680.1
Exons	1
Model size	150
Cds size	135
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816778.0279331-CDS-L-elsbetiae_contig7005:9584..9719	1622816778.0279331-CDS-L-elsbetiae_contig7005:9584..9719	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7005 9585..9719 -
1691683805.823428-CDS-L-elsbetiae_contig7005:9584..9719	1691683805.823428-CDS-L-elsbetiae_contig7005:9584..9719	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig7005 9585..9719 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816778.0425055-UTR-L-elsbetiae_contig7005:9719..9734	1622816778.0425055-UTR-L-elsbetiae_contig7005:9719..9734	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig7005 9720..9734 -
1691683805.8371136-UTR-L-elsbetiae_contig7005:9719..9734	1691683805.8371136-UTR-L-elsbetiae_contig7005:9719..9734	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig7005 9720..9734 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig7005.15805.1	prot_L-elsbetiae_contig7005.15805.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig7005 9585..9719 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig7005:9585..9734-
coding sequence from alignment at L-elsbetiae_contig7005:9585..9734-

protein sequence of mRNA_L-elsbetiae_contig7005.15805.1

>prot_L-elsbetiae_contig7005.15805.1 ID=prot_L-elsbetiae_contig7005.15805.1|Name=mRNA_L-elsbetiae_contig7005.15805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
MDGAAENGSLEVVKWLHQNRDEGCTGDALFCAAKVRKVCMCMYVV

mRNA from alignment at L-elsbetiae_contig7005:9585..9734-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig7005.15805.1 ID=mRNA_L-elsbetiae_contig7005.15805.1|Name=mRNA_L-elsbetiae_contig7005.15805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig7005:9585..9734- (Laminarionema elsbetiae ELsaHSoW15)
TGCTCCACCGACGCCATGGACGGAGCCGCTGAGAACGGGTCTCTCGAGGT
GGTCAAGTGGCTGCACCAAAACCGCGACGAGGGGTGCACCGGGGACGCCC
TCTTCTGTGCGGCCAAGGTGAGAAAAGTATGTATGTGTATGTATGTTGTC

Coding sequence (CDS) from alignment at L-elsbetiae_contig7005:9585..9734-

>mRNA_L-elsbetiae_contig7005.15805.1 ID=mRNA_L-elsbetiae_contig7005.15805.1|Name=mRNA_L-elsbetiae_contig7005.15805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig7005:9585..9734- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGGAGCCGCTGAGAACGGGTCTCTCGAGGTGGTCAAGTGGCTGCA
CCAAAACCGCGACGAGGGGTGCACCGGGGACGCCCTCTTCTGTGCGGCCA
AGGTGAGAAAAGTATGTATGTGTATGTATGTTGTCATGGACGGAGCCGCT
GAGAACGGGTCTCTCGAGGTGGTCAAGTGGCTGCACCAAAACCGCGACGA
GGGGTGCACCGGGGACGCCCTCTTCTGTGCGGCCAAGGTGAGAAAAGTAT
GTATGTGTATGTATGTTGTC