mRNA_L-elsbetiae_contig700.15799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig700.15799.1
Unique NamemRNA_L-elsbetiae_contig700.15799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig700.15799.1 vs. uniprot
Match: D7G1X7_ECTSI (Major facilitator superfamily permease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X7_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 9.450e-32
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VAGMGMGADDMVASAHAMSIGVGEIIGPMIGGYVVELLPTSQAFACEPDAPIIELHDPIFQLAGELRP 204
            VAGMG GADDMVASAHAMSIGVGE+IGPMIGG+VVELLPTS AFACEPD PI++LHDPIFQLAGELRP
Sbjct:  255 VAGMGTGADDMVASAHAMSIGVGEVIGPMIGGFVVELLPTSPAFACEPDVPIVQLHDPIFQLAGELRP 322
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BLAST of mRNA_L-elsbetiae_contig700.15799.1 vs. uniprot
Match: A0A6H5KPD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.180e-31
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 VAGMGMGADDMVASAHAMSIGVGEIIGPMIGGYVVELLPTSQAFACEPDAPIIELHDPIFQLAGELRP 204
            VAGMG GADDMVASAHAMSIGVGE+IGPMIGG+VV+LLPTS AFACEP+ PI++LHDPIFQLAGE+RP
Sbjct:   42 VAGMGTGADDMVASAHAMSIGVGEVIGPMIGGFVVDLLPTSPAFACEPNVPIVQLHDPIFQLAGEIRP 109
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BLAST of mRNA_L-elsbetiae_contig700.15799.1 vs. uniprot
Match: A0A836CL52_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL52_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.130e-5
Identity = 21/52 (40.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 VAGMGMGADDMVASAHAMSIGVGEIIGPMIGGYVVELLPTSQAFACEPDAPI 156
            VA +G GAD +VA  H+++IG+GE++GP++GG+++E+   ++  +C P A +
Sbjct:  895 VAHLGRGADSIVAGVHSLAIGMGEVVGPLLGGFMMEMGRQTRVASCIPSAAL 946
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig700.15799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1X7_ECTSI9.450e-3289.71Major facilitator superfamily permease n=1 Tax=Ect... [more]
A0A6H5KPD6_9PHAE7.180e-3185.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CL52_9STRA2.130e-540.38Major facilitator superfamily domain-containing pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig700contigL-elsbetiae_contig700:14996..16263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig700.15799.1prot_L-elsbetiae_contig700.15799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig700 14996..16254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.5151854-CDS-L-elsbetiae_contig700:14995..152231622816777.5151854-CDS-L-elsbetiae_contig700:14995..15223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig700 14996..15223 -
1691683805.4417057-CDS-L-elsbetiae_contig700:14995..152231691683805.4417057-CDS-L-elsbetiae_contig700:14995..15223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig700 14996..15223 -
1622816777.525182-CDS-L-elsbetiae_contig700:16137..162541622816777.525182-CDS-L-elsbetiae_contig700:16137..16254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig700 16138..16254 -
1691683805.4518256-CDS-L-elsbetiae_contig700:16137..162541691683805.4518256-CDS-L-elsbetiae_contig700:16137..16254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig700 16138..16254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.5346375-UTR-L-elsbetiae_contig700:16254..162631622816777.5346375-UTR-L-elsbetiae_contig700:16254..16263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig700 16255..16263 -
1691683805.4627895-UTR-L-elsbetiae_contig700:16254..162631691683805.4627895-UTR-L-elsbetiae_contig700:16254..16263Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig700 16255..16263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig700.15799.1

>prot_L-elsbetiae_contig700.15799.1 ID=prot_L-elsbetiae_contig700.15799.1|Name=mRNA_L-elsbetiae_contig700.15799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MGMGADDMVASAHAMSIGVGEIIGPMIGGYVVELLPTSQAFACEPDAPII
ELHDPIFQLAGELRPLHHQFDSRDEGPADSSSEGPESGGASLPRPPPPRR
EDDQGLLDGAAAPVL
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mRNA from alignment at L-elsbetiae_contig700:14996..16263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig700.15799.1 ID=mRNA_L-elsbetiae_contig700.15799.1|Name=mRNA_L-elsbetiae_contig700.15799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1268bp|location=Sequence derived from alignment at L-elsbetiae_contig700:14996..16263- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCGGGCATGGGCATGGGGGCCGACGACATGGTGGCCTCGGCGCACGC
CATGTCCATCGGGGTGGGGGAGATCATTGGCCCGATGATCGGGGGCTACG
TCGTTGAGCTGCTGCCCACTTCGCAGGTGAGACAGAGAACCGCCTGCATA
CGCCGGAAATTGAGTTTTATGTAGGAAAATAACCCTAACCCTAACCCTAA
CCCCAACGACCGACCCCCCTTTTCCAGTTTCCATACATATGTACGATAGA
TGTGATGTAATAGTTTGTTCGCTGCGCGCCTCTCGAGAGAGCTACTTGTA
AGAGAGAGGGAGTCGGGGCGGCTCATGAAAATCTCGGATGCAGCGAGTCC
GGTTTGTGGTGATTGTTTGTTTTTTTTGCTACCGCCAGAGGTTGCTGCAG
GGTTGATTGGTTGAGGCTTGGATTTTTGCGCCCGCCGCTCTGAATTGACC
CCGCCTGCGGGTGTGGGCACGGCGGGGGTCCGATCCGAGGCCGGACTGCA
TGCATACATACACGTCTCTCCAGAGGCGTTGTCGTGTAGATACGCGCCCA
CACGCAGCAGCAGCGGCTATTGGCTTGATTGGGGGACAGGGCACGCTTGC
GCTGTACATACAGCGATATCCTCTTCAGCGGATCGTCTCAACAGGTTGCC
CTCCGCATTTTTTTTGCCTAGATACTTTTTTTTTTTATGTAGCTTATGCA
TTCGTCGTCTGCCCCACTGGCCCCCATACCCCACTACTAAGACTAGCTAG
ACGGCCCAACCGGGGCCACACAGCTTGCTGTTAAATAGACATTGCCCGAT
GCTTCGTTCACATTTTTGTTTTTTAGCACGCGCTTCCTTTCTTGCTTTGG
GCCCGCCGGCCACCGGCCTCGGGGGGGGAAACCCGCCGCAGGCGTTCGCT
TGCGAGCCCGACGCCCCCATCAGCTGGTCGTCTCAACAGGTTGCCCCCCG
CATTTGTTATTTAGACATTGCTCAATGCTTCGTCCACGTTTTTTTTTTTC
AACACGCGCTTCCTTTTGCGGGGGGAAAACCCCGCCGCAGGCGTTCGCTT
GCGAGCCCGACGCCCCCATCATCGAGCTGCACGACCCGATCTTCCAGCTG
GCGGGAGAACTGCGGCCGCTGCACCATCAGTTCGACAGCCGCGACGAGGG
GCCCGCCGACTCCTCTTCTGAAGGACCCGAGAGCGGGGGGGCTTCTTTGC
CGCGGCCGCCCCCGCCCCGCCGCGAGGACGACCAGGGCCTTCTCGACGGG
GCTGCCGCGCCGGTCCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig700:14996..16263-

>mRNA_L-elsbetiae_contig700.15799.1 ID=mRNA_L-elsbetiae_contig700.15799.1|Name=mRNA_L-elsbetiae_contig700.15799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig700:14996..16263- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCATGGGGGCCGACGACATGGTGGCCTCGGCGCACGCCATGTCCAT
CGGGGTGGGGGAGATCATTGGCCCGATGATCGGGGGCTACGTCGTTGAGC
TGCTGCCCACTTCGCAGATGGGCATGGGGGCCGACGACATGGTGGCCTCG
GCGCACGCCATGTCCATCGGGGTGGGGGAGATCATTGGCCCGATGATCGG
GGGCTACGTCGTTGAGCTGCTGCCCACTTCGCAGGCGTTCGCTTGCGAGC
CCGACGCCCCCATCATCGAGCTGCACGACCCGATCTTCCAGCTGGCGGGA
GAACTGCGGCCGCTGCACCATCAGTTCGACAGCCGCGACGAGGGGCCCGC
CGACTCCTCTTCTGAAGGACCCGAGAGCGGGGGGGCTTCTTTGCCGCGGC
CGCCCCCGCCCCGCCGCGAGGACGACCAGGGCCTTCTCGACGGGGCTGCC
GCGCCGGTCCTTGCGTTCGCTTGCGAGCCCGACGCCCCCATCATCGAGCT
GCACGACCCGATCTTCCAGCTGGCGGGAGAACTGCGGCCGCTGCACCATC
AGTTCGACAGCCGCGACGAGGGGCCCGCCGACTCCTCTTCTGAAGGACCC
GAGAGCGGGGGGGCTTCTTTGCCGCGGCCGCCCCCGCCCCGCCGCGAGGA
CGACCAGGGCCTTCTCGACGGGGCTGCCGCGCCGGTCCTT
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