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Homology
BLAST of mRNA_L-elsbetiae_contig70.15796.1 vs. uniprot
Match: D7G4G1_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G1_ECTSI) HSP 1 Score: 152 bits (385), Expect = 2.080e-39 Identity = 96/188 (51.06%), Postives = 117/188 (62.23%), Query Frame = 2
Query: 8 MDVSMLESQMSRGMAELGTAATVSAVPVSAVPQQQ------WTG-QPGYSPVTPVPAGQAPPIAGSSLDIQAIMNAGLMRGMLMHPAATTAAGPPQQVLMCNLCGNMDPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA-VGLVDPPHQXXXXXXXXXLSGSNYAGGVAY 547
+DVS+LE+ MS GMA+ G W Q GY+P+TP+ GQ P SS+D+QAIMNAG++RGMLM P A AAG +V+MCN CGNM+PNLF DAGQGYARCHGVYANGALCK I+PWPAGSLP+YK ++ QQ+A V ++P HQ G GG AY
Sbjct: 1232 VDVSLLEAHMSTGMADDGGVXXXXXXXXXXXXXXXXXXXXXWAAAQLGYAPLTPL-TGQTP----SSVDVQAIMNAGVIRGMLMPPPA--AAG---RVMMCNFCGNMNPNLFSDAGQGYARCHGVYANGALCKGIMPWPAGSLPQYKHDLG--QQDATVAALNPSHQVLQQQAGAAPGGYADVGGSAY 1407
BLAST of mRNA_L-elsbetiae_contig70.15796.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.480e-25 Identity = 57/102 (55.88%), Postives = 64/102 (62.75%), Query Frame = 2
Query: 245 AATTAAGPPQQVLMCNLCGNMDPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA-VGLVDPPHQXXXXXXXXXLSGSNYAGGVAY 547
AA P V+MCN CGNM+PNLF DAGQGYARCHGVYANGALCK I+PWP GSLP YK + QQ+A + +DP HQ G GG AY
Sbjct: 1235 AAQFGYAPLTPVMMCNFCGNMNPNLFSDAGQGYARCHGVYANGALCKGIMPWPVGSLPRYKHNLG--QQDATITALDPSHQVLQQQAGAAPGGYADVGGSAY 1334
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 155.2 |
Seed ortholog evalue | 3e-35 |
Seed eggNOG ortholog | 2880.D7G4G1 |
KEGG ko | ko:K09537 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | toxin transport |
EggNOG OGs | COG2214@1,KOG0691@2759 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko03110 |
Exons | 5 |
Model size | 568 |
Cds size | 561 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816777.1842709-CDS-L-elsbetiae_contig70:28309..28393 | 1622816777.1842709-CDS-L-elsbetiae_contig70:28309..28393 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 28310..28393 - |
1691683805.1940207-CDS-L-elsbetiae_contig70:28309..28393 | 1691683805.1940207-CDS-L-elsbetiae_contig70:28309..28393 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 28310..28393 - |
1622816777.1977003-CDS-L-elsbetiae_contig70:29383..29489 | 1622816777.1977003-CDS-L-elsbetiae_contig70:29383..29489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 29384..29489 - |
1691683805.2070363-CDS-L-elsbetiae_contig70:29383..29489 | 1691683805.2070363-CDS-L-elsbetiae_contig70:29383..29489 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 29384..29489 - |
1622816777.209655-CDS-L-elsbetiae_contig70:31927..32037 | 1622816777.209655-CDS-L-elsbetiae_contig70:31927..32037 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 31928..32037 - |
1691683805.2181299-CDS-L-elsbetiae_contig70:31927..32037 | 1691683805.2181299-CDS-L-elsbetiae_contig70:31927..32037 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 31928..32037 - |
1622816777.2221644-CDS-L-elsbetiae_contig70:32659..32779 | 1622816777.2221644-CDS-L-elsbetiae_contig70:32659..32779 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 32660..32779 - |
1691683805.2271554-CDS-L-elsbetiae_contig70:32659..32779 | 1691683805.2271554-CDS-L-elsbetiae_contig70:32659..32779 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 32660..32779 - |
1622816777.2336638-CDS-L-elsbetiae_contig70:33605..33746 | 1622816777.2336638-CDS-L-elsbetiae_contig70:33605..33746 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 33606..33746 - |
1691683805.2384877-CDS-L-elsbetiae_contig70:33605..33746 | 1691683805.2384877-CDS-L-elsbetiae_contig70:33605..33746 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig70 33606..33746 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816777.247836-UTR-L-elsbetiae_contig70:33746..33753 | 1622816777.247836-UTR-L-elsbetiae_contig70:33746..33753 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig70 33747..33753 - |
1691683805.247596-UTR-L-elsbetiae_contig70:33746..33753 | 1691683805.247596-UTR-L-elsbetiae_contig70:33746..33753 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig70 33747..33753 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig70.15796.1 >prot_L-elsbetiae_contig70.15796.1 ID=prot_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
MDVSMLESQMSRGMAELGTAATVSAVPVSAVPQQQWTGQPGYSPVTPVPA GQAPPIAGSSLDIQAIMNAGLMRGMLMHPAATTAAGPPQQVLMCNLCGNM DPNLFVDAGQGYARCHGVYANGALCKYILPWPAGSLPEYKPEIAITQQEA VGLVDPPHQQAGGGGGGGLSGSNYAGGVAYGHQPSYS back to topmRNA from alignment at L-elsbetiae_contig70:28310..33753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig70.15796.1 ID=mRNA_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5444bp|location=Sequence derived from alignment at L-elsbetiae_contig70:28310..33753- (Laminarionema elsbetiae ELsaHSoW15) GACCGCGATGGACGTGAGCATGCTGGAGTCGCAGATGTCTCGAGGCATGG
CGGAGCTTGGCACCGCCGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTG
CCGCAGCAGCAGTGGACGGGGCAGCCGGGCTACTCTCCCGTGACACCGGT
GAGGAAGGCGTCAGGAAAAACGCGGCTGTTGTTGTTGCTGTTTCTTCACA
TCAAAAACCGTTCCGATCCCTCCGCCAAGTATACCTCCAACACTTGATGC
GGTCAATTCCCGTGGTCACAGGCTACTAAATTGTAAACGAGGTTACGAAT
ACAATGGAGGGATGCTACTGTAGATATATTTGAATATTTAGTTCTCAAGC
GCCCATGTTGTGCGGGACAACCTCTCTCGCCCACTTTTCGTTCGTACTCG
GCGACATTTTTTTTCCCTCGCGCCTGTCTCGTTCGAAACATCGCTTTGCC
TCGGTAGTTTCGCCCGATGTGGTGTTTTTAACGGAGTGTTTCGCCGTATT
CTATCTACGTGATGTACGTATATGTATATATACGTCGGCGTGTTTCGACC
TTTTAGTATGGCCGGGCGCGCTTGTACCGTACTTTTTTTTTTTTTTTCTA
TGGCGTCGTCGAGTGTGCCCTGCTTTTTTGACCACGGTCCCTCATGGGTG
TTTTTTTAGATTAAATAGAGAGCTACTATGTATATAGAGAGCTACTATGT
ATCTGTTGTGAGAAACAACGACAGCAAATAACCCCCCGTGGCTTGTCGTA
CATACCCCAGACCCGTCTTGTCTCGCCAAGCCGAACAATATCGTGGCCGC
CCGCCCTTAACAGGTATTTGGTCCTTTCTACCGCCGCCTCCATTTCCTTT
TTCTGTCGTCCCTGCCTCGCTGTCTGCCCTCTCTTTCTCTCTCTATCTTC
TTCGCTCATGTTGATCTCCCCCCCCCTCCCCCCACCCCCTGATGTGATTT
TACCTGTGGGGCCTCTACGAAAAGGTCCCTGCTGGGCAGGCCCCCCCTAT
CGCCGGCTCTAGCCTAGACATCCAGGCTATCATGAACGCCGGATTGATGA
GGGGTATGCTGATGCACCCGGCGGCTACGACGGCTGCAGGCCCGGTGAGC
ACGTGGCTCCGAGCGCTGGGCAGGCGGGGCCCCCAGGATTTTCGACTCTT
AATTTACTTTCTATTTTCTGAACATGCCGCTTTTTGTTGACCGGCCAATT
CGCGTAAGATTTTGTTCACGTTGGAGGTATATCTACGTAAAGATGTTTTC
GCGTAAGATTTTGTGCAGTGCATGCAGGAGGTATCTATGATACGTGGATA
TGTTAACACGTAAGATTTTGTTCATGTTGGAGGTATTCACGTAAATATGT
TTTCCCTGGGGGTGGACGGGCGGGGAGAGGTGCAACACGCATTGCGTCCA
TCGAGTTTTTTTGTGTGTTTTTGGCAGGGTGGCCTTGGCTGCTGGTTTTC
CCTCTTTTCACGGCTGCGCGCACGTTCTGGCGCTGCTGCTGCCACTGCTG
TGTTCCCCTCCTGCCTGCTTTTGTTGCCCCTGTCCCACTGCTGATTTTGT
TACCCCTGCCCCACTGCTGCTGCACCTTCGTCTGACGCCTGGGTGGCTAG
ACTCAAGCACTCGCTATCGTCGAGAGTGCAGACGCACCACGCGTCTTCTT
ACTTCCATACTCACGCACGCACCGTCGTTCCTTCGACGTGTTAAACTTGG
CCCAAACCCTCGACAGCCGCAGCAGGTGCTCATGTGCAACCTGTGCGGGA
ACATGGACCCCAACCTCTTTGTGGACGCGGGGCAGGGGTACGCGCGCTGC
CACGGGGTGTACGCCAACGGGGCCCTGTGAGTAAATAGACCTCGCAAATC
TTAAATCTGTGCGGTGGAGATGTTGAACCCTTCTGATATTTGGGTTGTTT
TTCTGCTCGCTTCGCCAAATATTACGTCTCTGTATGGAATACCGTTTGGA
CCCCATATCGAGTCCTTGCTCTGGTGTGGGGGTAGGTTCCATCTTTGATT
CATTGTTTATTTTTAAATAGATGCACATGATACCGTGGAGACACCGCTCG
AATGCCGTCGTCCGGGGCTCTTGGCACCGCTACAACATGCCTGGATCATG
TCGACCAGTCGCTGGCCTTTCCCTTTTCGGGCTCCTCTGCGAGTCGATGC
TTCGAAGCTCATACCGTATTAAGGTGGCGCAAAATACCACCCACCCCCCG
GACGCATTTTCTAAGCTCGGTTCCTCCCCAGCGAGAAGAGTACCAGTGCC
GGAAGGGGGTGGCGTTGGAAGTATCTAGTCGAGGGCCGTCCGAGAGTGTG
TCGTTTGGTGCTGGCACCCTCTTCGTTACGGAGGAGTCGAGCTTTGAAGT
TCTTTCCAGGGGGGGTGGTGTCTTGCGTCACCTACGGTACTGCATACACA
TGGAGGATGGGTTTAGTCTAGGTTAGTTACCGTAGGTGACACAAGATACC
AAACCCCCTGGACATAATTTCAAAGCTCGATTCCTCTCCAGCAAGAAGAG
CGCCAGTGCCGAAAGGAGGTGGCGTTGGAAAGATCTAGTCGAGGGCTGTC
CGAAAATGTGGCGTTTGGTGCTGGCACCCTCTTCGTTACGGGGTAATGAA
GCTGTACAAATCGGTCCAGGGGGTGTGATATCTTGTGTCACCTACGGTAG
TCTCTTGATGTTCTTCCTCGGGTCGTGGGAACCAAGGCACAGCACACCTG
ACGCCTGCCGGCGTGTGCGCTTGGCCCCTTTGCTCCTTTTTTTTTGTCGG
TGTGCGGATGTGGAGCAATTTGCCTTCCCGCAGCATGATGCCCTTGCAGC
GGCAGAGAATCGTGACGCCGAGACGATCACACACACGACCCCGTCTGCAA
TAAAATGGCGGCATATAAGCCCGGGGTCGATTTGACAGTCTCGTATTTTG
CTTCCGTCTGCAACCAATGGCCACACGAGAACCCCGTGGTCGACTACCGT
AATCATGCGGGTCATCGCACCCCCGTGTTACGTAGCGTTTTTCTATAGCC
TATTTCTCCACAACCAGGAGGGTACCACTGCCGAAAAGGGTGATTTTCGA
AACGTCTCGTCGGGGGTTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCC
TCCTGGTTGTGGAGAAATACGCTGTAGAAAAACGCTAACACGGGGGTGCG
ATAACCCGCATGATCACGGTACAGCAGCCGTCTTACGCTTGCCGACCCCC
CTGAGCTTGCCAAATGCTGCATACTCTTCTTGCAACGGCCAGCGGTGACT
ACCAGCACAGCACTAAAAATAACAAGAAAACGCCTCTTTCTATTTCTTCC
TCTGCTTGTCTCAAGCTATAGAGCCCCACCGCTTTGTATCGCTAACCCCT
AATCTGCACCATAGGTGCCAAGTACATCCCGTATATGACACAAGATAACA
CACCCCCTGGACCGATTTCGAAAGCTCGATTGCTCGACAGCGAGAAGAGG
TCCAGTCCCGAAAAGGGCGGCGTTGGAAAGACCCCATCAAGAGCTGTCCG
AAAACGTGTCGTTTGGCATTAGAATCACAACTCGTTGCAGAGTAACCGAG
CTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTGTATCATATACGGTACA
TTTGACCGCCAAAGGCAACAGGCCTGTTGTTGTCGACGCCATAAATAATT
TCGCCCGACACTTGCCGATCGCGATGCCTATTATTCGTAAGCAACATAAT
ATCTAAATATGTTACATCAGGTCAATACGCGGAGTCAAAATATCACCACC
CCGCAGAGGGCTCATGTCAGAGGAGGAATTATGAGATACAGTAGTAGAAA
GCGTCTCGTCTTCGGAAAGAGACACAGTGTAGATGGCTGTAGCCTATCCC
TACAACTCTCCGCACGGCAAAAAAGAGCCGAGAACCTCGGAACACCTCTG
CTTTTAATTAATGCATACAAATGTCAGCAGCCTACGTCCAGTCTGTGAAA
AAGTCGTTCCAGAGGGAACTGTTGTAGGCATACTAACCCCTTTCTTTCCG
TCCAAGACATACTCGCACAAAATCCATAATCCATTTATACACAGTTCGTT
GGTGAAAAATTCATTTCGAACTGCTTTTGGGCTGGACTGTGAAAACATGC
GGGCATTTTTGGAAAGCCGACACAAACTTCAAGCGAGGCTCCGTGATGTT
CAGCGGGGGTATGCGATTATTCTTCGAGCAAGGCCTATACTGATCAATGG
GTACCCCTTCCCGCAGCCCTAACCTATCCCTACAACGGTGTCTGCGTAAA
TACATGCCTAACAGGTGCAAGTACATCTTGCCGTGGCCAGCCGGGTCGCT
CCCTGAGTACAAGCCGGAGATCGCCATCACTCAGCAGGAGGCGGTTGGTC
TCGTAGACCCCCCTCACCAGGTGAGGTGCCTCTCGTCCGTGTTTCGTTTT
GGTAATAATATTATTAATACTACCACCCTAGTCTTTTTCGTCGCTGTTTC
TTGCGTACTTTTCTGATGGTGCCGATAATGATAATCTTTCCGTTGCTGTA
TTTTGCGTAGGTTTCTCATAATAGTAATGATACTAGTCTTTTCGTTATTG
CTGTGTTTTTCATTGATGTATACAAATGTCAGCAAGCTACGTCCTCTCTG
AGAAAAAGTGGTATTTTTGCGTAGTTTTGGAGCTTTGAGGGGGGCTGGCT
ACTGTTTCGTCCTGTTGGGTGTTTGTTGTGTAACGTTTGGTCTTTGTGTT
GTTGTTGTTGTTAATACTTTGTACATAAAATGTTGGGATGTTTGTCGTTC
TTTGTCTGTTTGGAGATTGGGACGAGCTCAATATGGGTACTGCGTCGGGC
CTGCTAGCGTCGGTTGAAGGGAATAAACGACTTGGTCGTTTCGCACGCGT
ACAGAAATCCGTCATGGTGTAGTCTCTCTAGTCTCTCTGCACACAGCCCG
CCGCGACGCAGTTTCTTTTCAGCGTCGTCCATCTGTCGGGACCCGGTACC
ACTCCCCCGTCCACCCGGAAAAACAAACCTAAGAACGTTACACGGGTTGA
AGGTAGCATTCAACCAATCACGGGTGGACGCTATTGGGGCACTCTCCGCA
ACCACGTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCNNNNNNNNNNCCCGAAAAA
AAAAACAAAAAAACTTCCCCCGGGTGGAGGGACACTTCCACCAACCCCCG
GGGGGCCGCTTTGGGGCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCC
CCCCCACCCCACCCCGTCACCCGACTTTCGTCCCCGTTGCTACTTCCTCT
TGTCCCGATCCCACATGCGTACTCCTACGAAATAATATCCACAACCTGCG
ATTGCCACAGCAGGCCGGCGGCGGCGGCGGCGGCGGCCTCTCCGGCTCCA
ACTACGCGGGGGGCGTCGCCTACGGCCACCAGCCCTCGTACTCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig70:28310..33753- >mRNA_L-elsbetiae_contig70.15796.1 ID=mRNA_L-elsbetiae_contig70.15796.1|Name=mRNA_L-elsbetiae_contig70.15796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig70:28310..33753- (Laminarionema elsbetiae ELsaHSoW15) ATGGACGTGAGCATGCTGGAGTCGCAGATGTCTCGAGGCATGGCGGAGCT TGGCACCGCCGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTGCCGCAGC AGCAGTGGACGGGGCAGCCGGGCTACTCTCCCGTGACACCGATGGACGTG AGCATGCTGGAGTCGCAGATGTCTCGAGGCATGGCGGAGCTTGGCACCGC CGCCACGGTGTCTGCGGTGCCGGTGTCTGCGGTGCCGCAGCAGCAGTGGA CGGGGCAGCCGGGCTACTCTCCCGTGACACCGGTCCCTGCTGGGCAGGCC CCCCCTATCGCCGGCTCTAGCCTAGACATCCAGGCTATCATGAACGCCGG ATTGATGAGGGGTATGCTGATGCACCCGGCGGCTACGACGGCTGCAGGCC CGGTCCCTGCTGGGCAGGCCCCCCCTATCGCCGGCTCTAGCCTAGACATC CAGGCTATCATGAACGCCGGATTGATGAGGGGTATGCTGATGCACCCGGC GGCTACGACGGCTGCAGGCCCGCCGCAGCAGGTGCTCATGTGCAACCTGT GCGGGAACATGGACCCCAACCTCTTTGTGGACGCGGGGCAGGGGTACGCG CGCTGCCACGGGGTGTACGCCAACGGGGCCCTCCGCAGCAGGTGCTCATG TGCAACCTGTGCGGGAACATGGACCCCAACCTCTTTGTGGACGCGGGGCA GGGGTACGCGCGCTGCCACGGGGTGTACGCCAACGGGGCCCTGTGCAAGT ACATCTTGCCGTGGCCAGCCGGGTCGCTCCCTGAGTACAAGCCGGAGATC GCCATCACTCAGCAGGAGGCGGTTGGTCTCGTAGACCCCCCTCACCAGGT GCAAGTACATCTTGCCGTGGCCAGCCGGGTCGCTCCCTGAGTACAAGCCG GAGATCGCCATCACTCAGCAGGAGGCGGTTGGTCTCGTAGACCCCCCTCA CCAGCAGGCCGGCGGCGGCGGCGGCGGCGGCCTCTCCGGCTCCAACTACG CGGGGGGCGTCGCCTACGGCCACCAGCCCTCGTACTCCCAGGCCGGCGGC GGCGGCGGCGGCGGCCTCTCCGGCTCCAACTACGCGGGGGGCGTCGCCTA CGGCCACCAGCCCTCGTACTCC back to top
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