mRNA_L-elsbetiae_contig7.15782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI) HSP 1 Score: 187 bits (476), Expect = 2.190e-50 Identity = 107/227 (47.14%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 94 FMRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPGWA-SKLPFS--RGFRRTSRVAVTVGITKKSSNRGDRASCE---DSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVDFE 756 ++ +E KY TIV MALSH P VW+ NIRP RE + P S+ F +RR S + VG+ +N + E D RL IM +P R AFG+FC +SLC ESFQFLVDV +FK +++ ++A + +SF GF YLA+VNDYIKDGS SEVNI S TKR I+ F Y++L +++R++IF AE+ I VL DNL+NKF++S Y VVDFE Sbjct: 211 YVSMSPMEYKYYTIVLMALSHPPIVWLTNIRPVREVERNIPARRRSRKDFQLPSPYRRWSTKNIRVGVAADENNNSLPWNGEVYLDDNRLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK-DLIADSAAEETEKSFGGFGGYLAVVNDYIKDGSHSEVNIASTTKRSIMQHMKFTAYAALKLEDRKDIFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE) HSP 1 Score: 172 bits (435), Expect = 1.650e-44 Identity = 100/228 (43.86%), Postives = 132/228 (57.89%), Query Frame = 1 Query: 94 FMRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPG-------WASKLPFSRGFRRTSRVAVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVDFE 756 ++ E +Y I AL H P VW++NIRP E + P + PF R + RV V + A D+ RL IM +P R AFG+FC +SLC ESFQFLVDV +FK +++ ++A +SF GF YLAIVNDYIKDGS SEVNI S TKR I+ F Y++L ++ER+++F AE+ I VL DNL+NKF++S Y VVDFE Sbjct: 211 YLSMSPTEYQYCKITLTALLHPPIVWLINIRPVLEVGRNIPARRRSRKSFHLPSPFRRRSTKNIRVGVAADEDINTLPWNGEAYLNDN-RLTSIMNFQPLREAFGEFCRRSLCGESFQFLVDVEEFK-DLIADSAAETSEKSFGGFGGYLAIVNDYIKDGSHSEVNIASTTKRSIMQYMKFAAYAALQLEERKDLFGPAEREIKIVLADNLLNKFLVSDPYTKVVDFE 436
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.720e-35 Identity = 97/234 (41.45%), Postives = 128/234 (54.70%), Query Frame = 1 Query: 112 LERKYGTIVFMALSHTPTVWILNIRPAREALLHEP------GWASKLPFSRGFRR--TSRV---AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 L KY ++F+ +SH P VWILNIRP +E L H P G L S R TS + AVT +++ S R R S +S RLAGIM P R AFG+FC KSLCSESFQFL+D +F+ ++ D S + G +VN+YIKDG+ SE+NI S TKRDI+ ++SL R IF AE+ I ++L DNL+ +F+ S QY+ VD Sbjct: 208 LAFKYFFVIFITISHPPIVWILNIRPIQEVLHHAPRNSIPKGVQVLLALSSRRRGGITSTIVGEAVTPDVSQNPS-RHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVD 440
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI) HSP 1 Score: 140 bits (354), Expect = 2.240e-34 Identity = 101/270 (37.41%), Postives = 136/270 (50.37%), Query Frame = 1 Query: 7 QV*DLTAA*GKRRCLNIFVFPAIYVVIKLFMRP-DSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEP------GWASKLPFSRGFRRTSRVA-----VTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 ++ DL+ R + I + + V + + P +L KY ++V M LSH VWILNIRP +E L H P G L S R S A VT +T+ S G R S DS RLAGIM P R AFG+FC KS CSE FL+D +F+ ++ D S + G A+VN+YIKDG+ SE+NI S TK DI+ ++SL R IF AE+ I ++L DNL+ +F+ S QY+ VD Sbjct: 25 RIHDLSNMGRDIRLVGIILLICVPVFTAIQVLPLSTLAFKYFSVVSMTLSHPAIVWILNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVD 290
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 6.670e-29 Identity = 101/286 (35.31%), Postives = 139/286 (48.60%), Query Frame = 1 Query: 34 GKRRCLNIFVFPAIYVV--------IKLF-MRPDSLERKYGTIV-----FMALSHT-----PTVWIL--------NIRPAREALLHE------PGWASKLPFSRGFRR--TSRVA---VTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLE---------TAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 G LN+ FPA+++ ++LF M S KYG + L+ T VW+ NIRP +E L H G L S RR TS + VT +T+ S R DS RLAGIM P R AFG+FC KSLCSESFQFL+D +F+ V++E +A + + +VN+YIKDG+ SE+NI S TK DI+ ++SL R+ IF AE+ I ++L DNL+ +F++S QY+ VD Sbjct: 54 GNLEILNVVGFPALWIAEIALIMTALRLFVMYYPSTRAKYGRVTREKPWTCGLAATYLLVETVVWLAAAAQGIERNIRPIQEVLYHARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHS-REPYIDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRG-VIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVD 337
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.380e-28 Identity = 86/216 (39.81%), Postives = 112/216 (51.85%), Query Frame = 1 Query: 178 NIRPAREALLHEP------GWASKLPFSRGFRRTSRV----AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSE-----SFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 NIRP +E L H P G L S RR+S AVT +T S R R S DS RLAG+M P R AFG+FC KSLCSE SF+FL+D FK ++ D S + G +A+VN+YIKDG+ SE+NI S TK DI+ ++SL R+ IF AE+ I +L DN++ +F+ S QY+ VD Sbjct: 28 NIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRRSSAAIGGEAVTADVTHNPS-RHSRESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEISRCVSFRFLLDASKFKGVIVEGPVDGDANGSAEEEIEAPTHTSGLGDVVAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFASLDQDARKLIFVKAEREIKMILEDNIMARFLASAQYKRAVD 242
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI) HSP 1 Score: 118 bits (296), Expect = 1.180e-25 Identity = 104/297 (35.02%), Postives = 138/297 (46.46%), Query Frame = 1 Query: 49 LNIFVFPAIYVV--------IKLF-MRPDSLERKYGTIV-----FMALSHT-----PTVWIL--------NIRPAREALLHEP------GWASKLPFSRGFRRTSRV-----AVTVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSL------GMKE---------REEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 LN+ FPA+++ ++LF M S KYG + L+ T VW+ NIRP +E L H P G L S R S AVT +T+ S G R S DS RLAGIM P R AFG+FC KSLCSESFQFL+D +F+ ++ D S + G A+VN+YIKDG+ SE+NI S TK I+ ++SL G E R+ IF AE+ I ++L DNL+ +F+ S QY+ VD Sbjct: 74 LNLVGFPALWIAEIALVLTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVETVVWLAGAAQGTERNIRPIQEVLHHAPRNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 369
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI) HSP 1 Score: 111 bits (278), Expect = 7.980e-25 Identity = 70/168 (41.67%), Postives = 92/168 (54.76%), Query Frame = 1 Query: 277 TVGITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFK----------GFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 T +T+ S R R S DS RLAGIM P R AFG+FC KSLC ESFQFL D +F+ ++ D S + G A+VN+YIKDG+ SE+NI S K DI+ ++SL R IF AE+ I ++L DNL+ +F+ S QY+ VD Sbjct: 23 TSDVTQNPSQRS-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 189
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: D7G0P7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P7_ECTSI) HSP 1 Score: 107 bits (266), Expect = 3.450e-23 Identity = 77/204 (37.75%), Postives = 100/204 (49.02%), Query Frame = 1 Query: 178 NIRPAREALLHE------PGWASKLPFSRGFRRTSRVAVTVG-------ITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 NIRP +E L H G L S RR S + T+G +T+ S G R S DS RLAGIM P R AFG+FC KSLCSE G + + A+VN+Y+KDG+ SE+NI S TK +I+ T ++SL R+ IF AE+ I +L DNL+ KF+ S QY+ VD Sbjct: 4 NIRPIQEVLRHAGRNSIPKGVQMLLALSSRRRRGS--SSTIGGEEVISDVTQNPSQHG-RESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSE-----------------RRRGEGGTNTHERVGGVAAMVNEYVKDGAPSEINISSNTKHNIMELTKIEAFASLDQDARKLIFVKAEREIRSMLEDNLMAKFLASAQYKRAVD 187
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 112 bits (280), Expect = 6.110e-23 Identity = 78/230 (33.91%), Postives = 115/230 (50.00%), Query Frame = 1 Query: 97 MRPDSLERKYGTIVFMALSHTPTVWILNIRPAREAL-------LHEPGWASKLPFSRGFRRTSRVAVTVG-----ITKKSSNRGDRASCEDSCRLAGIMACEPFRAAFGDFCHKSLCSESFQFLVDVFDFKKEVLLETAGHDEARSFKGFRAYLAIVNDYIKDGSLSEVNIDSRTKRDILGCTTFNVYSSLGMKEREEIFSAAEKAISKVLMDNLVNKFMMSRQYRAVVD 750 M P ++ Y I+F+ VWI NI+P R+ L ++ G AS P+ R+ VA+ V TK SS++ +D +L I+ P AFG+FC K+LCSES FL DF + + A +D F + IV+ YI+DGS EVNI+S+TK IL T+ + + L + + I A K I K+L +NL NKF + Q++ + D Sbjct: 262 MVPATVLNFY-LILFLTTRFGTAVWITNIQPVRKVLQRRADHPINAGGIASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDD--KLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTI-----FARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKD 483 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7.15782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig7.15782.1 >prot_L-elsbetiae_contig7.15782.1 ID=prot_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp MRPDSLERKYGTIVFMALSHTPTVWILNIRPAREALLHEPGWASKLPFSRback to top mRNA from alignment at L-elsbetiae_contig7:1674..4255- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig7.15782.1 ID=mRNA_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2582bp|location=Sequence derived from alignment at L-elsbetiae_contig7:1674..4255- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig7:1674..4255- >mRNA_L-elsbetiae_contig7.15782.1 ID=mRNA_L-elsbetiae_contig7.15782.1|Name=mRNA_L-elsbetiae_contig7.15782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig7:1674..4255- (Laminarionema elsbetiae ELsaHSoW15)back to top |