mRNA_L-elsbetiae_contig6994.15777.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6994.15777.1
Unique NamemRNA_L-elsbetiae_contig6994.15777.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: D7FWY6_ECTSI (MORN repeat variant family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY6_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.860e-19
Identity = 41/45 (91.11%), Postives = 42/45 (93.33%), Query Frame = 1
Query:   22 DEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLV 156
            DEIHGRGRLTICPGSILEEVYDGDFVRG+KHG G YVYRK DGLV
Sbjct:  787 DEIHGRGRLTICPGSILEEVYDGDFVRGIKHGNGVYVYRKGDGLV 831          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A6H5KQH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 7.920e-16
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:   37 RGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLV 156
            RGRLTICPGSILEEVYDGDFVRG+KHG G YVYRK DGLV
Sbjct:  192 RGRLTICPGSILEEVYDGDFVRGIKHGHGVYVYRKGDGLV 231          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A2A4WZT9_9GAMM (Uncharacterized protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A4WZT9_9GAMM)

HSP 1 Score: 60.1 bits (144), Expect = 2.920e-8
Identity = 35/116 (30.17%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTH-QGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADGSFY 345
            Y G F + E HGRGRL +    I + +Y+G+F RG++ GRGTY +  +  L  G  +  + + QG+       + + + ++ +   N  ++ Y G + D   HG+G  R+  G  Y
Sbjct:   60 YFGNFRDGEFHGRGRLEVPISFIAKAIYEGNFDRGIRSGRGTY-WNGNGNLYIGQWRDDERNGQGSYFIGLAEWRENEHSEYWMKEN--VENYSGTFVDDFYHGEGTYRWPGGQKY 172          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A6L8CWV0_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8CWV0_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 5.670e-7
Identity = 34/113 (30.09%), Postives = 56/113 (49.56%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADGS 339
            YVGEF + E HG+GRL I    + EE+Y G++ RG++ GRG +   + +              GT       + + +  + +   N   + Y GD+ +   HGQG  R+A+G+
Sbjct:   61 YVGEFLDGEFHGQGRLEIPVSFVSEEIYTGEWNRGLREGRGKHWNGRGNLXXXXXXXXXXXXIGTYVFNLPEWRENENTEFWFKDN--TENYTGDFVNDHYHGQGTYRWANGT 171          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A2A5B1B2_9GAMM (Uncharacterized protein n=1 Tax=SAR86 cluster bacterium TaxID=2030880 RepID=A0A2A5B1B2_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 4.180e-6
Identity = 32/117 (27.35%), Postives = 54/117 (46.15%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADGSFYKG 351
            Y G+F + E HGRGRL I    + + +YDG++ +G++ GRGTY                             + + + ++ +   N   + Y G++ D    G+G+ R+ADG  Y G
Sbjct:   63 YFGDFRDGEFHGRGRLEIPISFVEKAIYDGNWNKGIRSGRGTYWNGTGSLXXXXXXXXXXXXXXXXFHNLPRWGENEHSEFWMKEN--TENYSGEFVDDNYQGKGIYRWADGRKYDG 177          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A7S1FPP1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPP1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.200e-6
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDG 150
            Y G F +D   GRG +T CPG++LEE YDG +    +HG+G   Y +  G
Sbjct:   11 YDGNFLDDVRCGRGTMTFCPGTVLEEKYDGSWENDRRHGQGRQTYDQRSG 60          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: C5LBL1_PERM5 (MORN repeat-containing protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LBL1_PERM5)

HSP 1 Score: 53.9 bits (128), Expect = 9.630e-6
Identity = 35/106 (33.02%), Postives = 50/106 (47.17%), Query Frame = 1
Query:   40 GRLTICPGSILEE--VYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADGSFYKG 351
            GR    P S ++E  VYDG ++ G+KHG G   +R  DG+              G +     SK ++   Y         YDG+WD G+R G+G +   DGS Y+G
Sbjct:  158 GRGVRRPRSWVKELEVYDGQWLHGLKHGEGRMEFR--DGVXXXXXXXXXXXXXXGVQVIDAASKTRLLYGYVK-------YDGEWDGGVRSGEGKIELTDGSVYEG 254          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A1E8CKL2_9GAMM (Uncharacterized protein n=1 Tax=Pseudohongiella acticola TaxID=1524254 RepID=A0A1E8CKL2_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 2.030e-5
Identity = 30/112 (26.79%), Postives = 48/112 (42.86%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADG 336
            Y G F + E HG+GR  +         Y+GD+V GV+ GRGTY     D  +                    ++  K ++ +   N  ++ Y G++ + L  G G  R+ DG
Sbjct:   61 YEGTFQDGEFHGQGRYEVMVSRSARAYYEGDWVMGVREGRGTYWNGVSDLYIXXXXXXXXXXXXXXXXXXXDWTPNKHSEHWLQNN--VENYTGEFVEDLYEGDGTYRWPDG 170          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A2D9DT51_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2D9DT51_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 2.860e-5
Identity = 39/121 (32.23%), Postives = 51/121 (42.15%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCH-YSKRKIAQKYQNINKC--------IQVYDGDWDDGLRHGQGLLRFADG 336
            Y G F + + HG GR            Y+GD+V GVK GRGTY   +D   +           G  R  R H Y    I  +  + NK         ++ Y GD+ D L  GQG  R+ DG
Sbjct:   63 YEGNFQDGKFHGHGRYERMISRFERAYYEGDWVLGVKEGRGTYWDGRDRLYI-----------GQWRNDRRHGYGSYFIGIEDWHPNKHSEHWLRENVENYTGDFVDDLYQGQGTYRWPDG 172          
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Match: A0A2E3U312_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3U312_9GAMM)

HSP 1 Score: 51.2 bits (121), Expect = 5.950e-5
Identity = 32/112 (28.57%), Postives = 48/112 (42.86%), Query Frame = 1
Query:    1 YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDGLVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGLRHGQGLLRFADG 336
            Y G F + E HG GR  I      +  YDGD+V GV+ GRGTY                            +++  K ++++   N  ++ Y G++ D L  G G  R+ DG
Sbjct:   74 YEGTFRDGEFHGHGRYEIMVSRSEQAYYDGDWVMGVREGRGTYWNGVSSLYXXXXXXXXXXXXXXXXXXVQNWTPNKHSEQWLQNN--VENYTGEFVDDLYQGYGTYRWPDG 183          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6994.15777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FWY6_ECTSI1.860e-1991.11MORN repeat variant family protein n=1 Tax=Ectocar... [more]
A0A6H5KQH2_9PHAE7.920e-1690.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2A4WZT9_9GAMM2.920e-830.17Uncharacterized protein n=1 Tax=SAR86 cluster bact... [more]
A0A6L8CWV0_9GAMM5.670e-730.09Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2A5B1B2_9GAMM4.180e-627.35Uncharacterized protein n=1 Tax=SAR86 cluster bact... [more]
A0A7S1FPP1_9STRA8.200e-644.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
C5LBL1_PERM59.630e-633.02MORN repeat-containing protein, putative n=1 Tax=P... [more]
A0A1E8CKL2_9GAMM2.030e-526.79Uncharacterized protein n=1 Tax=Pseudohongiella ac... [more]
A0A2D9DT51_9GAMM2.860e-532.23Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A2E3U312_9GAMM5.950e-528.57Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6994contigL-elsbetiae_contig6994:1386..2467 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue3.6e-17
Seed eggNOG ortholog2880.D7FWY6
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Exons2
Model size426
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.4112926-CDS-L-elsbetiae_contig6994:1385..15561622816775.4112926-CDS-L-elsbetiae_contig6994:1385..1556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6994 1386..1556 +
1691683803.9406314-CDS-L-elsbetiae_contig6994:1385..15561691683803.9406314-CDS-L-elsbetiae_contig6994:1385..1556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6994 1386..1556 +
1622816775.4216592-CDS-L-elsbetiae_contig6994:2212..24671622816775.4216592-CDS-L-elsbetiae_contig6994:2212..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6994 2213..2467 +
1691683803.9516058-CDS-L-elsbetiae_contig6994:2212..24671691683803.9516058-CDS-L-elsbetiae_contig6994:2212..2467Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6994 2213..2467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6994.15777.1prot_L-elsbetiae_contig6994.15777.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6994 1386..2467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6994.15777.1

>prot_L-elsbetiae_contig6994.15777.1 ID=prot_L-elsbetiae_contig6994.15777.1|Name=mRNA_L-elsbetiae_contig6994.15777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
YVGEFFEDEIHGRGRLTICPGSILEEVYDGDFVRGVKHGRGTYVYRKDDG
LVRGDLQVTDTHQGTGRKTRCHYSKRKIAQKYQNINKCIQVYDGDWDDGL
RHGQGLLRFADGSFYKGQFNRERKHGSGCMVWADGSQYQGK*
back to top

mRNA from alignment at L-elsbetiae_contig6994:1386..2467+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6994.15777.1 ID=mRNA_L-elsbetiae_contig6994.15777.1|Name=mRNA_L-elsbetiae_contig6994.15777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1082bp|location=Sequence derived from alignment at L-elsbetiae_contig6994:1386..2467+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTTGGCGAGTTTTTCGAGGACGAGATACACGGCAGGGGGCGGCTGAC AATCTGCCCCGGCTCCATCCTGGAGGAGGTCTACGACGGAGACTTCGTTC GAGGGGTGAAGCACGGCCGTGGCACCTACGTCTACCGCAAGGACGATGGG TTGGTGAGAGGAGACCTGCAAGTTATTTGGTGTTCGGCGTCCTTTTTCTC TAGCACGATGATTGAGCCTTCTTTTCGCTTGTGGTTGAATGGCACAAGGT GTATCCATGTATGTACATACATACGAAAACGTAGATTTATCATGCGAACA TGAGAGCCATCAGCACCAAACAGCAGCAGAGGCAAACAATAGCAGCCAAG GATACTGCAGCATCAGGGGTGGCAGCAGAATAACGACCACCCGAGTGTGC ACAAAGAAGGCTGCGAAAAATGTATCAGCATCAGCATGTATCTAGATATG TATGAAAGGTCTGCCGGGAGAAAAGTTCAGGACACACAGGCCTAAAGATC GAAATTTTGAGTTTTTGAGGGGAAGGGGGGGTCAGGGGGGGGGTATACTG TAGTCCACATACTTGCTAGGAGGCCCCGCAGATTCCAGTGGGGGTGGATG GGGGTGGTCGTTACATGTCCTTAAACAGACCCCCCCTGAACTAATTCCTT ATTAAAAAAATATCGAAATTTTGGGTCCCAGGGGGGGGGGGGCTATGTGT CCTGATTTTGTCTCCCGGCAGACCCTTGGTATGTATGTCTTTTTTCTCCG CAACAAGTTTTCGCTTTTCTTGATCGGAGGGCTGTATGTGGCTTATGTAC CTACCGCGACAGACACCGATACACCAGGTCACCGATACACACCAGGGCAC CGGAAGGAAAACGCGTTGCCATTATTCAAAACGAAAAATCGCCCAAAAAT ATCAAAATATCAATAAATGTATCCAGGTGTACGACGGCGATTGGGACGAC GGGTTGAGGCATGGCCAGGGCCTGCTCCGCTTCGCGGACGGTTCGTTCTA CAAGGGGCAGTTCAACCGCGAGAGGAAGCACGGAAGCGGCTGCATGGTGT GGGCAGACGGATCGCAGTACCAGGGAAAGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6994:1386..2467+

>mRNA_L-elsbetiae_contig6994.15777.1 ID=mRNA_L-elsbetiae_contig6994.15777.1|Name=mRNA_L-elsbetiae_contig6994.15777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig6994:1386..2467+ (Laminarionema elsbetiae ELsaHSoW15)
TACGTTGGCGAGTTTTTCGAGGACGAGATACACGGCAGGGGGCGGCTGAC
AATCTGCCCCGGCTCCATCCTGGAGGAGGTCTACGACGGAGACTTCGTTC
GAGGGGTGAAGCACGGCCGTGGCACCTACGTCTACCGCAAGGACGATGGG
TTGGTGAGAGGAGACCTGCAATACGTTGGCGAGTTTTTCGAGGACGAGAT
ACACGGCAGGGGGCGGCTGACAATCTGCCCCGGCTCCATCCTGGAGGAGG
TCTACGACGGAGACTTCGTTCGAGGGGTGAAGCACGGCCGTGGCACCTAC
GTCTACCGCAAGGACGATGGGTTGGTGAGAGGAGACCTGCAAGTCACCGA
TACACACCAGGGCACCGGAAGGAAAACGCGTTGCCATTATTCAAAACGAA
AAATCGCCCAAAAATATCAAAATATCAATAAATGTATCCAGGTGTACGAC
GGCGATTGGGACGACGGGTTGAGGCATGGCCAGGGCCTGCTCCGCTTCGC
GGACGGTTCGTTCTACAAGGGGCAGTTCAACCGCGAGAGGAAGCACGGAA
GCGGCTGCATGGTGTGGGCAGACGGATCGCAGTACCAGGGAAAGTGAGTC
ACCGATACACACCAGGGCACCGGAAGGAAAACGCGTTGCCATTATTCAAA
ACGAAAAATCGCCCAAAAATATCAAAATATCAATAAATGTATCCAGGTGT
ACGACGGCGATTGGGACGACGGGTTGAGGCATGGCCAGGGCCTGCTCCGC
TTCGCGGACGGTTCGTTCTACAAGGGGCAGTTCAACCGCGAGAGGAAGCA
CGGAAGCGGCTGCATGGTGTGGGCAGACGGATCGCAGTACCAGGGAAAGT
GA
back to top