mRNA_L-elsbetiae_contig6993.15776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6993.15776.1
Unique NamemRNA_L-elsbetiae_contig6993.15776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6993.15776.1 vs. uniprot
Match: D8LEK4_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK4_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 3.750e-94
Identity = 148/168 (88.10%), Postives = 157/168 (93.45%), Query Frame = 1 
Query:    1 KGAEEEFKDASEAYSVLGDTEQRRIYDRTLGARKADSSSSRRWADAAKKTKAQQPLYTARPPPGMKTHNEAEWKAWHYGVNAIQKEAFVQEANWLDLEGNRHQDYFRRQEKKEKALYGVGRGQKFNASRQRHDVIERVRLRREERLTRDRSRRPADKNAAEDDVCSIS 504
            KG+E+EFKDASEAYSVL DTEQRRIYDRTLG RK +SSS+R WADAAKKTKAQQPLYTA+PPPGMK HNE EWKAWHYGV+A+QKEAFVQEANWLDLEGNRHQ YFRRQEKKEKA+YGVGRG KFNASRQRHDVIERVRLRREERL RDRSRRPA+ NAA DDVCSIS
Sbjct:   39 KGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTR-WADAAKKTKAQQPLYTAKPPPGMKIHNEGEWKAWHYGVDAVQKEAFVQEANWLDLEGNRHQAYFRRQEKKEKAMYGVGRGHKFNASRQRHDVIERVRLRREERLKRDRSRRPAEDNAAADDVCSIS 205
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6993.15776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEK4_ECTSI3.750e-9488.10Heat shock protein 40 like protein/ DnaJ domain co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6993contigL-elsbetiae_contig6993:3681..7030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.5
Seed ortholog evalue7.9e-46
Seed eggNOG ortholog2880.D8LEK4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-23_002700.1
Exons3
Model size955
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6993.15776.1prot_L-elsbetiae_contig6993.15776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6993 5177..6582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.3351288-UTR-L-elsbetiae_contig6993:3680..38021622816775.3351288-UTR-L-elsbetiae_contig6993:3680..3802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 3681..3802 +
1691683803.8931732-UTR-L-elsbetiae_contig6993:3680..38021691683803.8931732-UTR-L-elsbetiae_contig6993:3680..3802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 3681..3802 +
1622816775.345897-UTR-L-elsbetiae_contig6993:5106..51761622816775.345897-UTR-L-elsbetiae_contig6993:5106..5176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 5107..5176 +
1691683803.9034216-UTR-L-elsbetiae_contig6993:5106..51761691683803.9034216-UTR-L-elsbetiae_contig6993:5106..5176Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 5107..5176 +
1622816775.378058-UTR-L-elsbetiae_contig6993:6582..70301622816775.378058-UTR-L-elsbetiae_contig6993:6582..7030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 6583..7030 +
1691683803.9313774-UTR-L-elsbetiae_contig6993:6582..70301691683803.9313774-UTR-L-elsbetiae_contig6993:6582..7030Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6993 6583..7030 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.3564076-CDS-L-elsbetiae_contig6993:5176..52531622816775.3564076-CDS-L-elsbetiae_contig6993:5176..5253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6993 5177..5253 +
1691683803.9123485-CDS-L-elsbetiae_contig6993:5176..52531691683803.9123485-CDS-L-elsbetiae_contig6993:5176..5253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6993 5177..5253 +
1622816775.3672755-CDS-L-elsbetiae_contig6993:6344..65821622816775.3672755-CDS-L-elsbetiae_contig6993:6344..6582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6993 6345..6582 +
1691683803.9228406-CDS-L-elsbetiae_contig6993:6344..65821691683803.9228406-CDS-L-elsbetiae_contig6993:6344..6582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6993 6345..6582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6993.15776.1

>prot_L-elsbetiae_contig6993.15776.1 ID=prot_L-elsbetiae_contig6993.15776.1|Name=mRNA_L-elsbetiae_contig6993.15776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MKTHNEAEWKAWHYGVNAIQKEAFVQEANWLDLEGNRHQDYFRRQEKKEK
ALYGVGRGQKFNASRQRHDVIERVRLRREERLTRDRSRRPADKNAAEDDV
CSIS*
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mRNA from alignment at L-elsbetiae_contig6993:3681..7030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6993.15776.1 ID=mRNA_L-elsbetiae_contig6993.15776.1|Name=mRNA_L-elsbetiae_contig6993.15776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3350bp|location=Sequence derived from alignment at L-elsbetiae_contig6993:3681..7030+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGCGCGGAGGAGGAGTTCAAGGATGCCTCGGAGGCGTACAGCGTACT
GGGCGACACGGAGCAACGACGGATATACGACAGAACCCTTGGGGCGCGCA
AGGCCGACTCGTCAAGCAGTAGGTACGGCCAGACCGACCCTGTGATTTTT
CAAGGCAGCAGACACGCCCGCGGGTAAATGTAGACACCTCCCACGAAGGA
CATATCCATGTAAGTTATTGTAGCCTGGGCCATGCTTTTCCCGCGAAGAT
TAGTAACCGTGCGTGATGTATTTTTTTACGTTTTTTACATTGATCCGGTG
GAGGAGCATATGCTTGCATCTTCATCCGGGCGTCGTTTTGCGGCACCGAT
AAAAAAACACGGGTCTTACATACAGCAGTATCGTAATACCAGCCAGGAGA
GTAAATAAATAGCATTGTACGTACACATGTATTGCAAGTACCTGGTACAT
ATGTAGTTTTGTTGCACGTGTGCATGCACGAACTATAAAATGCACAGACT
TACATACAAAATAAAGTATGTACACAGCGCGCCCGCACAGTACGACACAA
CCCTGCAAAATTGTAGTGAAGGAAGTCCAGCCTCTCAAAAATTCCCGAAA
ACTATGAAAGAACAAGCGGAGAAATCCTGCACTACTTGTAGATACTGTGG
CCCGTCGACGGAAACAGAACAGGAACCCCATTAGCCTCGCCCGAAATGTG
GTATATACACATCAAGGGGGCATGCGGGTTGCATCGCATGCCCTCTTGTA
CACATGGGTACATACCGTAGGTGACACAAGATACCACACCCCCTGGACAG
ATTTTCAAAGCTCGATTCCTCCCCAGCCAGAAGAGCGCCACTGCCGAAAG
GGATGGCGTTGGAAAGACCTAGTCGAGGGCTGTCCGAAAATGTGTCGTTT
GGTGCTGGCACCCTCTTTGTTACGGGGTAATGGAGCTCTAAAAGTCGGTC
CAAGGGGTGTGGTATCTTGTGTTACCTACGGTAGGAGGCTCGCAAGTGCG
GGTGGGTGCTCCCCCGATCTTGTACGCAGCTGAGCCGCCAGCACCAGCAA
GCTTTTCGGGGGCACCAACGACGCCAGCAAAAATAGTCGAGCCGTTTTTC
AGCTTTCGGGCCACCCGCCGCCCATGCGACAAAAGGCCGGCTGTTCGCTC
AACGTCGTCACGTCTGCTGCCTGCCGTGTCTCGCTGCTGGTTCATCCATC
CCCCCCCCCCCCCCCCCCCCCCTATGTACCCCTCCGCGCCCACCACACCA
CACACCTAGGAGAAAGAAAGGGGNNNNNNNNNNCCCCTGCCAACAAAGGG
CGGCCGGTCGCCCCCCGTCCTCCCGTCCGCGCGCCCCCCCGGCCCCCTGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATGTATCGTCTCGCGCGC
GCGCACACACACACGCACACGGCAAGAAGATGGGCGGACGCGGCGAAAAA
GACGAAAGCGCAGCAGCCCCTGTACACGGCCAGGCCGCCGCCCGGGATGA
AGACCCACAACGAGGCCGAGTGGAAGGCGTGGCACTACGGGGTCAACGCC
ATACAAAAAGAGGCGTTTGTGCAGTGAGTCGGGGGGGGGGGGGGGGGGGG
GGGGGGGTCGCCCGGGCCGAATGGACTAGGCTACACGGGCGGGCGGGTGC
TGTGTGTTTTTCTTCTTTCTTCNNNNNNNNGGGGGAGGGGGGAGGGAGAG
GGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGTTCGCCCGAGCCGAATGGACTAGGCTACACG
GACGGTCGGTTGCTGTGTGTTTTTCTTCTATCTACGGTCTCAACTGTTGG
CAAGTTCTGGCGGGTTGTGTGGAGTGTATGCATGCATCCCTTGTATGATA
CTTCGAAATAGTATTTAACTCTAGGAGTATGTCTGTAGCCTCGCTGTGGT
GTTTTACCTTGGGAAATATGTAGAAGTAGATAGATACGAACGTGCAACTA
TTTAGCCACGAGTTTTGTTGCACAGGGAATGCAAGAATACTTTCCGTTGA
CACGGTGTGCGCGCCCTGTGTCCACGCCGGCATCACCCGTCTGAGTTCAT
GTGCCCTGCCTGCTTCCGCAGGAGATGGTTTCGAATTTATCACACGCTCG
CGGCATGCTTGTGTGCTGTATGTAGTTGCGTACATATGTACACCATAAGT
GTTCGAGTCATCGCACACCCCCTGGACCGGCTTTCAAGGCTCGATTACCC
CACGGCAAGAAAAGTGTAAGTACCGACAAGGGCGGCGTTGGAAATATCTC
GTCGATAGCTGTCCGAAAACTTGTCGTTTGGTGTCGGCATCCCTCTTCGT
TACGGACTAATCGAGCTCTAACAATCCACCGCACCCCTTGTGCGATCACT
CGAACACCTACAGCATGCACGATCGCAACGCGGTCCTATTGCTCGCGATA
TCATTTTGCGTTGGTCCTAACATACATGCACAATAAATATCTTGTTTCCA
CAAGCCACGGGTGTGTGTGTGTCTCCTCGACGCATTTCTTGCCGCGCTTT
GCCAACGTTCGTGAAGAACCACCGCCCCCCCCCATCAAAACAGCCTTCCC
TCCCCCCCACCTCCCCACGCGCACCTCATTCTTACCCCTCTGCCCCCCTC
CACGCGCGGCGCAGGGAGGCGAACTGGTTAGATCTAGAGGGCAACAGACA
TCAGGACTACTTCCGCAGGCAAGAGAAGAAGGAGAAGGCGCTGTATGGGG
TGGGCAGGGGGCAGAAGTTTAACGCCTCGCGGCAGCGGCACGATGTGATT
GAGAGAGTGCGGCTGAGGAGGGAGGAGAGGCTGACACGTGACCGATCGCG
CCGTCCCGCGGATAAGAACGCCGCGGAAGACGATGTTTGTTCCATTTCCT
GACAGCAAAACCCTGGCGGGGGGCACGAAGTCGAAATATTTTGTCGGTTT
GTGATGTGCGGGTTGTTATAATTTGGCCGCTGATGACGAGTGCTTGTAGG
ATAACATCGGCTCGGACGTCGAGTGTTCTCCATTTCGTTCCTTTTTTTTT
GCTGCTGTTTGGTTCTGGCTTGATTAACTACTGCCGTGTAAAGGTGTCAT
TCTTTGGTGACACACTGGCTGTATCCGTCCCCCTCAATTTTTCTGGGCTA
TGTTTCGTTTCTATTAGAGCGACCGTTTTCGGGCGATTTTTCGGGGTCGG
CCGACCGTTGTTGGGTGTGCTCTTGGGCACACCCGCCGGTTGAAACATAT
TTGGTTGGTTCTTTCGGGCCTTTTGTTTGAGCACTATCTTTTCTTGTGAT
GGAAAATTTTCAAATCCCTTTCAGATTTTTTTCAAAAAGTGACCCCTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6993:3681..7030+

>mRNA_L-elsbetiae_contig6993.15776.1 ID=mRNA_L-elsbetiae_contig6993.15776.1|Name=mRNA_L-elsbetiae_contig6993.15776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6993:3681..7030+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACCCACAACGAGGCCGAGTGGAAGGCGTGGCACTACGGGGTCAA
CGCCATACAAAAAGAGGCGTTTGTGCAATGAAGACCCACAACGAGGCCGA
GTGGAAGGCGTGGCACTACGGGGTCAACGCCATACAAAAAGAGGCGTTTG
TGCAGGAGGCGAACTGGTTAGATCTAGAGGGCAACAGACATCAGGACTAC
TTCCGCAGGCAAGAGAAGAAGGAGAAGGCGCTGTATGGGGTGGGCAGGGG
GCAGAAGTTTAACGCCTCGCGGCAGCGGCACGATGTGATTGAGAGAGTGC
GGCTGAGGAGGGAGGAGAGGCTGACACGTGACCGATCGCGCCGTCCCGCG
GATAAGAACGCCGCGGAAGACGATGTTTGTTCCATTTCCTGAGGAGGCGA
ACTGGTTAGATCTAGAGGGCAACAGACATCAGGACTACTTCCGCAGGCAA
GAGAAGAAGGAGAAGGCGCTGTATGGGGTGGGCAGGGGGCAGAAGTTTAA
CGCCTCGCGGCAGCGGCACGATGTGATTGAGAGAGTGCGGCTGAGGAGGG
AGGAGAGGCTGACACGTGACCGATCGCGCCGTCCCGCGGATAAGAACGCC
GCGGAAGACGATGTTTGTTCCATTTCCTGA
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