mRNA_L-elsbetiae_contig6992.15774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6992.15774.1
Unique NamemRNA_L-elsbetiae_contig6992.15774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6992.15774.1 vs. uniprot
Match: A0A6H5JWA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.590e-28
Identity = 138/300 (46.00%), Postives = 157/300 (52.33%), Query Frame = 1 
Query:   13 MSGRGGDAWEGEPRVIYHDVLDRIESLKTSRS------------------------------DDXXXXXXXXXXXXXNPSTNSEKRFVTFLFDLPPPEPFGETSGGGGGLPVISIIDAKGKERRKYYRRRELGPLEVGSVIVLRDRNLGTPLAAYFVGEEVDQMLIAGNGVACSPTLLGGNYREDW----ADEESERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------IQLANKKRAALSREAALRELVGVGHGDGRDGTDDGGGDGAARGGLGAHELFRQV 759
            MS R G  WEGE RVIY DV  R+  L+  R+                                XXXXXXXX     N   +S KRFV+ +FD P     G  +     LP   ++DA GKERR  Y   ++GPL+VGSVIVLR    G  LAAY VGEE  Q+ I GNGVAC+PTLLG  +  D     A +ES RGXXXXXXXXXXXXXXXXXXXXXXX                          Q  N +RAA  R  ALRELVG+G G G  GT +GG  G ARG   AHELFRQ 
Sbjct:    1 MSAREG--WEGESRVIYEDVGARVSRLQARRAAAYFAGRKRESEKHVAGNNGGDKDIGSGSXXXXXXXXXXXRSGRGNALGSSGKRFVSLMFDPP-----GRYNEARHQLPEAFVVDATGKERRMPYYGLDIGPLDVGSVIVLRGAPRGQHLAAYLVGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDASQESGRGXXXXXXXXXXXXXXXXXXXXXXXNGDDARRKPSAGKTRLSSSPDSGSRSQAKNLERAAHIRGEALRELVGIG-GGGAGGTSNGG-SGEARGAT-AHELFRQA 290
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BLAST of mRNA_L-elsbetiae_contig6992.15774.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.250e-8
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  214 EPFGETSGGGGGLPVISIIDAKGKERRKYYRRRELGPLEVGSVIVLRDRNLGTPLAAYFVGEEVDQ 411
            +P G  +G    LP   ++DA GKERR  Y   ++GPL+VGSVIVLR    G  LAAY VGEE  Q
Sbjct:    3 DPPGRYNGARHRLPEAFVLDATGKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYLVGEEEHQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6992.15774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWA9_9PHAE6.590e-2846.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LMU4_ECTSI8.250e-851.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6992contigL-elsbetiae_contig6992:248..2830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size762
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6992.15774.1prot_L-elsbetiae_contig6992.15774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6992 248..2818 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.192755-CDS-L-elsbetiae_contig6992:247..5391622816775.192755-CDS-L-elsbetiae_contig6992:247..539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 248..539 -
1691683803.7683048-CDS-L-elsbetiae_contig6992:247..5391691683803.7683048-CDS-L-elsbetiae_contig6992:247..539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 248..539 -
1622816775.2060823-CDS-L-elsbetiae_contig6992:891..9501622816775.2060823-CDS-L-elsbetiae_contig6992:891..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 892..950 -
1691683803.7852392-CDS-L-elsbetiae_contig6992:891..9501691683803.7852392-CDS-L-elsbetiae_contig6992:891..950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 892..950 -
1622816775.216387-CDS-L-elsbetiae_contig6992:2419..28181622816775.216387-CDS-L-elsbetiae_contig6992:2419..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 2420..2818 -
1691683803.8004625-CDS-L-elsbetiae_contig6992:2419..28181691683803.8004625-CDS-L-elsbetiae_contig6992:2419..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6992 2420..2818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.2299216-UTR-L-elsbetiae_contig6992:2818..28301622816775.2299216-UTR-L-elsbetiae_contig6992:2818..2830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6992 2819..2830 -
1691683803.8092265-UTR-L-elsbetiae_contig6992:2818..28301691683803.8092265-UTR-L-elsbetiae_contig6992:2818..2830Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6992 2819..2830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6992.15774.1

>prot_L-elsbetiae_contig6992.15774.1 ID=prot_L-elsbetiae_contig6992.15774.1|Name=mRNA_L-elsbetiae_contig6992.15774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
MSGRGGDAWEGEPRVIYHDVLDRIESLKTSRSDDDDNNNNNGNGNGNNPS
TNSEKRFVTFLFDLPPPEPFGETSGGGGGLPVISIIDAKGKERRKYYRRR
ELGPLEVGSVIVLRDRNLGTPLAAYFVGEEVDQMLIAGNGVACSPTLLGG
NYREDWADEESERGRGEGPLGGGSGSGSGSRREASSGESPPSPSPIQLAN
KKRAALSREAALRELVGVGHGDGRDGTDDGGGDGAARGGLGAHELFRQV*
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mRNA from alignment at L-elsbetiae_contig6992:248..2830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6992.15774.1 ID=mRNA_L-elsbetiae_contig6992.15774.1|Name=mRNA_L-elsbetiae_contig6992.15774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2583bp|location=Sequence derived from alignment at L-elsbetiae_contig6992:248..2830- (Laminarionema elsbetiae ELsaHSoW15)
TGTGGAAGGGGCATGTCAGGGCGCGGTGGCGACGCGTGGGAGGGAGAGCC
GAGGGTGATATACCACGATGTCCTCGACAGGATCGAAAGCCTGAAAACCA
GCAGGAGCGACGACGACGACAACAACAACAACAACGGCAACGGCAACGGC
AACAACCCCAGCACAAACAGCGAAAAACGATTCGTTACCTTCTTGTTCGA
CCTGCCGCCGCCGGAGCCTTTCGGCGAGACGAGTGGCGGCGGCGGCGGCC
TGCCGGTGATCTCGATCATCGACGCCAAGGGCAAGGAGAGGCGGAAGTAC
TACCGCCGCCGCGAACTCGGGCCTCTGGAGGTCGGATCCGTGATCGTCCT
GAGGGACCGAAATCTTGGCACGCCTCTGGCGGCGTACTTCGTGGGGGAGG
AGGTGGATCAGGTATTGTGTGTACAAACGCGCGTGACACAAGATAACACA
CCCCCTGGACCGATTTCCAAAGCCCCAAGTATGTATGTACCGTATACCAC
ACAAGATAACACCCCCCCCGGTGATACATATTTTCGTTTAAAAAATATTA
TCACCCAGGGTGATTTCTAAAATAAAACAATCAAAGATGGAAACTAACCC
ATACTAGAGCAGAGACTCGATATGGGGTTCAAATGGTATTCCATACAGAG
ACGTAATATTTGGCGAAGCGAGCAAAAAAAACAACCTAAATATCAGAAGA
ATTCAACATCTCCCCTGCAGAGAATTAGATGTGCGAGGTCGGCCAACTAT
TTTTCAGCGGGTAGAGCGGGGTGATATCTTCCGTGGCACGGGTGGTAACC
TCGCGGTCGGGAAAGCTATCCAGGAGGTGTGATAACCAGGGGGTGTGATA
TCACTGCCTGCTCGGACTGCTGCTGCGGCGTCTACAAGGGGTGTGATACC
CAGGGGATGTGATAACGAGGGGGTGTGATAAGGGCAGGGTATAATTTCAC
TCACCGCGAAGACTGCTGCTGCAGCGATGGAAGGGGTGTGATAACCAGAG
GGTGTGATAAATCATGACGGCGGGGTGTGATAAAACTTCGCGCGAATGTC
TACTCAGCCTACTTTGAAAATGCTAATACTAAGGGGGACACCAATACGGA
CTACTGCTGTACACCATCTACTCTCGTTGAAACCAAGATGGTATCCATGT
AACGTGATCCTCCGCACACGAACTGTGATGCGCGGCGGTCGTGCGCCACC
GATCACCCGGGTGATAGTAGAGGCTCCGCGGTTTTATGCGGCGTAACTTC
AGGGGGAGTGTTATCTTCCATGGCCGGGGGTGATAAATAGCAGTTTCAAT
CTGCGGCTAAAAATATTACCACGGGGGTGATTTCTAGGGGGGGTGATATC
TTCCGTGGGGGTGGTATCTTGTGTGGTATACGGTATGCACTCCACAGAGC
GAGAAGAGTGTCAGTCCCGAAAAGGTCGGCGTTAGAAATGTCTCATCAAG
AGCTATTGTCGCTGTCCGAAAACGTGTCGTTTGATATCAGAACCAAACTC
ATTGCGGAGTAGCCAAGCTTTTGAAAATCGGACCAGAGGGGGTGTGTTAT
GTGTCGTATTCGGTAACCAAGTAGTACATTTGAAACCGCAGGATATTGGG
TTTTGCAGAGTCCGGCGGGGATCAGTATTTTTGGCTGTTCCCGTTTTTTT
GTTGGGGCCCAGGGGAGGCCGTTTCCCCGGAATCTGACTCTGGCGGGCAG
TTGCTACTTTGATTTGCTTTGCACTGCTGCTGTTGTAGAAATTCTGAACA
CGGCCACAATGTAGCACCGCCGGATCAGTGATCACCCGCTCTGTCCGTTG
GTGACCACCGCTGTTCAGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGATGACGTTGTGTCAGATGCTCATCGCGGGCAATGG
AGTGGCGTGCTCTCCCACCCTGCTCGGCGGAAATTACCGGTGAGCTGATT
CGCAACCTCCGAAACCATTCACTTTCAAGCACAACGCGTCCCCAAGCCCT
TGTTTCCTACATGCCACCCGCGGCAGCCATGCTCATATCGCGCCTCCATG
CATAACGCGGCGATGGTAATTCAGCGTCAGATACACAAAGAAGAGCACCG
GGTTAGCCCTGCCCGTCTGCGAATTCGCAGGCCTCTTTTGTTTACCGTCG
GTTCGAAAGCGTCGAGCAAAGCGTCCTGAATACGCTTCGCCCTATGCTGA
CGCCACCACCGCCACCGCCGCCGCCGCCGCCACCGCCACCGCTATTCTTC
CTGCTTCTCGCCGTTTTTTTCTCTCGGTGCTGCCTCGCCAGGGAGGACTG
GGCGGACGAGGAGAGCGAACGAGGGAGAGGGGAAGGCCCTCTCGGCGGCG
GCAGCGGCAGCGGGAGCGGGAGCCGACGAGAAGCTTCCTCCGGAGAATCA
CCGCCGTCGCCGTCGCCCATCCAACTCGCCAACAAGAAGCGAGCTGCGCT
CTCGCGGGAGGCGGCGCTGAGAGAGCTGGTCGGGGTTGGGCACGGGGACG
GTCGTGACGGTACCGATGACGGTGGCGGCGACGGTGCTGCAAGAGGGGGG
CTGGGCGCGCACGAGCTCTTCCGGCAGGTATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6992:248..2830-

>mRNA_L-elsbetiae_contig6992.15774.1 ID=mRNA_L-elsbetiae_contig6992.15774.1|Name=mRNA_L-elsbetiae_contig6992.15774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig6992:248..2830- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGGGCGCGGTGGCGACGCGTGGGAGGGAGAGCCGAGGGTGATATA
CCACGATGTCCTCGACAGGATCGAAAGCCTGAAAACCAGCAGGAGCGACG
ACGACGACAACAACAACAACAACGGCAACGGCAACGGCAACAACCCCAGC
ACAAACAGCGAAAAACGATTCGTTACCTTCTTGTTCGACCTGCCGCCGCC
GGAGCCTTTCGGCGAGACGAGTGGCGGCGGCGGCGGCCTGCCGGTGATCT
CGATCATCGACGCCAAGGGCAAGGAGAGGCGGAAGTACTACCGCCGCCGC
GAACTCGGGCCTCTGGAGGTCGGATCCGTGATCGTCCTGAGGGACCGAAA
TCTTGGCACGCCTCTGGCGGCGTACTTCGTGGGGGAGGAGGTGGATCAGA
TGTCAGGGCGCGGTGGCGACGCGTGGGAGGGAGAGCCGAGGGTGATATAC
CACGATGTCCTCGACAGGATCGAAAGCCTGAAAACCAGCAGGAGCGACGA
CGACGACAACAACAACAACAACGGCAACGGCAACGGCAACAACCCCAGCA
CAAACAGCGAAAAACGATTCGTTACCTTCTTGTTCGACCTGCCGCCGCCG
GAGCCTTTCGGCGAGACGAGTGGCGGCGGCGGCGGCCTGCCGGTGATCTC
GATCATCGACGCCAAGGGCAAGGAGAGGCGGAAGTACTACCGCCGCCGCG
AACTCGGGCCTCTGGAGGTCGGATCCGTGATCGTCCTGAGGGACCGAAAT
CTTGGCACGCCTCTGGCGGCGTACTTCGTGGGGGAGGAGGTGGATCAGAT
GCTCATCGCGGGCAATGGAGTGGCGTGCTCTCCCACCCTGCTCGGCGGAA
ATTACCGATGCTCATCGCGGGCAATGGAGTGGCGTGCTCTCCCACCCTGC
TCGGCGGAAATTACCGGGAGGACTGGGCGGACGAGGAGAGCGAACGAGGG
AGAGGGGAAGGCCCTCTCGGCGGCGGCAGCGGCAGCGGGAGCGGGAGCCG
ACGAGAAGCTTCCTCCGGAGAATCACCGCCGTCGCCGTCGCCCATCCAAC
TCGCCAACAAGAAGCGAGCTGCGCTCTCGCGGGAGGCGGCGCTGAGAGAG
CTGGTCGGGGTTGGGCACGGGGACGGTCGTGACGGTACCGATGACGGTGG
CGGCGACGGTGCTGCAAGAGGGGGGCTGGGCGCGCACGAGCTCTTCCGGC
AGGTATAAGGAGGACTGGGCGGACGAGGAGAGCGAACGAGGGAGAGGGGA
AGGCCCTCTCGGCGGCGGCAGCGGCAGCGGGAGCGGGAGCCGACGAGAAG
CTTCCTCCGGAGAATCACCGCCGTCGCCGTCGCCCATCCAACTCGCCAAC
AAGAAGCGAGCTGCGCTCTCGCGGGAGGCGGCGCTGAGAGAGCTGGTCGG
GGTTGGGCACGGGGACGGTCGTGACGGTACCGATGACGGTGGCGGCGACG
GTGCTGCAAGAGGGGGGCTGGGCGCGCACGAGCTCTTCCGGCAGGTATAA
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