mRNA_L-elsbetiae_contig699.15772.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig699.15772.1
Unique NamemRNA_L-elsbetiae_contig699.15772.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig699.15772.1 vs. uniprot
Match: D7G490_ECTSI (Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G490_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.520e-8
Identity = 52/108 (48.15%), Postives = 64/108 (59.26%), Query Frame = 3 
Query:    3 ISRAMAPRRPLCSGDQGNSGHACPAASRPPSCWRKARRAGSS-GGR---VVTLAVGLLCSSTAPTPAFGFFLPGAAVSPSGRSAGGNSMGVGGGRAVGVSSLRSSFAG 314
            +   MA RR L +  +G S H    A R  S  R  R+ G S GGR    +++AVGLL SST+P PA  F LPGA VS S      +SMG+G G A+G+SS RSSFAG
Sbjct:    2 VLNCMASRR-LYAEKKGQSSHQDSEALRLASTGRNMRKRGRSHGGRHSLALSIAVGLLRSSTSPAPACAFLLPGA-VSRS------SSMGLGSGSAIGISSGRSSFAG 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig699.15772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G490_ECTSI6.520e-848.15Dhm exonuclease n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig699contigL-elsbetiae_contig699:21256..21569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.1e-07
Seed eggNOG ortholog2880.D7G490
Preferred nameXRN1
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000184,GO:0000287,GO:0000291,GO:0000723,GO:0000932,GO:0000956,GO:0001700,GO:0002009,GO:0002151,GO:0002165,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004534,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007049,GO:0007089,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007391,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008334,GO:0008340,GO:0008409,GO:0009056,GO:0009057,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010603,GO:0010604,GO:0010605,GO:0010607,GO:0010608,GO:0010628,GO:0010629,GO:0010639,GO:0010941,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016246,GO:0016331,GO:0016441,GO:0016458,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0022414,GO:0022613,GO:0030425,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031333,GO:0031334,GO:0032126,GO:0032200,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034248,GO:0034249,GO:0034428,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035107,GO:0035114,GO:0035120,GO:0035194,GO:0035220,GO:0035239,GO:0035295,GO:0035770,GO:0036464,GO:0036477,GO:0040008,GO:0040029,GO:0042060,GO:0042254,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043487,GO:0043488,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0045121,GO:0045202,GO:0045570,GO:0045572,GO:0045787,GO:0045893,GO:0045927,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046528,GO:0046529,GO:0046620,GO:0046622,GO:0046700,GO:0046872,GO:0048232,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051704,GO:0051726,GO:0051880,GO:0060249,GO:0060255,GO:0060260,GO:0060261,GO:0060429,GO:0060548,GO:0060562,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070034,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071044,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0090512,GO:0097159,GO:0097447,GO:0097458,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:0120025,GO:0120038,GO:0140098,GO:1900087,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902115,GO:1902116,GO:1902680,GO:1902806,GO:1902808,GO:1903311,GO:1903313,GO:1903506,GO:1903508,GO:1904356,GO:1904357,GO:1990904,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000142,GO:2000144,GO:2000278,GO:2000279,GO:2001141,GO:2001251
EggNOG free text desc.5'-3' exoribonuclease activity
EggNOG OGsCOG5049@1,KOG2045@2759
COG Functional cat.ADL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Exons1
Model size314
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.0532563-UTR-L-elsbetiae_contig699:21255..212691622816775.0532563-UTR-L-elsbetiae_contig699:21255..21269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig699 21256..21269 +
1691683803.6607788-UTR-L-elsbetiae_contig699:21255..212691691683803.6607788-UTR-L-elsbetiae_contig699:21255..21269Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig699 21256..21269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816775.0653706-CDS-L-elsbetiae_contig699:21269..215691622816775.0653706-CDS-L-elsbetiae_contig699:21269..21569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig699 21270..21569 +
1691683803.6798189-CDS-L-elsbetiae_contig699:21269..215691691683803.6798189-CDS-L-elsbetiae_contig699:21269..21569Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig699 21270..21569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig699.15772.1prot_L-elsbetiae_contig699.15772.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig699 21270..21569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig699.15772.1

>prot_L-elsbetiae_contig699.15772.1 ID=prot_L-elsbetiae_contig699.15772.1|Name=mRNA_L-elsbetiae_contig699.15772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAPRRPLCSGDQGNSGHACPAASRPPSCWRKARRAGSSGGRVVTLAVGLL
CSSTAPTPAFGFFLPGAAVSPSGRSAGGNSMGVGGGRAVGVSSLRSSFAG
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mRNA from alignment at L-elsbetiae_contig699:21256..21569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig699.15772.1 ID=mRNA_L-elsbetiae_contig699.15772.1|Name=mRNA_L-elsbetiae_contig699.15772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig699:21256..21569+ (Laminarionema elsbetiae ELsaHSoW15)
AAATCAGCCGCGCCATGGCTCCGCGTAGGCCTCTCTGTTCTGGTGACCAA
GGAAACTCTGGTCATGCTTGCCCTGCGGCCTCCCGACCACCCAGTTGTTG
GCGGAAGGCTCGTAGAGCTGGGAGCAGCGGGGGTCGTGTGGTGACACTAG
CCGTGGGATTGCTGTGCTCTTCAACTGCACCCACGCCTGCCTTTGGCTTC
TTTCTCCCTGGGGCTGCTGTCTCTCCAAGCGGAAGAAGTGCTGGCGGTAA
TAGCATGGGGGTCGGGGGTGGGCGAGCGGTTGGGGTTTCTTCTTTGCGGT
CTTCTTTCGCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig699:21256..21569+

>mRNA_L-elsbetiae_contig699.15772.1 ID=mRNA_L-elsbetiae_contig699.15772.1|Name=mRNA_L-elsbetiae_contig699.15772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig699:21256..21569+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCGCGTAGGCCTCTCTGTTCTGGTGACCAAGGAAACTCTGGTCA
TGCTTGCCCTGCGGCCTCCCGACCACCCAGTTGTTGGCGGAAGGCTCGTA
GAGCTGGGAGCAGCGGGGGTCGTGTGGTGACACTAGCCGTGGGATTGCTG
TGCTCTTCAACTGCACCCACGCCTGCCTTTGGCTTCTTTCTCCCTGGGGC
TGCTGTCTCTCCAAGCGGAAGAAGTGCTGGCGGTAATAGCATGGGGGTCG
GGGGTGGGCGAGCGGTTGGGGTTTCTTCTTTGCGGTCTTCTTTCGCTGGG
ATGGCTCCGCGTAGGCCTCTCTGTTCTGGTGACCAAGGAAACTCTGGTCA
TGCTTGCCCTGCGGCCTCCCGACCACCCAGTTGTTGGCGGAAGGCTCGTA
GAGCTGGGAGCAGCGGGGGTCGTGTGGTGACACTAGCCGTGGGATTGCTG
TGCTCTTCAACTGCACCCACGCCTGCCTTTGGCTTCTTTCTCCCTGGGGC
TGCTGTCTCTCCAAGCGGAAGAAGTGCTGGCGGTAATAGCATGGGGGTCG
GGGGTGGGCGAGCGGTTGGGGTTTCTTCTTTGCGGTCTTCTTTCGCTGGG
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