mRNA_L-elsbetiae_contig6985.15768.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6985.15768.1
Unique NamemRNA_L-elsbetiae_contig6985.15768.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6985.15768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6985contigL-elsbetiae_contig6985:9450..10037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size588
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6985.15768.1prot_L-elsbetiae_contig6985.15768.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6985 9492..9917 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.357911-UTR-L-elsbetiae_contig6985:9449..94911622816774.357911-UTR-L-elsbetiae_contig6985:9449..9491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9450..9491 +
1691683803.0820403-UTR-L-elsbetiae_contig6985:9449..94911691683803.0820403-UTR-L-elsbetiae_contig6985:9449..9491Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9450..9491 +
1622816774.378684-UTR-L-elsbetiae_contig6985:9917..100371622816774.378684-UTR-L-elsbetiae_contig6985:9917..10037Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9918..10037 +
1691683803.1049557-UTR-L-elsbetiae_contig6985:9917..100371691683803.1049557-UTR-L-elsbetiae_contig6985:9917..10037Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6985 9918..10037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.3681538-CDS-L-elsbetiae_contig6985:9491..99171622816774.3681538-CDS-L-elsbetiae_contig6985:9491..9917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 9492..9917 +
1691683803.0939038-CDS-L-elsbetiae_contig6985:9491..99171691683803.0939038-CDS-L-elsbetiae_contig6985:9491..9917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6985 9492..9917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6985.15768.1

>prot_L-elsbetiae_contig6985.15768.1 ID=prot_L-elsbetiae_contig6985.15768.1|Name=mRNA_L-elsbetiae_contig6985.15768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MLGKAQTLTMMHLRGVIAYMCGQAAHRAVRPCVWRLCVSRVSKEKPRVLQ
RLVVGIRDLGLFGVEQLEKDRSQRRPPLFGDRRIHTSVQEERSVQRGAVP
IPLVDRGSRLSTTHAMSLGSIIWYMAGLEQPTKDRREAELF*
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mRNA from alignment at L-elsbetiae_contig6985:9450..10037+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6985.15768.1 ID=mRNA_L-elsbetiae_contig6985.15768.1|Name=mRNA_L-elsbetiae_contig6985.15768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig6985:9450..10037+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAAGCGAGCAGAAAAACAATCTGTTTTTGTTGTTGTTGGATGTTAGG
GAAAGCACAAACGCTTACCATGATGCATTTGCGTGGCGTGATTGCCTACA
TGTGCGGGCAGGCTGCGCACAGAGCGGTGCGGCCGTGTGTCTGGAGACTT
TGTGTGTCGCGTGTCAGCAAAGAAAAACCGAGAGTTTTGCAGAGGTTGGT
TGTCGGAATTCGGGACTTGGGGCTCTTCGGCGTTGAACAACTCGAAAAAG
ATCGATCGCAGCGTCGGCCTCCCCTTTTCGGGGACCGTCGTATACATACA
TCTGTACAAGAAGAGCGATCCGTTCAAAGGGGCGCGGTGCCTATTCCTCT
TGTCGACCGGGGCTCCCGACTCTCGACGACGCATGCGATGTCTTTGGGGT
CGATTATTTGGTACATGGCCGGACTGGAACAGCCGACAAAGGACAGGCGA
GAGGCGGAACTCTTCTGAGCTTCTTTTGCACGCGAAAGCCCCACGCGCTT
GATGGTCCAGTCGCTTCCTTCTGTTCTGCCACATGGTACGCACAAATATA
TGTACGAGCCAACCGTCCAGGAGGACGGAAACACCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6985:9450..10037+

>mRNA_L-elsbetiae_contig6985.15768.1 ID=mRNA_L-elsbetiae_contig6985.15768.1|Name=mRNA_L-elsbetiae_contig6985.15768.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig6985:9450..10037+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTAGGGAAAGCACAAACGCTTACCATGATGCATTTGCGTGGCGTGAT
TGCCTACATGTGCGGGCAGGCTGCGCACAGAGCGGTGCGGCCGTGTGTCT
GGAGACTTTGTGTGTCGCGTGTCAGCAAAGAAAAACCGAGAGTTTTGCAG
AGGTTGGTTGTCGGAATTCGGGACTTGGGGCTCTTCGGCGTTGAACAACT
CGAAAAAGATCGATCGCAGCGTCGGCCTCCCCTTTTCGGGGACCGTCGTA
TACATACATCTGTACAAGAAGAGCGATCCGTTCAAAGGGGCGCGGTGCCT
ATTCCTCTTGTCGACCGGGGCTCCCGACTCTCGACGACGCATGCGATGTC
TTTGGGGTCGATTATTTGGTACATGGCCGGACTGGAACAGCCGACAAAGG
ACAGGCGAGAGGCGGAACTCTTCTGAATGTTAGGGAAAGCACAAACGCTT
ACCATGATGCATTTGCGTGGCGTGATTGCCTACATGTGCGGGCAGGCTGC
GCACAGAGCGGTGCGGCCGTGTGTCTGGAGACTTTGTGTGTCGCGTGTCA
GCAAAGAAAAACCGAGAGTTTTGCAGAGGTTGGTTGTCGGAATTCGGGAC
TTGGGGCTCTTCGGCGTTGAACAACTCGAAAAAGATCGATCGCAGCGTCG
GCCTCCCCTTTTCGGGGACCGTCGTATACATACATCTGTACAAGAAGAGC
GATCCGTTCAAAGGGGCGCGGTGCCTATTCCTCTTGTCGACCGGGGCTCC
CGACTCTCGACGACGCATGCGATGTCTTTGGGGTCGATTATTTGGTACAT
GGCCGGACTGGAACAGCCGACAAAGGACAGGCGAGAGGCGGAACTCTTCT
GA
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