mRNA_L-elsbetiae_contig6982.15764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6982.15764.1
Unique NamemRNA_L-elsbetiae_contig6982.15764.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6982.15764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6982contigL-elsbetiae_contig6982:6864..7596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size733
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6982.15764.1prot_L-elsbetiae_contig6982.15764.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6982 7006..7416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.9953625-UTR-L-elsbetiae_contig6982:6863..70051622816773.9953625-UTR-L-elsbetiae_contig6982:6863..7005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6982 6864..7005 +
1691683802.8184462-UTR-L-elsbetiae_contig6982:6863..70051691683802.8184462-UTR-L-elsbetiae_contig6982:6863..7005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6982 6864..7005 +
1622816774.018092-UTR-L-elsbetiae_contig6982:7416..75961622816774.018092-UTR-L-elsbetiae_contig6982:7416..7596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6982 7417..7596 +
1691683802.8357024-UTR-L-elsbetiae_contig6982:7416..75961691683802.8357024-UTR-L-elsbetiae_contig6982:7416..7596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6982 7417..7596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.0057287-CDS-L-elsbetiae_contig6982:7005..74161622816774.0057287-CDS-L-elsbetiae_contig6982:7005..7416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6982 7006..7416 +
1691683802.8274212-CDS-L-elsbetiae_contig6982:7005..74161691683802.8274212-CDS-L-elsbetiae_contig6982:7005..7416Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6982 7006..7416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6982.15764.1

>prot_L-elsbetiae_contig6982.15764.1 ID=prot_L-elsbetiae_contig6982.15764.1|Name=mRNA_L-elsbetiae_contig6982.15764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=137bp
MGYRLLANESCVRCNSEVSMNTSASISASAIVALVAGAACPLSPSHVGKI
SLYMQLAPSRGLLARGRRGSNASGREGGRDYCCMFCSHLTCDVEGFSGHL
FISSPSCRDTLILDQTFKNGSFSAIDSLGQLMCHGS*
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mRNA from alignment at L-elsbetiae_contig6982:6864..7596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6982.15764.1 ID=mRNA_L-elsbetiae_contig6982.15764.1|Name=mRNA_L-elsbetiae_contig6982.15764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=733bp|location=Sequence derived from alignment at L-elsbetiae_contig6982:6864..7596+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGTCTAGATGCTCTCAGTCTTTCTTCTCTCGGCGAACGCTTCAACGGG
GTGATATATTTCTAGATTTTTGGCCTATGAGGTAGAATTCTATCTCATGA
TGAATCCGCCGCGGGGATCTGGCATGGAGAGAGGAGTTCCCGATGGGCTA
CAGGCTGCTGGCAAACGAGAGTTGCGTGCGATGCAATAGCGAGGTCAGCA
TGAATACAAGCGCGTCGATTTCTGCTAGTGCCATTGTAGCGTTGGTTGCG
GGAGCGGCGTGCCCTCTGTCACCAAGTCATGTGGGGAAGATATCTCTATA
CATGCAGCTTGCTCCATCACGTGGATTACTTGCGAGAGGGAGACGCGGTT
CCAACGCTAGTGGGAGAGAAGGTGGGCGAGATTATTGCTGTATGTTTTGC
TCACATCTCACATGTGATGTTGAAGGGTTTTCTGGTCATTTATTTATTTC
GTCACCAAGCTGTCGTGACACCTTGATCCTTGATCAGACCTTTAAAAACG
GCTCTTTTTCCGCAATAGATAGTCTAGGGCAGCTCATGTGCCACGGTAGC
TAGAAGTGAAAATATCCCAACAAGTTACAAGGTTAAGTCTGAACAACAAG
AGGTCCTCATGGTCCAAACCTCATCCTCAAACGTTAGCTAGAACTGATGT
TTGGGTTGTCGAGATGCAACGACACCACCGCGTTGGCATCATTTTTTCGA
AAACAGCAGCCGTGCACAGAACAGAGAGCCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6982:6864..7596+

>mRNA_L-elsbetiae_contig6982.15764.1 ID=mRNA_L-elsbetiae_contig6982.15764.1|Name=mRNA_L-elsbetiae_contig6982.15764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig6982:6864..7596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTACAGGCTGCTGGCAAACGAGAGTTGCGTGCGATGCAATAGCGA
GGTCAGCATGAATACAAGCGCGTCGATTTCTGCTAGTGCCATTGTAGCGT
TGGTTGCGGGAGCGGCGTGCCCTCTGTCACCAAGTCATGTGGGGAAGATA
TCTCTATACATGCAGCTTGCTCCATCACGTGGATTACTTGCGAGAGGGAG
ACGCGGTTCCAACGCTAGTGGGAGAGAAGGTGGGCGAGATTATTGCTGTA
TGTTTTGCTCACATCTCACATGTGATGTTGAAGGGTTTTCTGGTCATTTA
TTTATTTCGTCACCAAGCTGTCGTGACACCTTGATCCTTGATCAGACCTT
TAAAAACGGCTCTTTTTCCGCAATAGATAGTCTAGGGCAGCTCATGTGCC
ACGGTAGCTAGATGGGCTACAGGCTGCTGGCAAACGAGAGTTGCGTGCGA
TGCAATAGCGAGGTCAGCATGAATACAAGCGCGTCGATTTCTGCTAGTGC
CATTGTAGCGTTGGTTGCGGGAGCGGCGTGCCCTCTGTCACCAAGTCATG
TGGGGAAGATATCTCTATACATGCAGCTTGCTCCATCACGTGGATTACTT
GCGAGAGGGAGACGCGGTTCCAACGCTAGTGGGAGAGAAGGTGGGCGAGA
TTATTGCTGTATGTTTTGCTCACATCTCACATGTGATGTTGAAGGGTTTT
CTGGTCATTTATTTATTTCGTCACCAAGCTGTCGTGACACCTTGATCCTT
GATCAGACCTTTAAAAACGGCTCTTTTTCCGCAATAGATAGTCTAGGGCA
GCTCATGTGCCACGGTAGCTAG
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