mRNA_L-elsbetiae_contig698.15757.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig698.15757.1
Unique NamemRNA_L-elsbetiae_contig698.15757.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig698.15757.1 vs. uniprot
Match: D8LJ14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ14_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 9.640e-72
Identity = 120/165 (72.73%), Postives = 134/165 (81.21%), Query Frame = 3 
Query:  579 MTIYGIGGVSGTGKTHFRTTCESLRGARALDIADVYEESVAAGRPDLHWKTALERFEARVRGRLEEDRSGDIVLEAFFRPDGAQRQVIEDLAQEFGVYVRWGWASARRADCLSRVSNEQAGRDSSERKEKRLSFIRSAEPWFFHERPTESLQLMANLVRAPAHQT 1073
            MTIYGIGGVSGTGKTHFRT+CE  R  R LDIADVYEES+A G PD+HW+TAL+ F+ RVRG LEEDRS DIVLEAFFRPDGAQRQ IE +A+ FGV V WGWA A RADCLSRVSNE+ G DSSER++KRLSFI++AE  FF ERP ESL  +A   RAP  QT
Sbjct:    1 MTIYGIGGVSGTGKTHFRTSCEGFRDVRVLDIADVYEESLAQGHPDMHWRTALQVFQGRVRGWLEEDRSSDIVLEAFFRPDGAQRQAIEAIARGFGVDVIWGWAWAPRADCLSRVSNERGGHDSSERRQKRLSFIKTAESSFFRERPEESLASLA--TRAPTRQT 163
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BLAST of mRNA_L-elsbetiae_contig698.15757.1 vs. uniprot
Match: A0A835SZY1_CHLIN (RING-type domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SZY1_CHLIN)

HSP 1 Score: 64.7 bits (156), Expect = 1.090e-8
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 3 
Query:  792 IVLEAFFRPDGAQRQVIEDLAQEFGVYVRWGWASARRADCLSRV-SNEQAGRDSSERKEKRLSFIRSAEPWFFHERPTE 1025
            IV EAFF P   QR+ IE LAQE+   V + W +A RA+CL RV ++  AGRDS ER + R+SFI+     +F ER  E
Sbjct:   16 IVCEAFFAPGKLQRRGIETLAQEYDFDVCYIWCAASRAECLRRVIADYNAGRDSWERYQARVSFIQEIPEKYFWERDDE 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig698.15757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ14_ECTSI9.640e-7272.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835SZY1_CHLIN1.090e-849.37RING-type domain-containing protein n=1 Tax=Chlamy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig698contigL-elsbetiae_contig698:2772..4744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_002290.1
Exons2
Model size1725
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig698.15757.1prot_L-elsbetiae_contig698.15757.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig698 3206..4110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.347273-UTR-L-elsbetiae_contig698:2771..32051622816773.347273-UTR-L-elsbetiae_contig698:2771..3205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig698 2772..3205 +
1691683802.3459969-UTR-L-elsbetiae_contig698:2771..32051691683802.3459969-UTR-L-elsbetiae_contig698:2771..3205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig698 2772..3205 +
1622816773.3855226-UTR-L-elsbetiae_contig698:4110..47441622816773.3855226-UTR-L-elsbetiae_contig698:4110..4744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig698 4111..4744 +
1691683802.3745365-UTR-L-elsbetiae_contig698:4110..47441691683802.3745365-UTR-L-elsbetiae_contig698:4110..4744Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig698 4111..4744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.3595915-CDS-L-elsbetiae_contig698:3205..36481622816773.3595915-CDS-L-elsbetiae_contig698:3205..3648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig698 3206..3648 +
1691683802.3549767-CDS-L-elsbetiae_contig698:3205..36481691683802.3549767-CDS-L-elsbetiae_contig698:3205..3648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig698 3206..3648 +
1622816773.3717268-CDS-L-elsbetiae_contig698:3896..41101622816773.3717268-CDS-L-elsbetiae_contig698:3896..4110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig698 3897..4110 +
1691683802.3658407-CDS-L-elsbetiae_contig698:3896..41101691683802.3658407-CDS-L-elsbetiae_contig698:3896..4110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig698 3897..4110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig698.15757.1

>prot_L-elsbetiae_contig698.15757.1 ID=prot_L-elsbetiae_contig698.15757.1|Name=mRNA_L-elsbetiae_contig698.15757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MLVGEEYSSNFHSPRYAQRHVCLLPKTPQQRHINRPSTTPNAIPPTDPMT
IYGIGGVSGTGKTHFRTTCESLRGARALDIADVYEESVAAGRPDLHWKTA
LERFEARVRGRLEEDRSGDIVLEAFFRPDGAQRQVIEDLAQEFGVYVRWG
WASARRADCLSRVSNEQAGRDSSERKEKRLSFIRSAEPWFFHERPTESLQ
LMANLVRAPAHQTNLQFR*
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mRNA from alignment at L-elsbetiae_contig698:2772..4744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig698.15757.1 ID=mRNA_L-elsbetiae_contig698.15757.1|Name=mRNA_L-elsbetiae_contig698.15757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1973bp|location=Sequence derived from alignment at L-elsbetiae_contig698:2772..4744+ (Laminarionema elsbetiae ELsaHSoW15)
GGATGGCTCGAGGTTCACAGGCGTTTACTATTTTCTCTCGCAGCGTTGGG
GCGGCAAGCAAGGCGGGGAGCAGGCAAAGTGAGCAACACAGACAAAACAA
TATGTACGGTTGCAACATAATTTCTCAACCCTCAAGATAAAAAACACTTT
TTACTTGACAGCAGCGCACGTCTCTTGAGGTGTGGGTCCCATACGTATCG
CTATTACATATCTAATGCTTCATATCCGGCGGGCGTATCCTAACTCTTTA
GTACCATACCAGAGCGCCATACTTTCGTAAATATAAACCTATGACCTCGG
ATAAGGGATAGACAGGTGCGCACACGGAGCCGCCTCACAGAGTGACAGCC
TGCAGCCAATGATGGTGTTCGCTCCGAAACAGCCGTCGCAGGGTTTTCAC
CTACATATATGAAGCTCTAACAACCTGCTTGTAAATGCTGGTCGGTGAAG
AGTATTCCTCCAACTTCCACTCGCCCCGCTATGCCCAACGCCACGTTTGT
CTCCTCCCAAAAACACCGCAGCAGCGACATATAAACAGACCATCAACAAC
CCCGAACGCCATCCCTCCGACCGATCCGATGACGATCTATGGAATCGGGG
GAGTCTCCGGGACGGGCAAGACGCACTTCCGCACCACCTGCGAGAGTCTC
AGAGGAGCTCGCGCGTTGGACATCGCAGATGTCTACGAAGAGTCCGTCGC
GGCGGGTCGTCCGGATCTCCACTGGAAGACGGCTCTCGAGCGCTTCGAGG
CAAGGGTGCGGGGGCGGCTGGAAGAGGACAGATCGGGGGACATCGTGCTA
GAGGCGTTTTTCAGGCCCGACGGGGCGCAGCGGCAGGTGATCGAGGACCT
GGCGCAAGAGTTCGGAGTCTACGTAAGGTGAGAACCCGATGTGGTATTTT
TTGTAGGGTGGCGCAGGCTGGAGCTGCGTTTCTCTTCGGGTATTTTGTGT
CGGTGCCTCATCAACGGCGGGGTTGGTTGCACGTACGCGGGGGTGCCAAT
GCAAGTGCAGCGGTGCCGACCCGCAAGGCGGATCGTTAGATACACAAACT
ATGTATGAGTTTTACCCACCGCCGTGACCAACATCCACAGCTGCCTCTGT
CGGGGGGGGGGTACTACATATGCAGGTGGGGCTGGGCGTCGGCACGACGC
GCGGACTGTCTCTCCAGGGTTTCGAACGAACAAGCTGGCCGGGACTCGTC
GGAAAGAAAAGAAAAACGCCTCAGCTTCATCAGATCCGCAGAGCCCTGGT
TTTTCCACGAGAGACCGACGGAAAGCTTGCAACTCATGGCGAATCTGGTC
CGAGCACCGGCCCATCAAACAAATTTACAATTCAGATAACTAAATAAGTG
GGTTGGTTGCCAACCCGTGTAGGCCATGGGGAAAAGGTGTCTGTTTGCGG
AGAAGTGTGATCTTGGTCAGACCGCTCGTTAAGAATGTGTTTAGCGCGTC
GTTTCGGGTGTTTTAAGTCGGGTTGGAAAAACAAAAAAAGGCCCAAAACC
GAGGAAAATAGCCCCTTTTAGAGGAATGCCTGTCGCCAACCTGGTAGATT
CGTTTTCGCAGGGCCGTGACACGTCCCGTAAGCTCGTCACCACTGAAAAA
ATGTACCGGGCAGTCAGAAACCATATTGTTGTTTAGAGTGTCATTATCGC
TGTTAGGCACCACAAGGGGAAACATGCTTCTCCTGTCTGCGCGCACGCCC
AAATTGCGTCCAACAAATTAGTGGCGTAGGTTGACGCTTTTCGGTTTCTG
TTTTTGCTGCCGGTCGAATTCTCGGTGGTTTGTTGGTCGCGAAGCTAAAA
ACTAAAACTAAGGAAGCAGCCCAGGGTATCCTACAAACCCTAGGCCATCG
CCGGGAGCTATGGCGTGCTACGGTTGCTGTGTTACATGTAGTCTACCCCC
CTCCGAGCGAAGGAAGCGTTTTTTATAGTGTGTTGCTCCGCACACGTCTG
ACTAAATAGGAACAATCGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig698:2772..4744+

>mRNA_L-elsbetiae_contig698.15757.1 ID=mRNA_L-elsbetiae_contig698.15757.1|Name=mRNA_L-elsbetiae_contig698.15757.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig698:2772..4744+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGTCGGTGAAGAGTATTCCTCCAACTTCCACTCGCCCCGCTATGC
CCAACGCCACGTTTGTCTCCTCCCAAAAACACCGCAGCAGCGACATATAA
ACAGACCATCAACAACCCCGAACGCCATCCCTCCGACCGATCCGATGACG
ATCTATGGAATCGGGGGAGTCTCCGGGACGGGCAAGACGCACTTCCGCAC
CACCTGCGAGAGTCTCAGAGGAGCTCGCGCGTTGGACATCGCAGATGTCT
ACGAAGAGTCCGTCGCGGCGGGTCGTCCGGATCTCCACTGGAAGACGGCT
CTCGAGCGCTTCGAGGCAAGGGTGCGGGGGCGGCTGGAAGAGGACAGATC
GGGGGACATCGTGCTAGAGGCGTTTTTCAGGCCCGACGGGGCGCAGCGGC
AGGTGATCGAGGACCTGGCGCAAGAGTTCGGAGTCTACGTAAGATGCTGG
TCGGTGAAGAGTATTCCTCCAACTTCCACTCGCCCCGCTATGCCCAACGC
CACGTTTGTCTCCTCCCAAAAACACCGCAGCAGCGACATATAAACAGACC
ATCAACAACCCCGAACGCCATCCCTCCGACCGATCCGATGACGATCTATG
GAATCGGGGGAGTCTCCGGGACGGGCAAGACGCACTTCCGCACCACCTGC
GAGAGTCTCAGAGGAGCTCGCGCGTTGGACATCGCAGATGTCTACGAAGA
GTCCGTCGCGGCGGGTCGTCCGGATCTCCACTGGAAGACGGCTCTCGAGC
GCTTCGAGGCAAGGGTGCGGGGGCGGCTGGAAGAGGACAGATCGGGGGAC
ATCGTGCTAGAGGCGTTTTTCAGGCCCGACGGGGCGCAGCGGCAGGTGAT
CGAGGACCTGGCGCAAGAGTTCGGAGTCTACGTAAGGTGGGGCTGGGCGT
CGGCACGACGCGCGGACTGTCTCTCCAGGGTTTCGAACGAACAAGCTGGC
CGGGACTCGTCGGAAAGAAAAGAAAAACGCCTCAGCTTCATCAGATCCGC
AGAGCCCTGGTTTTTCCACGAGAGACCGACGGAAAGCTTGCAACTCATGG
CGAATCTGGTCCGAGCACCGGCCCATCAAACAAATTTACAATTCAGATAA
GTGGGGCTGGGCGTCGGCACGACGCGCGGACTGTCTCTCCAGGGTTTCGA
ACGAACAAGCTGGCCGGGACTCGTCGGAAAGAAAAGAAAAACGCCTCAGC
TTCATCAGATCCGCAGAGCCCTGGTTTTTCCACGAGAGACCGACGGAAAG
CTTGCAACTCATGGCGAATCTGGTCCGAGCACCGGCCCATCAAACAAATT
TACAATTCAGATAA
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