mRNA_L-elsbetiae_contig6976.15753.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6976.15753.1
Unique NamemRNA_L-elsbetiae_contig6976.15753.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6976.15753.1 vs. uniprot
Match: D7G593_ECTSI (Dual-specificity tyrosine-phosphorylation regulated kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G593_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.470e-23
Identity = 92/176 (52.27%), Postives = 101/176 (57.39%), Query Frame = 3 
Query:    3 HGRSGGEVARGLRSFISST--PSKAARRGRTRNHRRR----EDQALVDPCTPVEVTQPGVVAGF-RRT*RDYCHSRVRAKASRDSRCRL--APPETT*WGWGWKTVHGAGGRRWKAGGLEIRRCSRRCSSSSSTCRHLRGPWEVGVRGAGTTGL-RGAQISWGCSTRATLLLRPRL 500
            HGR G   ARG RSFI ST   S+ ARR R RNH RR    ED+A V P    EVT   V A +  RT   Y  +  RAKA+ + RCRL      +  W   WK V G    R   GGL  R  SRRCSSSSSTCR L   W VGVRGAGT  + + AQI WG STRATLLL PRL
Sbjct: 1248 HGRFGEGAARGRRSFILSTLFSSRGARRDRLRNHPRRCPLPEDRAPVGPYILREVTPRAVGAEWLSRTSWAYRSTHSRAKAT-NHRCRLDLLAAISPAWVSEWKAVLGGEAGRSGVGGLGPRCYSRRCSSSSSTCRPLHDRWGVGVRGAGTIEVPQEAQILWGASTRATLLLMPRL 1422
[Close]
BLAST of mRNA_L-elsbetiae_contig6976.15753.1 vs. uniprot
Match: A0A6H5K1S7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.370e-9
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:  374 HVPTPPRPMGGRSAGSWDDR-APGGPDIMGVLHEGNPSPEA 493
            H+PTPPR MGGR AGSWDDR A GGPDIMG +HEGNPSP+A
Sbjct: 1350 HLPTPPRSMGGRGAGSWDDRGAAGGPDIMGSIHEGNPSPDA 1390
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6976.15753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G593_ECTSI2.470e-2352.27Dual-specificity tyrosine-phosphorylation regulate... [more]
A0A6H5K1S7_9PHAE2.370e-980.49Protein kinase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6976contigL-elsbetiae_contig6976:1561..3105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDual-specificity tyrosine-phosphorylation regulated kinase
Ec32 orthologEc-14_006680.1
Exons1
Model size1545
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6976.15753.1prot_L-elsbetiae_contig6976.15753.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6976 1691..2056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.0186713-UTR-L-elsbetiae_contig6976:1560..16901622816773.0186713-UTR-L-elsbetiae_contig6976:1560..1690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6976 1561..1690 +
1691683802.1220803-UTR-L-elsbetiae_contig6976:1560..16901691683802.1220803-UTR-L-elsbetiae_contig6976:1560..1690Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6976 1561..1690 +
1622816773.0457594-UTR-L-elsbetiae_contig6976:2056..31051622816773.0457594-UTR-L-elsbetiae_contig6976:2056..3105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6976 2057..3105 +
1691683802.1396077-UTR-L-elsbetiae_contig6976:2056..31051691683802.1396077-UTR-L-elsbetiae_contig6976:2056..3105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6976 2057..3105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816773.0329099-CDS-L-elsbetiae_contig6976:1690..20561622816773.0329099-CDS-L-elsbetiae_contig6976:1690..2056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6976 1691..2056 +
1691683802.1315877-CDS-L-elsbetiae_contig6976:1690..20561691683802.1315877-CDS-L-elsbetiae_contig6976:1690..2056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6976 1691..2056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6976.15753.1

>prot_L-elsbetiae_contig6976.15753.1 ID=prot_L-elsbetiae_contig6976.15753.1|Name=mRNA_L-elsbetiae_contig6976.15753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MYPGRGHPTGGSGGLPSNIAGLLSQQGPSQGQQGQPMPPRPPRNDMMGVG
MENGSWGRGAEVESWGSRNSSLQQAMQQQQQHVPTPPRPMGGRSAGSWDD
RAPGGPDIMGVLHEGNPSPEA*
back to top

mRNA from alignment at L-elsbetiae_contig6976:1561..3105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6976.15753.1 ID=mRNA_L-elsbetiae_contig6976.15753.1|Name=mRNA_L-elsbetiae_contig6976.15753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1545bp|location=Sequence derived from alignment at L-elsbetiae_contig6976:1561..3105+ (Laminarionema elsbetiae ELsaHSoW15)
CACACGGGCGCTCCGGAGGAGAGGTAGCTCGGGGTCTTCGGAGTTTTATT
TCGTCGACACCCAGCAAAGCGGCACGCCGGGGTCGTACACGCAACCACCG
CCGGCGGGAGGACCAAGCTCTGGTCGATCCATGTACCCCGGTCGAGGTCA
CCCAACCGGGGGTAGTGGCGGGCTTCCGTCGAACATAGCGGGACTACTGT
CACAGCAGGGTCCGAGCCAAGGCCAGCAGGGACAGCCGATGCCGCCTCGC
CCCCCCCGAAACGACATGATGGGGGTGGGGATGGAAAACGGTTCATGGGG
CAGGGGGGCGGAGGTGGAAAGCTGGGGGTCTCGAAATTCGTCGCTGCAGC
AGGCGATGCAGCAGCAGCAGCAGCACGTGCCGACACCTCCGCGGCCCATG
GGAGGTAGGAGTGCGGGGAGCTGGGACGACAGGGCTCCGGGGGGCCCAGA
TATCATGGGGGTGCTCCACGAGGGCAACCCTTCTCCTGAGGCCTAGGTTA
GACCAGAGGGGTCTAAAATTATATACGTGAATACATATTATAGCCGTGGA
ATGTTTTGGCATGTTTTGTTGATCTTGCTGGGCTCGAGAGGAGACTCTCT
CTTGCCCCAGGAGCTCGTGGCGCATAGTCTTTTCGTGGGTTTGCCAAGCG
ATGCCACTCGTGGAAGGGCAGGTATTGACATGCAGCCGTGTTGTGTGGTC
CAAAGACGAATAATTCAGTGGGCGAAGCCGAAGGCGTGCACGGCAGCAGC
GGCAGCCGCCGTTCGATGTGTAGTGCAAAACGTGACCAAGCGGCCCTAGT
GCGGCGGGCTGTGTTCACACCCATCCGCCGCCCGCCCTTTTGCTTGGTCG
CGTGCGGCGGTTGTCTCGTCCTCGTAGTGTTGAGTGGTGGTCTTACTTGG
AACTCTGTGAGCCGCCTCGTTGGTCGTCCGAGCTTTGGTTGTGTTCAGAC
GTGTTTTGATGCTGCTCTTTTTACGATTGAGTGTTGGCTTGGTTGACGCC
TGGAGGGCATCGCTTCTTTAAGTTCGGGTGGTAATGCACATGCGCACCCG
TCGGAGTATTCCTTGTCTCATTTGATCCCTCGGTTTTTTTGTTGCGCCTT
TATTCTTGTTCCGCCCCGGGTCCTTTGGATTTGCTGTTACTGCCCAGTTT
GTGGCCGTCCCGATGCAGTGTGTTTTCGTATTGTAAAACGTGCCACATCC
ATTTCAAGTGGTTTTAAGCCACCGGTCGGGTGGGCAGCAATAAGGATGCA
TGTTTTTGCCCCTGTGAAGAGATGTGGGCTTATTATTGGGGCAGGTTTTT
AAGGGTACACGGCGATGTACGAGGCGGAGGAAAATAGATGGGCCGGAAGG
GAAAGTAGGTTTTGGGGCCGTGGCGTTGCATCCCTATTCAGCGGGCGCAG
GTTTAGTTGCTCTTCGGCAGCACGGGCACGTGTTTGGCAAGGCGACCCCG
TCGAGTGTAGCGCGCGCGTGTTTTGCTTTGTCCGTAAATCGATGCCAGAA
ATCGACCGAGTGGTGTCTAGATGAAAACATGATGGCAGTCGACAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6976:1561..3105+

>mRNA_L-elsbetiae_contig6976.15753.1 ID=mRNA_L-elsbetiae_contig6976.15753.1|Name=mRNA_L-elsbetiae_contig6976.15753.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig6976:1561..3105+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCCCGGTCGAGGTCACCCAACCGGGGGTAGTGGCGGGCTTCCGTC
GAACATAGCGGGACTACTGTCACAGCAGGGTCCGAGCCAAGGCCAGCAGG
GACAGCCGATGCCGCCTCGCCCCCCCCGAAACGACATGATGGGGGTGGGG
ATGGAAAACGGTTCATGGGGCAGGGGGGCGGAGGTGGAAAGCTGGGGGTC
TCGAAATTCGTCGCTGCAGCAGGCGATGCAGCAGCAGCAGCAGCACGTGC
CGACACCTCCGCGGCCCATGGGAGGTAGGAGTGCGGGGAGCTGGGACGAC
AGGGCTCCGGGGGGCCCAGATATCATGGGGGTGCTCCACGAGGGCAACCC
TTCTCCTGAGGCCTAGATGTACCCCGGTCGAGGTCACCCAACCGGGGGTA
GTGGCGGGCTTCCGTCGAACATAGCGGGACTACTGTCACAGCAGGGTCCG
AGCCAAGGCCAGCAGGGACAGCCGATGCCGCCTCGCCCCCCCCGAAACGA
CATGATGGGGGTGGGGATGGAAAACGGTTCATGGGGCAGGGGGGCGGAGG
TGGAAAGCTGGGGGTCTCGAAATTCGTCGCTGCAGCAGGCGATGCAGCAG
CAGCAGCAGCACGTGCCGACACCTCCGCGGCCCATGGGAGGTAGGAGTGC
GGGGAGCTGGGACGACAGGGCTCCGGGGGGCCCAGATATCATGGGGGTGC
TCCACGAGGGCAACCCTTCTCCTGAGGCCTAG
back to top