mRNA_L-elsbetiae_contig6962.15736.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6962.15736.1
Unique NamemRNA_L-elsbetiae_contig6962.15736.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.850e-35
Identity = 65/102 (63.73%), Postives = 75/102 (73.53%), Query Frame = 2 
Query:   86 RCLAAFATALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARLKTGDGAAGSRRLPAFRPRRVTWNLPPSALNGEEDPVFSDVKVLILGH 391
            RCL A   ALT  G G+ WYT T QLQLAS D C ACRA PT+HL VDG +PARLK G    G+ R+PAFRPR VTWN P +AL GE+D VF+DV+VL+LGH
Sbjct:   84 RCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARLKAGIDNGGASRVPAFRPRCVTWNKPIAALRGEDD-VFADVRVLVLGH 184
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.470e-16
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 2 
Query:  110 ALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARL-----------------KTGDGAAGSRRLPAFRPRRVTWNLPPSALNGEEDPVFSDVKVL 379
            AL E  GG++WY ST QLQLAS + CVACR+  TLHL V+ G P  L                     G +   R+P FRPR VTWNLPPS L+      F +++ +
Sbjct:    3 ALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECM 109
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.800e-13
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 2 
Query:   89 CLAAFATALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARLKTGDGAAGSR-------RLPAFRPRRVTWNLPPSALNGEEDPVFSDVKV 376
            CL     AL E   G+ WYTST +LQLAS +LC+ACR   TLHL VD   P RL     A           R+P  R RR TWN+P ++  G    +F+ + V
Sbjct:  136 CLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTAS--GMRTSIFATMDV 236
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.510e-13
Identity = 43/89 (48.31%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:   89 CLAAFATALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARL-KTGDGAA------GSRRLPAFRPRRVTWNLPPSA 334
            CL A   AL E   G+ WYTST +LQLAS + C+ACRA  TLHL VD  +P  L    DG          RR+P  R R VTWN+P +A
Sbjct:   36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAA 124
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.620e-12
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 2 
Query:  110 ALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARLKTGDGAAGSR---------RLPAFRPRRVTWNLPPSALNGEEDPVFSDVKVLILG 388
            AL +  G   WYTS  QLQLAS  LC+ACR  PT HL V+  + A L     A  +R         R+PA RPR+VTWNL   ++    D  F  V VL+ G
Sbjct:   22 ALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMRHCGD-AFESVDVLVFG 122
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.300e-12
Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = 2 
Query:   65 QARSGA-GRCLAAFATALTECGGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARLKTGDGAAGSR----------------RLPAFRPRRVTWNLPPSALNGEEDPVFSDVKVLI 382
            QA SG   +CL AF  AL     G +WY ST QLQLAS DLC ACR  PTL L+V+   P  L   + A G R                R+P F PRRV W L    L      ++++V+ L+
Sbjct:    3 QAESGGDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWA-EAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLL 124
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.760e-8
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 2 
Query:  125 GGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARL-----KTGDGAAGSRRLPAFRPRRVTWNL 322
            GG + W+ ST +LQLAS  LC ACR A  LHL V+   P RL        DG+    R+P  R R V+W+L
Sbjct:   44 GGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEEGTRVPRLRAREVSWDL 114
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: A0A6H5JR57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR57_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 6.260e-6
Identity = 31/71 (43.66%), Postives = 38/71 (53.52%), Query Frame = 2 
Query:  125 GGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARLKT-----GDGAAGSRRLPAFRPRRVTWNL 322
            G    W+TST  LQLAS DLC ACR+ PTL + +D   P  L T     G  +A S R+P  R   V W +
Sbjct:   36 GDNIRWFTSTLNLQLASVDLCRACRSVPTLLVKIDHDTPRSLWTPTVYAGAYSAPSGRVPPLRAHGVRWEI 106
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BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 2.170e-5
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 2 
Query:  125 GGGREWYTSTAQLQLASYDLCVACRAAPTLHLAVDGGMPARL-----KTGDGAAGSRRLPAFRPR 304
            GG + W+ ST +LQLAS  LC ACR A  LHL VD   P RL        D +    R+P  R R
Sbjct:   44 GGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPADSPSDDSEEDTRVPRLRAR 108
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6962.15736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LCS9_ECTSI4.850e-3563.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG83_9PHAE8.470e-1642.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE1.800e-1341.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE2.510e-1348.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMU8_9PHAE2.620e-1243.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G241_ECTSI4.300e-1239.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0U4_9PHAE1.760e-845.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR57_9PHAE6.260e-643.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL9_ECTSI2.170e-544.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6962contigL-elsbetiae_contig6962:6907..8170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size394
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.369518-CDS-L-elsbetiae_contig6962:6906..72221622816771.369518-CDS-L-elsbetiae_contig6962:6906..7222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6962 6907..7222 -
1691683800.9800532-CDS-L-elsbetiae_contig6962:6906..72221691683800.9800532-CDS-L-elsbetiae_contig6962:6906..7222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6962 6907..7222 -
1622816771.3795726-CDS-L-elsbetiae_contig6962:8093..81701622816771.3795726-CDS-L-elsbetiae_contig6962:8093..8170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6962 8094..8170 -
1691683800.9898286-CDS-L-elsbetiae_contig6962:8093..81701691683800.9898286-CDS-L-elsbetiae_contig6962:8093..8170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6962 8094..8170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6962.15736.1prot_L-elsbetiae_contig6962.15736.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6962 6907..8170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6962.15736.1

>prot_L-elsbetiae_contig6962.15736.1 ID=prot_L-elsbetiae_contig6962.15736.1|Name=mRNA_L-elsbetiae_contig6962.15736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
CIKDSRRGRSRGAGRRGILGPAGSIRCRPVPGRLRDGPHRVRRRERVVHL
HRPAPARVVRPLRGVQGRADAAPGRGRGHAGPPEDRRRRGRVAAASCLPA
PQGHLEPAALRAERRGRPRLLGREGPDPGSR
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mRNA from alignment at L-elsbetiae_contig6962:6907..8170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6962.15736.1 ID=mRNA_L-elsbetiae_contig6962.15736.1|Name=mRNA_L-elsbetiae_contig6962.15736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1264bp|location=Sequence derived from alignment at L-elsbetiae_contig6962:6907..8170- (Laminarionema elsbetiae ELsaHSoW15)
TGCATTAAGGACAGCAGGAGAGGGAGAAGCAGGGGCGCCGGCAGGCGTGG
CATCCTCGGACCAGCAGGCTCGATCAGGCGAGGGCAAAGCGACTGCGTTA
GTAAATAATACTTCGACTTCATTGTTGACGAAGGTGGGGAGTGCTGAACC
CTGCTCGCGATAAAACACCACAGACAGGCACCGCAGGAGGCCCCCCCCCC
CCCTCCTGTGTGACCCCGGCTGGGTCGTCTAGCTAGTCGTAGTGGAGGAA
GGGGGCCAGTGGAGCAGCCGACGAATAAGCCAAAAATGGGAGGGAAACAA
AACAAAGGGTTGTCCGAATGTCGTGCCTAAATATGTATGGCAGCTCTGTA
CGTTTGTAGCTCCTTGCCGCGGTGCCCAAAGGCTGAGAAGCAACCTTTGA
CTTCCGCTACAATACCTAAACAACTCTGTATATTTACTGCTGTACACGCT
TATAGGCAGGCGTTCCACAAGTGTTCAGTTCAGCAGACTTTGCGCACGGA
GTTTACCGCGCCCGCGCCCAGCCTGGTTGGACGCCACCACCGTAGTACAA
ATTAGCCAACCTAACACGAAGACAGATCGCGCACAGAGTGGGTGTTTGAT
TTAGATAGGCTGGTAAGTGTTGTCGAGTGCGGGGCATCTGGTCGACAGCA
ATTTTGAATTTCGACTCGACCCGAAAGATAGAATATCGTACATATTTATA
TATGCATGTAGAATATTAATTTCACCCCAAACCGTTTTGTTTTTGTGGCG
CTCTTCGCCGACATCGTTTCGGCTTTATTTACCGACCCGACGCGCCGCAC
GGCGGGCATGTTTCTCTTGTCTCTTATGGCATACGCCGCTACAGCTATTT
TGATTGGTGCGTCAAGAGCCGCCGCCACCGCCGCCGCCGCCGCAACTCAA
AACCCGCCGTCCTGTTGCCTCGCACCCCAACAACAACAACAACAACAGGT
GCCGGCCGGTGCCTGGCCGCCTTCGCGACGGCCCTCACCGAGTGCGGCGG
CGGGAGAGAGTGGTACACCTCCACCGCCCAGCTCCAGCTCGCGTCGTACG
ACCTCTGCGTGGCGTGCAGGGCCGCGCCGACGCTGCACCTGGCCGTGGAC
GGGGGCATGCCGGCCCGCCTGAAGACCGGCGACGGCGCGGCCGGGTCGCG
GCGGCTTCCTGCCTTCCGGCCCCGCAGGGTCACCTGGAACCTGCCGCCCT
CCGCGCTGAACGGCGAGGAAGACCCCGTCTTCTCGGACGTGAAGGTCCTG
ATCCTGGGTCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6962:6907..8170-

>mRNA_L-elsbetiae_contig6962.15736.1 ID=mRNA_L-elsbetiae_contig6962.15736.1|Name=mRNA_L-elsbetiae_contig6962.15736.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig6962:6907..8170- (Laminarionema elsbetiae ELsaHSoW15)
TGCATTAAGGACAGCAGGAGAGGGAGAAGCAGGGGCGCCGGCAGGCGTGG
CATCCTCGGACCAGCAGGCTCGATCAGTGCATTAAGGACAGCAGGAGAGG
GAGAAGCAGGGGCGCCGGCAGGCGTGGCATCCTCGGACCAGCAGGCTCGA
TCAGGTGCCGGCCGGTGCCTGGCCGCCTTCGCGACGGCCCTCACCGAGTG
CGGCGGCGGGAGAGAGTGGTACACCTCCACCGCCCAGCTCCAGCTCGCGT
CGTACGACCTCTGCGTGGCGTGCAGGGCCGCGCCGACGCTGCACCTGGCC
GTGGACGGGGGCATGCCGGCCCGCCTGAAGACCGGCGACGGCGCGGCCGG
GTCGCGGCGGCTTCCTGCCTTCCGGCCCCGCAGGGTCACCTGGAACCTGC
CGCCCTCCGCGCTGAACGGCGAGGAAGACCCCGTCTTCTCGGACGTGAAG
GTCCTGATCCTGGGTCACGGGTGCCGGCCGGTGCCTGGCCGCCTTCGCGA
CGGCCCTCACCGAGTGCGGCGGCGGGAGAGAGTGGTACACCTCCACCGCC
CAGCTCCAGCTCGCGTCGTACGACCTCTGCGTGGCGTGCAGGGCCGCGCC
GACGCTGCACCTGGCCGTGGACGGGGGCATGCCGGCCCGCCTGAAGACCG
GCGACGGCGCGGCCGGGTCGCGGCGGCTTCCTGCCTTCCGGCCCCGCAGG
GTCACCTGGAACCTGCCGCCCTCCGCGCTGAACGGCGAGGAAGACCCCGT
CTTCTCGGACGTGAAGGTCCTGATCCTGGGTCACGG
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