mRNA_L-elsbetiae_contig696.15734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig696.15734.1
Unique NamemRNA_L-elsbetiae_contig696.15734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig696.15734.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 9.280e-18
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 2 
Query:  119 FSRHPAARR-MSDKIGREALRGAEGHAVDLIFEVLTSEEWAGLLGAPLERAVAKGHRDLAQRLVRAGAEIGDALHEAIRSGHIEIVS 376
            FSRH  ++  ++++ GR AL+GAEG   DL  EVLT+  WA +L  PLE A A+G+  L Q+L+RAGA++G ALH A+R GH E+V+
Sbjct:    7 FSRHTCSQNALANEQGRRALKGAEGETFDLFSEVLTTHGWAEMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVT 93
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BLAST of mRNA_L-elsbetiae_contig696.15734.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.150e-16
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:  197 VDLIFEVLTSEEWAGLLGAPLERAVAKGHRDLAQRLVRAGAEIGDALHEAIRSGHIEIVS 376
            VD IFE+LTS++ A LL A LE A AKG++DLAQRLVRAGAEIGDALH A+  GH EIVS
Sbjct:    2 VDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVS 61
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BLAST of mRNA_L-elsbetiae_contig696.15734.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.240e-13
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:  146 MSDKIGREALRGAEGHAVDLIFEVLTSEEWAGLLGAPLERAVAKGHRDLAQRLVRAGAEIGDALHEAIRSGHIEI 370
            M+++  R ALRG E    DL  E  T ++WAGL+   LE A  +GH  L ++LV AGAEIG A+H A+R GH +I
Sbjct:    1 MANECARGALRGEEERIFDLAAETCTPKQWAGLMQPFLEHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDI 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig696.15734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL12_ECTSI9.280e-1850.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXK5_9PHAE4.150e-1671.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL4_ECTSI2.240e-1348.00Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig696contigL-elsbetiae_contig696:16387..16762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LL12
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size376
Cds size231
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.2563777-UTR-L-elsbetiae_contig696:16386..165311622816771.2563777-UTR-L-elsbetiae_contig696:16386..16531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 16387..16531 +
1691683800.9035852-UTR-L-elsbetiae_contig696:16386..165311691683800.9035852-UTR-L-elsbetiae_contig696:16386..16531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig696 16387..16531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.2688036-CDS-L-elsbetiae_contig696:16531..167621622816771.2688036-CDS-L-elsbetiae_contig696:16531..16762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 16532..16762 +
1691683800.9153905-CDS-L-elsbetiae_contig696:16531..167621691683800.9153905-CDS-L-elsbetiae_contig696:16531..16762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 16532..16762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig696.15734.1prot_L-elsbetiae_contig696.15734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig696 16532..16762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig696.15734.1

>prot_L-elsbetiae_contig696.15734.1 ID=prot_L-elsbetiae_contig696.15734.1|Name=mRNA_L-elsbetiae_contig696.15734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MSDKIGREALRGAEGHAVDLIFEVLTSEEWAGLLGAPLERAVAKGHRDLA
QRLVRAGAEIGDALHEAIRSGHIEIVS
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mRNA from alignment at L-elsbetiae_contig696:16387..16762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig696.15734.1 ID=mRNA_L-elsbetiae_contig696.15734.1|Name=mRNA_L-elsbetiae_contig696.15734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=376bp|location=Sequence derived from alignment at L-elsbetiae_contig696:16387..16762+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGTGCCACACGCAGGCCGGGGCGAAAACTGAAACCGCAGACGGGTGG
GTGTGGATGTGGACCAAAATAACTGAACTGATTGAGCCGGTCGACAAAAC
GCACATTCGACAGAAGACTTCAGCAGGCATCCAGCTGCCAGACGGATGTC
AGATAAGATCGGACGAGAAGCACTTCGAGGCGCAGAGGGCCATGCGGTAG
ATCTTATCTTCGAAGTGCTGACATCCGAGGAGTGGGCGGGGTTACTGGGA
GCTCCGCTAGAGCGTGCCGTAGCCAAGGGACACAGAGACCTCGCACAGAG
GCTAGTTAGGGCAGGAGCGGAGATCGGGGATGCATTGCATGAGGCCATTC
GAAGCGGGCATATAGAAATCGTGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig696:16387..16762+

>mRNA_L-elsbetiae_contig696.15734.1 ID=mRNA_L-elsbetiae_contig696.15734.1|Name=mRNA_L-elsbetiae_contig696.15734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig696:16387..16762+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGATAAGATCGGACGAGAAGCACTTCGAGGCGCAGAGGGCCATGC
GGTAGATCTTATCTTCGAAGTGCTGACATCCGAGGAGTGGGCGGGGTTAC
TGGGAGCTCCGCTAGAGCGTGCCGTAGCCAAGGGACACAGAGACCTCGCA
CAGAGGCTAGTTAGGGCAGGAGCGGAGATCGGGGATGCATTGCATGAGGC
CATTCGAAGCGGGCATATAGAAATCGTGAGCATGTCAGATAAGATCGGAC
GAGAAGCACTTCGAGGCGCAGAGGGCCATGCGGTAGATCTTATCTTCGAA
GTGCTGACATCCGAGGAGTGGGCGGGGTTACTGGGAGCTCCGCTAGAGCG
TGCCGTAGCCAAGGGACACAGAGACCTCGCACAGAGGCTAGTTAGGGCAG
GAGCGGAGATCGGGGATGCATTGCATGAGGCCATTCGAAGCGGGCATATA
GAAATCGTGAGC
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