mRNA_L-elsbetiae_contig695.15721.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig695.15721.1
Unique NamemRNA_L-elsbetiae_contig695.15721.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig695.15721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig695contigL-elsbetiae_contig695:7088..7539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.4582608-CDS-L-elsbetiae_contig695:7087..74111622816770.4582608-CDS-L-elsbetiae_contig695:7087..7411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig695 7088..7411 +
1691683800.3523972-CDS-L-elsbetiae_contig695:7087..74111691683800.3523972-CDS-L-elsbetiae_contig695:7087..7411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig695 7088..7411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.4691496-UTR-L-elsbetiae_contig695:7411..75391622816770.4691496-UTR-L-elsbetiae_contig695:7411..7539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig695 7412..7539 +
1691683800.3690755-UTR-L-elsbetiae_contig695:7411..75391691683800.3690755-UTR-L-elsbetiae_contig695:7411..7539Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig695 7412..7539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig695.15721.1prot_L-elsbetiae_contig695.15721.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig695 7088..7411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig695.15721.1

>prot_L-elsbetiae_contig695.15721.1 ID=prot_L-elsbetiae_contig695.15721.1|Name=mRNA_L-elsbetiae_contig695.15721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
KNALAVTFERTIRFDRFFRLGTPPTVPRAFGGHLGRGECLAAKFVVGAGA
GAEIKRLKKFKPARKFKFVAVAFLSCVRGRVDQRSITATLWKSTASTYNV
AGPHKET*
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mRNA from alignment at L-elsbetiae_contig695:7088..7539+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig695.15721.1 ID=mRNA_L-elsbetiae_contig695.15721.1|Name=mRNA_L-elsbetiae_contig695.15721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig695:7088..7539+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAATGCTTTGGCCGTAACTTTTGAACGAACCATCCGATTTGACCGATT
CTTTCGTCTAGGCACACCCCCGACCGTCCCCCGTGCGTTCGGTGGACACT
TGGGGCGTGGTGAGTGCCTCGCAGCAAAGTTCGTAGTTGGTGCGGGGGCG
GGCGCGGAGATTAAAAGATTAAAAAAATTCAAACCCGCCAGAAAATTCAA
ATTTGTGGCGGTTGCTTTTTTATCGTGCGTGCGTGGGAGGGTTGATCAAC
GCAGCATCACAGCGACGCTCTGGAAATCAACAGCGAGCACGTACAACGTC
GCAGGACCCCATAAGGAGACTTAAGCGGTCTGTTACGCGTGCCGCGGGGA
TGTATCATGAACGCGCGGTCACAAGACAATGTTCTCAAAAAAGGCGCGCG
GGCAGTTGCAGCTGCTGCCGCGTCAGCTGAAAACACACCAACACCAAAAA
TC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig695:7088..7539+

>mRNA_L-elsbetiae_contig695.15721.1 ID=mRNA_L-elsbetiae_contig695.15721.1|Name=mRNA_L-elsbetiae_contig695.15721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig695:7088..7539+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAATGCTTTGGCCGTAACTTTTGAACGAACCATCCGATTTGACCGATT
CTTTCGTCTAGGCACACCCCCGACCGTCCCCCGTGCGTTCGGTGGACACT
TGGGGCGTGGTGAGTGCCTCGCAGCAAAGTTCGTAGTTGGTGCGGGGGCG
GGCGCGGAGATTAAAAGATTAAAAAAATTCAAACCCGCCAGAAAATTCAA
ATTTGTGGCGGTTGCTTTTTTATCGTGCGTGCGTGGGAGGGTTGATCAAC
GCAGCATCACAGCGACGCTCTGGAAATCAACAGCGAGCACGTACAACGTC
GCAGGACCCCATAAGGAGACTTAAAAAAATGCTTTGGCCGTAACTTTTGA
ACGAACCATCCGATTTGACCGATTCTTTCGTCTAGGCACACCCCCGACCG
TCCCCCGTGCGTTCGGTGGACACTTGGGGCGTGGTGAGTGCCTCGCAGCA
AAGTTCGTAGTTGGTGCGGGGGCGGGCGCGGAGATTAAAAGATTAAAAAA
ATTCAAACCCGCCAGAAAATTCAAATTTGTGGCGGTTGCTTTTTTATCGT
GCGTGCGTGGGAGGGTTGATCAACGCAGCATCACAGCGACGCTCTGGAAA
TCAACAGCGAGCACGTACAACGTCGCAGGACCCCATAAGGAGACTTAA
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