mRNA_L-elsbetiae_contig6948.15719.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6948.15719.1
Unique NamemRNA_L-elsbetiae_contig6948.15719.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: D7FY65_ECTSI (AAA_12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY65_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.280e-19
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGG-RRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VDSCQGSDADV++ISTVRSGG   KLSGFM DR RVNVAISRAK+ECI+VGD+ TL
Sbjct:  620 VDSCQGSDADVVVISTVRSGGVGYKLSGFMTDRRRVNVAISRAKEECIIVGDKHTL 675          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: C1E7F3_MICCC (AAA_12 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E7F3_MICCC)

HSP 1 Score: 66.6 bits (161), Expect = 2.610e-13
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VD+CQG++ D ++IS VRS GR+ + GF+ D  RVNVAISRAK+ CI+ GDR T+
Sbjct:    7 VDACQGAEFDYVLISPVRSNGRKAI-GFVADSRRVNVAISRAKRMCIIFGDRRTM 60          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A7S0PMJ3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PMJ3_MICPS)

HSP 1 Score: 67.8 bits (164), Expect = 9.300e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VD+CQG++ D ++IS VRS GRR + GF+ D  RVNVA+SRAK+ CI+ GDR T+
Sbjct:  557 VDACQGAEFDYVLISPVRSNGRRAI-GFVADSRRVNVAVSRAKRMCIIFGDRKTM 610          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI000C77B63B (putative regulator of nonsense transcripts 1 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77B63B)

HSP 1 Score: 63.9 bits (154), Expect = 4.840e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VD  QGS+ DVIIIS VRSGG     GF+ D+ RVNVA++RAKQ  I++GD DTL
Sbjct:   96 VDGYQGSERDVIIISCVRSGGES--IGFLSDKERVNVALTRAKQALILIGDLDTL 148          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A7S0GNV1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GNV1_MICPS)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-10
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VD+CQGS+ D ++IST R+  RR + GF+ D  R+NVAISRAK++C+++GD  T+
Sbjct:  149 VDACQGSEFDFVLISTTRANDRRAV-GFVSDPRRINVAISRAKRQCVILGDARTM 202          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI000D142C80 (AAA domain-containing protein n=1 Tax=Brumimicrobium mesophilum TaxID=392717 RepID=UPI000D142C80)

HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    7 KQTQVDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            K + +D+ QG +ADVII+S VRS G  K+ GF+ D  R+NVA++RAK++ IV+GD  TL
Sbjct:  525 KVSTIDAFQGQEADVIILSLVRSNGEGKI-GFLSDYRRMNVALTRAKKKLIVIGDSATL 582          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A4S6Q6_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6Q6_OSTLU)

HSP 1 Score: 60.1 bits (144), Expect = 4.770e-9
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VDS QGS+ADV++ S VRS  +  + GF+ D+ R+NVA++RAK   IV+G RDTL
Sbjct:  466 VDSFQGSEADVVVCSAVRSNAKANV-GFLSDKRRLNVALTRAKYSSIVLGSRDTL 519          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A2N7WHV9_9BURK (DNA helicase n=5 Tax=Burkholderiaceae TaxID=119060 RepID=A0A2N7WHV9_9BURK)

HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VDS QGS+ADV+I+S VR+  R  L GF+ DR R+NVA+SRAK + I+VG  D L
Sbjct: 1083 VDSFQGSEADVVILSLVRNNPRNAL-GFLRDRRRMNVALSRAKTQLIIVGSLDFL 1136          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: UPI001B959F51 (AAA domain-containing protein n=2 Tax=Burkholderia cepacia complex TaxID=87882 RepID=UPI001B959F51)

HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDTL 183
            VDS QGS+ADV+I+S VR+  R  L GF+ DR R+NVA+SRAK + I+VG  D L
Sbjct: 1083 VDSFQGSEADVVILSLVRNNPRNAL-GFLRDRRRMNVALSRAKAQLIIVGSLDFL 1136          
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Match: A0A5A8DY40_CAFRO (AAA domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DY40_CAFRO)

HSP 1 Score: 59.3 bits (142), Expect = 9.060e-9
Identity = 27/54 (50.00%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   19 VDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQECIVVGDRDT 180
            VDS QG +A+ +++S VRS  R ++ GF+ D  R+NVA++RA++ C+VVGD DT
Sbjct:  860 VDSYQGQEAEAVVLSLVRSNARGEV-GFLADSRRINVAVTRARRLCVVVGDSDT 912          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6948.15719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY65_ECTSI3.280e-1980.36AAA_12 domain-containing protein n=1 Tax=Ectocarpu... [more]
C1E7F3_MICCC2.610e-1358.18AAA_12 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S0PMJ3_MICPS9.300e-1258.18Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI000C77B63B4.840e-1161.82putative regulator of nonsense transcripts 1 n=1 T... [more]
A0A7S0GNV1_MICPS2.090e-1052.73Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
UPI000D142C803.500e-952.54AAA domain-containing protein n=1 Tax=Brumimicrobi... [more]
A4S6Q6_OSTLU4.770e-954.55Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A2N7WHV9_9BURK4.840e-958.18DNA helicase n=5 Tax=Burkholderiaceae TaxID=119060... [more]
UPI001B959F514.840e-958.18AAA domain-containing protein n=2 Tax=Burkholderia... [more]
A0A5A8DY40_CAFRO9.060e-950.00AAA domain-containing protein n=5 Tax=Cafeteria ro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6948contigL-elsbetiae_contig6948:7845..8027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue6.5e-16
Seed eggNOG ortholog2880.D7FY65
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816770.310306-CDS-L-elsbetiae_contig6948:7844..80271622816770.310306-CDS-L-elsbetiae_contig6948:7844..8027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6948 7845..8027 +
1691683800.224565-CDS-L-elsbetiae_contig6948:7844..80271691683800.224565-CDS-L-elsbetiae_contig6948:7844..8027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6948 7845..8027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6948.15719.1prot_L-elsbetiae_contig6948.15719.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6948 7845..8027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6948.15719.1

>prot_L-elsbetiae_contig6948.15719.1 ID=prot_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPKQTQVDSCQGSDADVIIISTVRSGGRRKLSGFMLDRSRVNVAISRAKQ
ECIVVGDRDTL
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mRNA from alignment at L-elsbetiae_contig6948:7845..8027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6948.15719.1 ID=mRNA_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:7845..8027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAAACAAACGCAGGTTGACTCCTGCCAAGGATCTGATGCGGACGT GATCATCATTTCGACGGTTCGCAGCGGCGGAAGGCGCAAGCTGTCCGGCT TCATGCTTGACCGCTCACGTGTCAACGTGGCCATCTCCAGGGCCAAGCAG GAGTGCATCGTTGTCGGCGATAGGGACACTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6948:7845..8027+

>mRNA_L-elsbetiae_contig6948.15719.1 ID=mRNA_L-elsbetiae_contig6948.15719.1|Name=mRNA_L-elsbetiae_contig6948.15719.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig6948:7845..8027+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCAAACAAACGCAGGTTGACTCCTGCCAAGGATCTGATGCGGACGT
GATCATCATTTCGACGGTTCGCAGCGGCGGAAGGCGCAAGCTGTCCGGCT
TCATGCTTGACCGCTCACGTGTCAACGTGGCCATCTCCAGGGCCAAGCAG
GAGTGCATCGTTGTCGGCGATAGGGACACTTTGATGCCCAAACAAACGCA
GGTTGACTCCTGCCAAGGATCTGATGCGGACGTGATCATCATTTCGACGG
TTCGCAGCGGCGGAAGGCGCAAGCTGTCCGGCTTCATGCTTGACCGCTCA
CGTGTCAACGTGGCCATCTCCAGGGCCAAGCAGGAGTGCATCGTTGTCGG
CGATAGGGACACTTTG
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