mRNA_L-elsbetiae_contig6941.15711.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6941.15711.1 vs. uniprot
Match: A0A6H5KVN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVN9_9PHAE) HSP 1 Score: 609 bits (1571), Expect = 3.980e-198 Identity = 473/1058 (44.71%), Postives = 556/1058 (52.55%), Query Frame = 1 Query: 91 EQEVENSSHAQQLVGGKSEIVNGESNQEDRGKDSPLTSRKTLPTEG--DHGGSVSDFQEPRKPPDDTAVDYLPPRVPRDGDNDEDQ-EQSVGSLDMDHQSS-FLIDDDRD-SPQRLLPNRQDRVGPGRLSDDDGSDLFSPQPFTAPE-EELDVGGGTYDEQQEKLVPPRSHGDRCRTRAKQHERTVRGVGLRRVKPQVR-EENDGQRKGPGSGSSRADAGMASNVRRDGQERVIQQLTRDNGMLQRKVAGYQLALQLAADEDDFSTSPSFSEAMKLQQAAPPSFPRGGGTPAPSPRVARGWTHKNPPSASRTSPIERNLSYTTLVRQLDAGERRARMLKQANEVLGARVNELESGAVLRATQSRLAERDEEIAALREELSVMNRLARAQDRKFEGSQGYALTRRLWLAEEDLRIARSTISSLGAEVYGLRQFRKTQSQDRRRRRSAAEPTPDTASNTSARRSTLKRPVRRRRPSHQGDAAHGIRIKRQEQGKNSSSSSVGKRESRSPTTVAFGRSVEAANGPLSGGXXXXXXVKTVRSVDGEATSVLDGQATKDQTVEVKAEMLQRALANMRSKA-------KGELRAARAEIDELKEDKAALGKTLDTKAKEIRLQLLQ-------------------------------------------------------VNRLKHELQDLSAGAFKLEEASCAVAAASLPTRTRGIFSAAAAAGEVSTTAATKLGVAVEERRAKSAAVGNISSSSRPAAAGADRASLSSLVVTQRAPPPRSDSHPRAGRS---LRGSLVGQSSPMEWNRDWGGEGTEASRAPVTIPPDGTTMTTREVVEQEHA-----------GRAI-------AVQSSDKGGGEIA---GAAEVEQTAVSGKPMETEVAAPAAEGKTR---RPCPLAGILDMSEPPLRGHRRSYYNEDDGRVYRLSHC-DTRTAAGFEEPPREEERMKCVIDFKGEVQHGEDCVLRGVAHKTL---PPNKRNSLALEPRGSEQEPPPLAQASLTG------AISVRTWHKDSASGWDPAGVGEAARLSIV 2946 EQE+ N + AQ+LV G++ I ++ GK + + TEG D GS + +E LP RV DGD D D + SLDM+ + F DDDR+ P++ L R G LS +DL SPQPF APE EEL VGG EQQ +P + HGDRC TR ++ ER +RG R P+ R +E+DG+ + S SRA+A A+++RR QER+IQQLTRDNG+LQRKVAGYQLALQL+ADEDDFSTSPSFS AM+LQQAAPP+FPRGGGTPAPSPRVARGWTH+NPP R SP+ERNLSYTTLVRQLD G R+AR LK+ NE LGARVNELESGAVLRATQSRL+ERDEEI ALREELSVMNRLARAQDRKFEG GYAL RRLWL EE+LR ARSTIS+LGAE GQ TK Q +VKAEML+RALANMR KA KGEL AAR EID LKEDKA L + L+TKA+EIR+QLLQ VNRLK E+Q LSAGA KLEEASC VAAAS P R RGI SAAAAAGE S A TKL E RAKSA SRP A G AS++ L +Q PPPR D R+ R R L GQ SPM WNR WGG+G + A T PD T A GRA+ A +S+D+G G + G+ + +Q V KP + E A AA G PCPLAG++DMS+PPLR HRRSYYNEDDG+VY + D TAA E PR++ER CV+DF+G V+HG C L +A ++ R L + + P + L G ISVRTWH+DS S WDP G G I Sbjct: 71 EQEL-NKTQAQRLVEGENAI-------DEEGKGVAYRNSQGGRTEGMDDREGSETGLKERD----------LPFRVSTDGDGDNDDGARENPSLDMNFDKAVFSPDDDRNFPPEKFLG----RTGSVELS---SNDLSSPQPFGAPEKEELHVGGEVQLEQQ---LPHKPHGDRCETRGREKERDIRGARSRNFNPKYRSQESDGRIRLRASSQSRANARGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSAAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHRNPPPPGRISPVERNLSYTTLVRQLDMGGRQARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE---------------------------------------------------------------------------------------------------------------------------GQETKQQMADVKAEMLERALANMRKKARTVLDVAKGELEAARVEIDGLKEDKAVLTQALETKAREIRMQLLQAPKCSNPYVQLCPSNGMDSASANQNPMVPDAEQGLAFFRPQPHKPETRPPPLRVQVNRLKREIQHLSAGAIKLEEASCVVAAASFPLRARGISSAAAAAGETSALAVTKL----HEGRAKSAVY------SRPDAGGGG-ASMNLLDRSQ--PPPRPDRWLRSEREPWGARARLSGQFSPMGWNRVWGGDGAVTAPAADTGTPDAAGEATANGAPPAAAAVAGEVVSGALGRALSGLQADEAAKSADRGDGGVGVKLGSIKGKQEEVVAKPEKVEDIAAAAVGGEETHFHPCPLAGLMDMSDPPLRSHRRSYYNEDDGKVYSIPRTSDDVTAAELTEVPRDDERSMCVVDFQGIVRHGVGCALSQLAPRSARVSSATSRKQLLNSTSAAPGQDPDQERLLLPGENPLSIGISVRTWHRDSTSSWDPTGEGATGACHIA 964
BLAST of mRNA_L-elsbetiae_contig6941.15711.1 vs. uniprot
Match: D7FQ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ47_ECTSI) HSP 1 Score: 555 bits (1430), Expect = 1.980e-179 Identity = 427/916 (46.62%), Postives = 503/916 (54.91%), Query Frame = 1 Query: 1 LKISASSSDAGVVELRSEQPAQQAYDKGSEEQEVENSSHAQQLVGGKSEIVNGESNQEDRGKDSPLTSRKTLPTEG--DHGGSVSDFQEPRKPPDDTAVDYLPPRVPRDGDNDEDQ-EQSVGSLDMDHQSS-FLIDDDRD-SPQRLLPNRQDRVGPGRLSDDDGSDLFSPQPFTAPE-EELDVGGGTYDEQQEKLVPPRSHGDRCRTRAKQHERTVRGVGLRRVKPQVR-EENDGQRKGPGSGSSRADAGMASNVRRDGQERVIQQLTRDNGMLQRKVAGYQLALQLAADEDDFSTSPSFSEAMKLQQAAPPSFPRGGGTPAPSPRVARGWTHKNPPSASRTSPIERNLSYTTLVRQLDAGERRARMLKQANEVLGARVNELESGAVLRATQSRLAERDEEIAALREELSVMNRLARAQDRKFEGSQGYALTRRLWLAEEDLRIARSTISSLGAEVYGLRQFRKTQSQDRRRRRSAAEPTPDTASNTSARRSTLKRPVRRRRPSHQGDAAHGIRIKRQEQGKNSSSSSVGKRESRSPTTVAFGRSVEAANGPLSGGXXXXXXVKTVRSVDGEATSVLDGQATKDQTVEVKAEMLQRALANMRSKAKGELRAARAEIDELKEDKAALGKTLDTKAKEIRLQLLQVNRLKHELQDLSAGAFKLEEASCAVAAASLPTRTRGIFSAAAAAGEVSTTAATKLGVAVEERRAKSAAVGNISSSSRPAAAGADRASLSSLVVTQRAPPPRSDSHPRAGRS---LRGSLVGQSSPMEWNRDWGGEGTEASRAPVTIPPDGTTMTTR------------EVVEQEHAGRAI-------AVQSSDKGGGEIA---GAAEVEQTAVSGKPMETE-VAAPAA------EGKTRRPCPLAGILDMSEPPLRGHRRSYYNEDDGRVYRL 2631 L+ISASSSDAG S A+Q + ++ ++ N + Q+LV G++ I ++ GK + + TEG + GS + +E LP RVP D D D+D + SLDM+ ++ F +DDDRD SP++ L R G S +DLFSPQPF APE EEL VG EQ+ +P + HGDRC+TR ++ E +RG R KP+ R +ENDG+ + S SRADAG A+++RR QER+IQQLTRDNG+LQRKVAGYQLALQL+ADEDDFSTSPSFS AM+LQQAAPP+FPRGGGTPAPSPRVARGWTH+NPP R SP+ERNLSYTTLVRQLD G RRAR LK+ NE LGARVNELESGAVLRATQSRL+ERDEEI ALREELSVMNRLARAQDRKFEG GYAL RRLWL EE+LR ARSTIS+LGAE AKGEL AAR EID LKEDKA L + L+TKA+EIR+QLLQVNRLK E+Q LSAGA KLEEASC VAAASLP R RGI SAAA AG S +A TKL E RAKSA SRP A G AS++ L +Q PPPRSD R+ R R L GQ SPM W+RDWGGEG + T PD T EVV GRA+ A +S+D+G G + + E +Q V KP + E +AA AA E PCPLAG++DMSE PLR HRRSYYNEDDG+ L Sbjct: 61 LQISASSSDAGTAGKTSAPLARQTGSELAQGEQELNKTQTQRLVDGENGI-------DEEGKGVAFGNAQESRTEGIDNREGSETGLKERD----------LPFRVPTDSDGDDDDGAREYPSLDMNLDNAVFSLDDDRDPSPEKFLG----RTGSVEFS---SNDLFSPQPFGAPEKEELHVGDEVQLEQE---LPHKPHGDRCKTRGRKKESDIRGARSRTFKPRYRSQENDGRTRLRASSQSRADAGGAASIRRQRQERLIQQLTRDNGVLQRKVAGYQLALQLSADEDDFSTSPSFSTAMQLQQAAPPAFPRGGGTPAPSPRVARGWTHQNPPPPGRISPVERNLSYTTLVRQLDMGGRRARTLKRENEALGARVNELESGAVLRATQSRLSERDEEIVALREELSVMNRLARAQDRKFEGCHGYALARRLWLTEEELRTARSTISTLGAE-----------------------------------------------------------------------------------------------------------------------------------------------------AKGELEAARVEIDGLKEDKAVLTQALETKAREIRMQLLQVNRLKREIQHLSAGAIKLEEASCVVAAASLPLRARGISSAAAGAGGTSASAVTKL----HEGRAKSAVY------SRPGAGGGG-ASMNLLDRSQ--PPPRSDRRLRSEREPWGARARLSGQFSPMGWDRDWGGEGAVTAPTAGTGTPDAAGEATATGXXXXXAAVAGEVVSGAF-GRALSGLQADEAAKSADRGDGGVGVKLDSIEGKQEEVVAKPEKVEDIAAVAAXXAAGGEATHLHPCPLAGLMDMSELPLRSHRRSYYNEDDGKRQHL 786 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6941.15711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6941.15711.1 >prot_L-elsbetiae_contig6941.15711.1 ID=prot_L-elsbetiae_contig6941.15711.1|Name=mRNA_L-elsbetiae_contig6941.15711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=904bp MDHQSSFLIDDDRDSPQRLLPNRQDRVGPGRLSDDDGSDLFSPQPFTAPEback to top mRNA from alignment at L-elsbetiae_contig6941:539..7635+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6941.15711.1 ID=mRNA_L-elsbetiae_contig6941.15711.1|Name=mRNA_L-elsbetiae_contig6941.15711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7097bp|location=Sequence derived from alignment at L-elsbetiae_contig6941:539..7635+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6941:539..7635+ >mRNA_L-elsbetiae_contig6941.15711.1 ID=mRNA_L-elsbetiae_contig6941.15711.1|Name=mRNA_L-elsbetiae_contig6941.15711.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5424bp|location=Sequence derived from alignment at L-elsbetiae_contig6941:539..7635+ (Laminarionema elsbetiae ELsaHSoW15)back to top |