mRNA_L-elsbetiae_contig6929.15701.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6929.15701.1
Unique NamemRNA_L-elsbetiae_contig6929.15701.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6929.15701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6929contigL-elsbetiae_contig6929:5821..6473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6929.15701.1prot_L-elsbetiae_contig6929.15701.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6929 5894..6244 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.2734532-UTR-L-elsbetiae_contig6929:5820..58931622816768.2734532-UTR-L-elsbetiae_contig6929:5820..5893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6929 5821..5893 +
1691683798.5755894-UTR-L-elsbetiae_contig6929:5820..58931691683798.5755894-UTR-L-elsbetiae_contig6929:5820..5893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6929 5821..5893 +
1622816768.2946856-UTR-L-elsbetiae_contig6929:6244..64731622816768.2946856-UTR-L-elsbetiae_contig6929:6244..6473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6929 6245..6473 +
1691683798.6019876-UTR-L-elsbetiae_contig6929:6244..64731691683798.6019876-UTR-L-elsbetiae_contig6929:6244..6473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6929 6245..6473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816768.2832131-CDS-L-elsbetiae_contig6929:5893..62441622816768.2832131-CDS-L-elsbetiae_contig6929:5893..6244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 5894..6244 +
1691683798.5861807-CDS-L-elsbetiae_contig6929:5893..62441691683798.5861807-CDS-L-elsbetiae_contig6929:5893..6244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6929 5894..6244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6929.15701.1

>prot_L-elsbetiae_contig6929.15701.1 ID=prot_L-elsbetiae_contig6929.15701.1|Name=mRNA_L-elsbetiae_contig6929.15701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MYHIIHTGGALTPTMNSQFSLKIRSLNFPVAGNTLVHNLQTNWGSTPPKP
LPPPLAKKRQHLKHTTGPIHTTPCLLPRSHDTKHTHFPPRGEEQKENYPR
RRHNNEEHLCTPMELL*
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mRNA from alignment at L-elsbetiae_contig6929:5821..6473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6929.15701.1 ID=mRNA_L-elsbetiae_contig6929.15701.1|Name=mRNA_L-elsbetiae_contig6929.15701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=653bp|location=Sequence derived from alignment at L-elsbetiae_contig6929:5821..6473+ (Laminarionema elsbetiae ELsaHSoW15)
TAAACTTTCATTGGCTCCATGTTTTGTTGTTTGTTTCTCGCCTTGGGCGG
GACAAACCCGACACGAGATTTTAATGTATCATATCATACACACAGGGGGG
GCGCTTACGCCGACAATGAATTCGCAATTCTCCCTCAAAATAAGGAGCTT
AAACTTCCCTGTTGCTGGGAACACTCTCGTCCACAACTTGCAAACCAACT
GGGGTTCCACGCCTCCAAAACCCCTTCCCCCTCCGTTGGCAAAAAAACGG
CAACATTTGAAGCACACGACAGGCCCTATTCATACAACACCTTGCCTGCT
TCCCCGTTCTCACGACACAAAACACACACATTTCCCGCCTAGAGGAGAAG
AACAAAAAGAAAACTACCCTCGACGGCGACACAACAACGAAGAACACTTA
TGTACTCCCATGGAACTGCTGTAGTACTACACAACTTACACGATACTACT
CTTGCCTGGACAATATTCAATTCTATGTTTCTGAGCGACATCTCAGACAA
ATGCACGGAGAAAGCAACCCAACGAGACAAACCGAGCCGGGAAAACAAGC
ACAACCAAACGCGACCTGCATCCCTCGCCGCCTCCGTGCAAAACCTACTA
AAAGTTGCTCCCCGCCCCGGGCTCTAGCGGCCCCGTCTTGCGTGAGAAGA
CCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6929:5821..6473+

>mRNA_L-elsbetiae_contig6929.15701.1 ID=mRNA_L-elsbetiae_contig6929.15701.1|Name=mRNA_L-elsbetiae_contig6929.15701.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig6929:5821..6473+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATCATATCATACACACAGGGGGGGCGCTTACGCCGACAATGAATTC
GCAATTCTCCCTCAAAATAAGGAGCTTAAACTTCCCTGTTGCTGGGAACA
CTCTCGTCCACAACTTGCAAACCAACTGGGGTTCCACGCCTCCAAAACCC
CTTCCCCCTCCGTTGGCAAAAAAACGGCAACATTTGAAGCACACGACAGG
CCCTATTCATACAACACCTTGCCTGCTTCCCCGTTCTCACGACACAAAAC
ACACACATTTCCCGCCTAGAGGAGAAGAACAAAAAGAAAACTACCCTCGA
CGGCGACACAACAACGAAGAACACTTATGTACTCCCATGGAACTGCTGTA
GATGTATCATATCATACACACAGGGGGGGCGCTTACGCCGACAATGAATT
CGCAATTCTCCCTCAAAATAAGGAGCTTAAACTTCCCTGTTGCTGGGAAC
ACTCTCGTCCACAACTTGCAAACCAACTGGGGTTCCACGCCTCCAAAACC
CCTTCCCCCTCCGTTGGCAAAAAAACGGCAACATTTGAAGCACACGACAG
GCCCTATTCATACAACACCTTGCCTGCTTCCCCGTTCTCACGACACAAAA
CACACACATTTCCCGCCTAGAGGAGAAGAACAAAAAGAAAACTACCCTCG
ACGGCGACACAACAACGAAGAACACTTATGTACTCCCATGGAACTGCTGT
AG
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