mRNA_L-elsbetiae_contig6918.15688.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6918.15688.1
Unique NamemRNA_L-elsbetiae_contig6918.15688.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6918.15688.1 vs. uniprot
Match: D8LKT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT5_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.650e-29
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 MARRSVTIEKGFHGDGTRERISWYDGATESAVLRCALVALGLPPSSTAHLLWKSGDMVDFGKPVTDGVTLHLDTV 225
            MARRSVTI      DG RE ISWYDGATE+AVLRCAL+ALGLP  S AHLLW+SGD+VD G P+TDG TLHLDTV
Sbjct:    1 MARRSVTI---VASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLWQSGDIVDLGTPITDGATLHLDTV 72
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BLAST of mRNA_L-elsbetiae_contig6918.15688.1 vs. uniprot
Match: A0A6H5LJ65_9PHAE (DUF202 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ65_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.410e-25
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:    1 MARRSVTIEKGFHGDGTRERISWYDGATESAVLRCALVALGLPPSSTAHLLWKSGDMVDFGKPVTDGVTLHLDTV 225
            MARRSVTI      DG RE ISWYDGATE+AVLRCAL+ALGLP  S AHLL +SGD+VD G P+TDG TLHLDTV
Sbjct:    1 MARRSVTI---VASDGRREGISWYDGATEAAVLRCALLALGLPLKSAAHLLRQSGDIVDLGTPITDGATLHLDTV 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6918.15688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKT5_ECTSI1.650e-2974.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJ65_9PHAE1.410e-2573.33DUF202 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6918contigL-elsbetiae_contig6918:8207..9202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size372
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6918.15688.1prot_L-elsbetiae_contig6918.15688.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6918 8207..9165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2279818-CDS-L-elsbetiae_contig6918:8206..85471622816767.2279818-CDS-L-elsbetiae_contig6918:8206..8547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 8207..8547 -
1691683797.829196-CDS-L-elsbetiae_contig6918:8206..85471691683797.829196-CDS-L-elsbetiae_contig6918:8206..8547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 8207..8547 -
1622816767.2438328-CDS-L-elsbetiae_contig6918:9134..91651622816767.2438328-CDS-L-elsbetiae_contig6918:9134..9165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 9135..9165 -
1691683797.8391058-CDS-L-elsbetiae_contig6918:9134..91651691683797.8391058-CDS-L-elsbetiae_contig6918:9134..9165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 9135..9165 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2572289-UTR-L-elsbetiae_contig6918:9165..92021622816767.2572289-UTR-L-elsbetiae_contig6918:9165..9202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6918 9166..9202 -
1691683797.8599458-UTR-L-elsbetiae_contig6918:9165..92021691683797.8599458-UTR-L-elsbetiae_contig6918:9165..9202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6918 9166..9202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6918.15688.1

>prot_L-elsbetiae_contig6918.15688.1 ID=prot_L-elsbetiae_contig6918.15688.1|Name=mRNA_L-elsbetiae_contig6918.15688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MVTAREKGFPGTTAPRNRRSCDARLSPWASHRAAPPTSSGNPETWWTSAS
PSQMASRSILTPSTPHRHQETWAAAEAAAEAAAAVAFTPQEAALEARLLT
LAPGAGAPWHNGVLVAPPHRRGAA
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mRNA from alignment at L-elsbetiae_contig6918:8207..9202-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6918.15688.1 ID=mRNA_L-elsbetiae_contig6918.15688.1|Name=mRNA_L-elsbetiae_contig6918.15688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig6918:8207..9202- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGGCGCAGCGTCACAATAGAGAAGGGATTCCATGGTGACGGCAC
GAGAGAAAGGATTTCCTGGTGAGAAATGAGATGCAAAAGAGCGCGGTAGA
GAAAGGCCCAAAGCGGGGAGGGTGCGCGTTGTGTAGATCAAACAAGAGAA
CCAAAGAGGTATTTTCTAGTTCATGTGTTCATGTATCCGCAACTGGTTCG
CACTACGTACGTCTCTATAAGATAAGATGCTGTATATATGTAGACTACAT
GTATGTACTGGTTTAGTTATTCTTCAGGTACAATAGGTGCAAGTGGTCTG
TGCGTGTACATCAATAGACTTCGTACCTGCATTTGTACGGCCGTCTCTAC
GCACACATCTTGTCGCGGAAGGGAGAGACACACCGCAGTACCGCTTCCCC
GTTGTTGTTCACACTGTCAGTGTTACATTGTACATTCATAGTACCTCGAT
ATAGTCTCGATACACTATACCTGCACGCATTTTTCTCCTCGGACCCGCTG
GTCCGCATTACAGCACGAATTTCGTCGTCGCACACGGATAGTATCTACCG
ACAGACGGGAGGTGTAGCACGGGGAGCTCGGTAGGCGCACTACGCACGCT
ACACGCACTCGTTTACCGTTCCCGTTCGATTGGGCGTGGACGTCTTTTTC
CCAAGGTACGACGGCGCCACGGAATCGGCGGTCTTGCGATGCGCGCTTGT
CGCCCTGGGCCTCCCACCGAGCAGCACCGCCCACCTCCTCTGGAAATCCG
GAGACATGGTGGACTTCGGCAAGCCCGTCACAGATGGCGTCACGCTCCAT
CTTGACACCGTCCACGCCGCACCGACATCAGGAAACGTGGGCGGCGGCGG
AGGCGGCGGCGGAGGCGGCGGCGGCGGTGGCTTTTACTCCACAGGAAGCG
GCCTTGGAGGCGCGCCTTCTGACTCTGGCGCCGGGGGCGGGAGCGCCGTG
GCACAACGGCGTGTTGGTAGCTCCACCACATCGGCGGGGGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6918:8207..9202-

>mRNA_L-elsbetiae_contig6918.15688.1 ID=mRNA_L-elsbetiae_contig6918.15688.1|Name=mRNA_L-elsbetiae_contig6918.15688.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6918:8207..9202- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGACGGCACGAGAGAAAGGATTTCCTGATGGTGACGGCACGAGAGA
AAGGATTTCCTGGTACGACGGCGCCACGGAATCGGCGGTCTTGCGATGCG
CGCTTGTCGCCCTGGGCCTCCCACCGAGCAGCACCGCCCACCTCCTCTGG
AAATCCGGAGACATGGTGGACTTCGGCAAGCCCGTCACAGATGGCGTCAC
GCTCCATCTTGACACCGTCCACGCCGCACCGACATCAGGAAACGTGGGCG
GCGGCGGAGGCGGCGGCGGAGGCGGCGGCGGCGGTGGCTTTTACTCCACA
GGAAGCGGCCTTGGAGGCGCGCCTTCTGACTCTGGCGCCGGGGGCGGGAG
CGCCGTGGCACAACGGCGTGTTGGTAGCTCCACCACATCGGCGGGGGGCG
GCGGTACGACGGCGCCACGGAATCGGCGGTCTTGCGATGCGCGCTTGTCG
CCCTGGGCCTCCCACCGAGCAGCACCGCCCACCTCCTCTGGAAATCCGGA
GACATGGTGGACTTCGGCAAGCCCGTCACAGATGGCGTCACGCTCCATCT
TGACACCGTCCACGCCGCACCGACATCAGGAAACGTGGGCGGCGGCGGAG
GCGGCGGCGGAGGCGGCGGCGGCGGTGGCTTTTACTCCACAGGAAGCGGC
CTTGGAGGCGCGCCTTCTGACTCTGGCGCCGGGGGCGGGAGCGCCGTGGC
ACAACGGCGTGTTGGTAGCTCCACCACATCGGCGGGGGGCGGCG
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