mRNA_L-elsbetiae_contig6918.15687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6918.15687.1
Unique NamemRNA_L-elsbetiae_contig6918.15687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: D8LKT7_ECTSI (LNS2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT7_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.200e-63
Identity = 104/118 (88.14%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            GAQVVYLTSRPI LA KTRTFL +TEQEGKRLPLGPL CCLEKV GVLWRELV+K+MHDYKI ALLDLA PFREAGR FGEAVFAAGIGNR+HDAVAY+AAGIPKDFIFLID ESNLR
Sbjct:   89 GAQVVYLTSRPISLAAKTRTFLASTEQEGKRLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 206          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: A0A6H5L2R2_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R2_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.400e-61
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            GAQVVYLTSRPI LA KTRTFL +TEQEGK+LPLGPL CCLEKV GVLWRELV+K+MHDYKI ALLDLA PFREAGR FGEAVFAAGIGNR+HDAVAY+AAGIPKDFIFLID ESNLR
Sbjct:  221 GAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLR 338          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: A0A835ZF08_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF08_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.510e-23
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKV----------------------------------RG---VLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAG--------------IPKDFIFLIDPESNLR 354
            GAQ++YLT+RP+ +AP+TR FL+   Q+G  LPLGPL+  L K                                   RG   V++REL+A+DMH +K + L D+A  FR AGR     VFAAG+GNRL DA+AY+ AG              IP +FI +IDP++ +R
Sbjct:  732 GAQLLYLTARPLAMAPRTRAFLVGATQDGLVLPLGPLVTNLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARERGLTDVVYRELIARDMHRFKGQVLQDVAAVFRSAGRHARSRVFAAGVGNRLTDALAYQGAGGTPFRXXXXXXMAGIPDEFICIIDPKTAIR 900          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: A0A836C9R7_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.830e-21
Identity = 66/199 (33.17%), Postives = 89/199 (44.72%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRG------------------------------------------------------------VLWRELVAKDMHDYKIKAL---------------------LDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            GA ++YLTSRP+VLA +TR FLM   Q+G  LPLGPL+ C  KVR                                                             V++RE++AKDMH++K  AL                      ++A  F  AGR   + V+AAGIGNR  DA AY+AAG+P+DFI +ID  +N++
Sbjct:  770 GAHILYLTSRPVVLAKRTRAFLMDLRQDGLLLPLGPLLTCKSKVRSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPSTLTDVVYREVIAKDMHEFKGSALQASLISALSAKNVTSGLQMLHAEVAEVFFRAGRPEDDPVYAAGIGNRETDAFAYQAAGVPEDFICIIDSSANIQ 968          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: A0A4D9DCS7_9STRA (LNS2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCS7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.870e-19
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   13 VYLTSRPIVLAPKTRTFLMAT-EQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            VYLTSRPI L   TR +L    ++EG RLP GP+   ++ +  VL+RELV K +   K + L D+ + F++AGR  G+ VF  G GN+  D  AY+ AG+    IF+I+P S +R
Sbjct:  292 VYLTSRPISLLEATRKYLANVYQEEGFRLPHGPVFTSMDSLTRVLYRELVEKTIRYMKAQVLNDIRSTFQKAGRPEGDQVFLFGFGNKSADGQAYEMAGVDPQSIFIINPSSEVR 406          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: W7TQB3_9STRA (Lipin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQB3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.150e-19
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:   13 VYLTSRPIVLAPKTRTFLMAT-EQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            VYLTSRPI L   TR +L    ++EG RLP GP+   ++ +  VL+RELV K +   K + L D+ + F++AGR  G+ VF  G GN+  D  AY+ AG+    IF+I+P S +R
Sbjct:  334 VYLTSRPISLLEATRKYLANVYQEEGFRLPHGPVFTSMDSLTRVLYRELVEKTIRYMKAQVLNDIRSTFQKAGRPEGDQVFLFGFGNKSADGQAYEMAGVDPQSIFIINPSSEVR 448          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: W6L9P4_9TRYP (LNS2 domain-containing protein n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L9P4_9TRYP)

HSP 1 Score: 82.4 bits (202), Expect = 6.610e-16
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            G  +VYL++R +    +T+ +L + EQEG RLPLGP++   +++   L +EL +K  H +KI  L  L   F    R F      AG GNR  D ++Y  AGIP   IFLIDP S LR
Sbjct:  647 GYHMVYLSARSVAQIAQTKRYLWSIEQEGVRLPLGPVLTAPQRIFSALTQEL-SKRSHLFKIACLESLRAAFPSYARPFF-----AGFGNRYTDLISYTTAGIPIPRIFLIDPTSTLR 758          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: A0A835Q6P0_VANPL (LNS2 domain-containing protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A835Q6P0_VANPL)

HSP 1 Score: 77.8 bits (190), Expect = 2.180e-15
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNL 351
            G Q+++L++R IV A  TR+FL+  +Q+GK LP GP++   + +   L+RE++ +  H++KI  L D+   F      F      AG GNR  D ++YK  GIPK  IF+I+P+  +
Sbjct:   33 GYQLLFLSARAIVQAYFTRSFLLNLKQDGKALPSGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIRALFPSDYNPFY-----AGFGNRDTDELSYKKIGIPKGKIFIINPKGEV 144          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: UPI001CC33FE3 (phosphatidate phosphatase PAH1-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC33FE3)

HSP 1 Score: 80.1 bits (196), Expect = 4.240e-15
Identity = 44/117 (37.61%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNL 351
            G Q+++L++R IV A  TR+FL+  +Q+GK LP+GP++   + +   L+RE++ +  H++KI  L D+   F +    F      AG GNR  D ++YK  GIPK  IF+I+P+  +
Sbjct:  764 GYQLLFLSARAIVQAYLTRSFLLNLKQDGKTLPIGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIKALFPKDYNPFY-----AGFGNRDTDELSYKKIGIPKGKIFIINPKGEV 875          
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Match: W6KUS6_9TRYP (LNS2 domain-containing protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KUS6_9TRYP)

HSP 1 Score: 80.1 bits (196), Expect = 4.280e-15
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWRELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKAAGIPKDFIFLIDPESNLR 354
            G ++VYL++R +    +T+ +L + EQEG RLPLGP++    +    L +EL +K  H +KI  L  +   F    R F      AG GNR  D ++Y AAGIP   IF+IDP S LR
Sbjct:  479 GYRMVYLSARSVAQIEQTKRYLWSLEQEGVRLPLGPVLTAPLRFFTALTQEL-SKQSHVFKIACLESVRDAFPAHARPFF-----AGFGNRYSDVISYDAAGIPVHRIFIIDPSSRLR 590          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6918.15687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT7_ECTSI7.200e-6388.14LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2R2_9PHAE4.400e-6187.29LNS2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZF08_9STRA2.510e-2339.05LNS2 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836C9R7_9STRA6.830e-2133.17LNS2 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A4D9DCS7_9STRA8.870e-1943.48LNS2 domain-containing protein n=1 Tax=Nannochloro... [more]
W7TQB3_9STRA9.150e-1943.48Lipin-like protein n=1 Tax=Nannochloropsis gaditan... [more]
W6L9P4_9TRYP6.610e-1641.53LNS2 domain-containing protein n=1 Tax=Phytomonas ... [more]
A0A835Q6P0_VANPL2.180e-1537.61LNS2 domain-containing protein n=2 Tax=Mesangiospe... [more]
UPI001CC33FE34.240e-1537.61phosphatidate phosphatase PAH1-like n=1 Tax=Telope... [more]
W6KUS6_9TRYP4.280e-1540.68LNS2 domain-containing protein n=1 Tax=Phytomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6918contigL-elsbetiae_contig6918:502..1657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue2.9e-52
Seed eggNOG ortholog2880.D8LKT7
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylinositol transporter activity
EggNOG OGsCOG5083@1,KOG2116@2759
EC3.1.3.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Exons2
Model size358
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.2909675-CDS-L-elsbetiae_contig6918:501..6541622816767.2909675-CDS-L-elsbetiae_contig6918:501..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 502..654 +
1691683797.8731048-CDS-L-elsbetiae_contig6918:501..6541691683797.8731048-CDS-L-elsbetiae_contig6918:501..654Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 502..654 +
1622816767.3066053-CDS-L-elsbetiae_contig6918:1452..16561622816767.3066053-CDS-L-elsbetiae_contig6918:1452..1656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 1453..1656 +
1691683797.8878272-CDS-L-elsbetiae_contig6918:1452..16561691683797.8878272-CDS-L-elsbetiae_contig6918:1452..1656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6918 1453..1656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6918.15687.1prot_L-elsbetiae_contig6918.15687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6918 502..1656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6918.15687.1

>prot_L-elsbetiae_contig6918.15687.1 ID=prot_L-elsbetiae_contig6918.15687.1|Name=mRNA_L-elsbetiae_contig6918.15687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
GAQVVYLTSRPIVLAPKTRTFLMATEQEGKRLPLGPLICCLEKVRGVLWR
ELVAKDMHDYKIKALLDLATPFREAGRAFGEAVFAAGIGNRLHDAVAYKA
AGIPKDFIFLIDPESNLRA
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mRNA from alignment at L-elsbetiae_contig6918:502..1657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6918.15687.1 ID=mRNA_L-elsbetiae_contig6918.15687.1|Name=mRNA_L-elsbetiae_contig6918.15687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1156bp|location=Sequence derived from alignment at L-elsbetiae_contig6918:502..1657+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTCAAGTGGTGTACCTGACCTCCCGGCCGATCGTCCTCGCGCCGAA AACCAGGACCTTCCTGATGGCCACGGAGCAAGAGGGGAAGAGGCTCCCCC TCGGCCCCCTCATCTGCTGCCTGGAGAAAGTCAGAGGGGTGCTCTGGCGT GAGGTGCGTGCGTGCGTGCGTGCGTGGTGCGTGCGTGCGTGTGTGTGTGT GTGTGTGTGTGTGTGTAAGTTATTCTGTCAAAAGTTGTAAATTTGGCCAT ACTTCTGTATATCTTTCTACGGCAGCTTCCGTCCATCGCCCGCTCCTGCC CTCTTTCCTGCCGCAGTCCCGTTGTCCGGCTTTTTGATCTGTTTCCATAT GCAACGTACAGATGTGCATCGAGTGTGCACACTCCCCCCCCGCCCCCGTC CAATCTCCTTAAAAGCCCTGACGTCGCCAACATATTTTTTTCAAGTTTTC CAGGGCTGTGATTGGATCATACTCACGGTCAGTCAGTCCCCTGTGGCGGA CGGACCTCAACTCTGAAATCCCTATCATCCGGCCCCCCAAACCCATCTGG GGCCATTTTTGATATTTAGTGATTCTAAAGCAGGAATTGGAGCCGCGTGG TAAAACGGGGTCGGAAAGCTTGGCGTTATCACTTGGGACCGAAAAGTAGC CCCAAAGGCCTTGTGGCCCTGAGGGGATTAACTATTCATCTTCCTGCCTG CCTGCCTGCCTGCCTGCCACACTTCAGTTTTTTTTTCGATTCGTGCTTCA ACGCGGCCGCTGAGATTGAATGCGTCCTGTTTAGCAGGTCCAGACCGCGC GTGTGACAGAGTAGAGAGTGACGGAGGAGAGACACTACGACTGCTGTGTT GCTGCGCTACTGAGAGAGCTACATCTTTGTGTACATTTTGCAGATGCACT TCGTATGTAATGCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCTTCCCA GCTGGTGGCAAAGGACATGCACGACTACAAGATCAAGGCGCTGCTGGACC TGGCGACGCCGTTCCGCGAGGCCGGGAGGGCCTTCGGCGAGGCGGTTTTC GCGGCGGGGATAGGCAACCGGCTCCACGACGCGGTGGCGTACAAGGCCGC CGGCATCCCCAAGGACTTCATCTTCTTGATCGACCCGGAGTCCAACCTCA GGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6918:502..1657+

>mRNA_L-elsbetiae_contig6918.15687.1 ID=mRNA_L-elsbetiae_contig6918.15687.1|Name=mRNA_L-elsbetiae_contig6918.15687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig6918:502..1657+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTCAAGTGGTGTACCTGACCTCCCGGCCGATCGTCCTCGCGCCGAA
AACCAGGACCTTCCTGATGGCCACGGAGCAAGAGGGGAAGAGGCTCCCCC
TCGGCCCCCTCATCTGCTGCCTGGAGAAAGTCAGAGGGGTGCTCTGGCGT
GAGGGGGCTCAAGTGGTGTACCTGACCTCCCGGCCGATCGTCCTCGCGCC
GAAAACCAGGACCTTCCTGATGGCCACGGAGCAAGAGGGGAAGAGGCTCC
CCCTCGGCCCCCTCATCTGCTGCCTGGAGAAAGTCAGAGGGGTGCTCTGG
CGTGAGCTGGTGGCAAAGGACATGCACGACTACAAGATCAAGGCGCTGCT
GGACCTGGCGACGCCGTTCCGCGAGGCCGGGAGGGCCTTCGGCGAGGCGG
TTTTCGCGGCGGGGATAGGCAACCGGCTCCACGACGCGGTGGCGTACAAG
GCCGCCGGCATCCCCAAGGACTTCATCTTCTTGATCGACCCGGAGTCCAA
CCTCAGGGCGCTGGTGGCAAAGGACATGCACGACTACAAGATCAAGGCGC
TGCTGGACCTGGCGACGCCGTTCCGCGAGGCCGGGAGGGCCTTCGGCGAG
GCGGTTTTCGCGGCGGGGATAGGCAACCGGCTCCACGACGCGGTGGCGTA
CAAGGCCGCCGGCATCCCCAAGGACTTCATCTTCTTGATCGACCCGGAGT
CCAACCTCAGGGCG
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