mRNA_L-elsbetiae_contig6908.15678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6908.15678.1
Unique NamemRNA_L-elsbetiae_contig6908.15678.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6908.15678.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.820e-59
Identity = 103/122 (84.43%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:  133 LLRQESSGLSAVTALLERLRVGMEEEAGVRTILQGIRGACAPPSAICDQLLQLLPLMSPPTALVEALPHFVGEDPADVSNVVKGYKELLEGDRSMLVHVIGSLHDLPLGPDARQDVSTMTLE 498
            +++QES+GLSAVTALLERLR+G+EEEAG RTILQGIRGACAPPS+ICDQLLQLLPL+SPPTALVEALP FVGEDP D++NVVK YK+LLEGDRSMLVHVIGSL+DLPLG D RQ+VSTMTLE
Sbjct:    1 MIKQESTGLSAVTALLERLRMGLEEEAGTRTILQGIRGACAPPSSICDQLLQLLPLVSPPTALVEALPQFVGEDPVDIANVVKEYKDLLEGDRSMLVHVIGSLYDLPLGADTRQEVSTMTLE 122
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BLAST of mRNA_L-elsbetiae_contig6908.15678.1 vs. uniprot
Match: A0A835Z3F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.060e-31
Identity = 71/140 (50.71%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:   79 EAVVRSATASDAVGLCTQLLRQESSGLSAVTALLERLRVGMEEEAGVRTILQGIRGACAPPSAICDQLLQLLPLMSPPTALVEALPHFVGEDPADVSNVVKGYKELLEGDRSMLVHVIGSLHDLPLGPDARQDVSTMTLE 498
            EAVV +  A+DA+ LC  LLR E+S L+A TAL+ER+R+G+E++AGV  I++ I     P SA+  Q+LQLLP++  P  L++ALP  V  + ADV  VV  Y++LL  DRS+LV ++GSLHDLPL   AR  V+ +TLE
Sbjct:    3 EAVVAAPCAADAIQLCRPLLRHEASALAAGTALMERIRLGLEDKAGVTLIMRAITMQSLPHSAMTAQVLQLLPMVECPQPLIDALPQLVCANTADVDLVVAEYRQLLTADRSLLVPIVGSLHDLPLRRAARAAVAALTLE 142
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6908.15678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G719_ECTSI3.820e-5984.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3F5_9STRA1.060e-3150.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6908contigL-elsbetiae_contig6908:4840..8942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.6e-51
Seed eggNOG ortholog2880.D7G719
Hectar predicted targeting categoryother localisation
EggNOG OGs2E5QG@1,2SCHA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size499
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6908.15678.1prot_L-elsbetiae_contig6908.15678.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6908 4841..8942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.813532-CDS-L-elsbetiae_contig6908:4840..49041622816765.813532-CDS-L-elsbetiae_contig6908:4840..4904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 4841..4904 -
1691683796.778181-CDS-L-elsbetiae_contig6908:4840..49041691683796.778181-CDS-L-elsbetiae_contig6908:4840..4904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 4841..4904 -
1622816765.8242936-CDS-L-elsbetiae_contig6908:5453..56081622816765.8242936-CDS-L-elsbetiae_contig6908:5453..5608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 5454..5608 -
1691683796.7893472-CDS-L-elsbetiae_contig6908:5453..56081691683796.7893472-CDS-L-elsbetiae_contig6908:5453..5608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 5454..5608 -
1622816765.8401875-CDS-L-elsbetiae_contig6908:6096..61711622816765.8401875-CDS-L-elsbetiae_contig6908:6096..6171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 6097..6171 -
1691683796.8019319-CDS-L-elsbetiae_contig6908:6096..61711691683796.8019319-CDS-L-elsbetiae_contig6908:6096..6171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 6097..6171 -
1622816765.8562179-CDS-L-elsbetiae_contig6908:6876..69401622816765.8562179-CDS-L-elsbetiae_contig6908:6876..6940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 6877..6940 -
1691683796.8124638-CDS-L-elsbetiae_contig6908:6876..69401691683796.8124638-CDS-L-elsbetiae_contig6908:6876..6940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 6877..6940 -
1622816765.868338-CDS-L-elsbetiae_contig6908:8802..89421622816765.868338-CDS-L-elsbetiae_contig6908:8802..8942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 8803..8942 -
1691683796.8241549-CDS-L-elsbetiae_contig6908:8802..89421691683796.8241549-CDS-L-elsbetiae_contig6908:8802..8942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6908 8803..8942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6908.15678.1

>prot_L-elsbetiae_contig6908.15678.1 ID=prot_L-elsbetiae_contig6908.15678.1|Name=mRNA_L-elsbetiae_contig6908.15678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
VSCCLLGWPGAPHRHGWPAMETDFVLEAVVRSATASDAVGLCTQLLRQES
SGLSAVTALLERLRVGMEEEAGVRTILQGIRGACAPPSAICDQLLQLLPL
MSPPTALVEALPHFVGEDPADVSNVVKGYKELLEGDRSMLVHVIGSLHDL
PLGPDARQDVSTMTLE
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mRNA from alignment at L-elsbetiae_contig6908:4840..8942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6908.15678.1 ID=mRNA_L-elsbetiae_contig6908.15678.1|Name=mRNA_L-elsbetiae_contig6908.15678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4103bp|location=Sequence derived from alignment at L-elsbetiae_contig6908:4840..8942- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCCTGCTGCCTTCTTGGTTGGCCTGGAGCTCCCCACCGGCACGGCTG
GCCAGCTATGGAGACTGACTTTGTCCTGGAGGCAGTAGTCAGGAGTGCGA
CGGCGAGCGATGCTGTCGGTCTGTGCACTCAGCTTTTGAGGTGACTATCT
ACGTATTCAACTGCCGCATTTCCCGCCCAAGAAGAACTGCAGATAAGCGA
CGGAGGAGAGAGGGAGAGGGACGGAGAGACAGAGAGATAGAGACAGAGTG
CAACAGACAGTCCATGCCGTTCGTAGCTTCGGTGCCGACCATGCAAGTTG
TCAAGGGGGGGTGGAACTTCCGTGTTCCGGGAGAGGTTGTCACAGCTAGT
CAGAGCAGGACGTTGATTGCCTCTGGCTCTCACGACGGCCTGCTGTCTCG
GCTCTACACGCAGGGTCACCGAGGCCACCGCACGCCAGTTGAATTCCAAA
GACCAACTTGAGAAGTCGCACACTCGCAGCACGCATGGAGTTGGTGTAAG
AGATCCCTTCAGTGGAGAGTAAGCAGTAAGCAGTGAGTTTCAAACGTCCG
CGGGACTGTCGTTTTTTGGTCAATCGCATAGTAGACTTCCGATCTCCGAC
AGGTGGGCCTCCATAGGTGGGCCTCAAGCTTTCGCAGGCGAGGAAAATAT
CGCCAGGCCATCGTCCCAGTATGAGATATTATGCTCCATGTTTGTCGCGA
CGCCAAATATCTTAAAGTCTGGTCTTTATTGCTACAACGACTGAACAACT
ACACCACACAGCTCCTACATCTACAGCAGTAGAGAGTAGTCTACCTACAT
AGATACATAGAAGGAACGCCCGTTGAGTTGTGTTCGGCCTTTCACACCTC
CTGGGGCAGACGAAGCACCCAGTAGCTTGGCTGTGCTATAGCGTCTTGTT
AAACGTTCATGGTTCTCCACTGTTTGAGGTGTATGATTTGTCTCTCGGCC
TCTGCTGTAATCCTCTGCAACTATGTAATCGTTGCAGCAGTGCCTCCTTA
CATGTACCAATTACTGTAGCAGAGAAGCACGTTCCATGCACGCTACAATA
CACACCCCGAGCGCCGTTTTAGGCAAGCAAGACACAAATTACGGTGGCTC
AAACAGATGTTCGCCCGCCTCAACCGACAGAGAACACCATCCCAACTTAG
AACATGTCTTCATTGTCGCTCTGTTGCCGAATTCCAGTGGCAGAAAACCA
GGGCGAATGTGTCACTGAGTAGGCACACACGTACGGCGACGGAGGTAAAT
GCGGCCGCGTCTATGCCGCTAAGAGAGTTTATGACATCAGTTTCAGAGGC
GTTCGGTCAAAGGATTTCCGACAAAACATTTCAATTTTGTTGTATGTAAG
GTTGGGGAGCAGGTGCTCTGGGCAATCGTGCGATACATTTCGCGTCCTCC
AAGCCTGGTTTTTACGGACCCGGCAGTCAACATCCTCCTGCTTTATACTA
GAGACTTACAAATGGTAGGATGTGTCAAAGCGTCATCCGCGCTGCCGCCT
TGCCCTGAATATTTCTTCGTCTGTTCAGCCGCGATCGTTGGATATACTAC
AAGCTGCAAGCGCCTTTTGATTGATCGTTGTTTCGATACATAGAGTTTTG
CTGGCTGCCGAAAGGTGAATGGTGACACAAATACGACAGCTGTACCCCCC
TGTTGGCGCATAATCTGTAACCGTTTTGAACAAGCCGGGTTTATAGCAGG
CGTAAACTCAGCGAGTACGTTGCACTGCGCGCATGCACTCGTGCCGGTTT
ACGACAGGCATCAAATGGGAAAGTTGGTGTGCACAGATATGTCCTGTGTG
TAGCTTTGCGTTCAGGCAGATAACCGATCTGTATCCCCGTCACGTCGCCC
CCATCGACAATCGACCCTCCGCTGCGTATGTAGGACCCTCCGCTGCATAT
GGAGACAAAATGCATGCCCTTGCGACCATTTCTCTTACCCTTCAAAACGA
TCTGGGACCGTTTTTTTTGCCTGTGCCCCCCCCTGTGTATGTGTGCTTGT
AGGCAGGAAAGCTCGGGACTGTCAGCTGTAACGGCGCTGCTCGAGCGACT
CAGGGTGGGGATGGAGGTGCGTCAGCCCGTGATGATGTGTTCCCAGCCTC
TCTGCTCTGCTCAGCTCCTTGCCAGAGCTTGAGCACGCGTACACCTCGAC
TGTGGTCGTGTTTTTTTGTGTTCGTGGATGCTTGCGCTCGCCAGGCCCGC
CCGCCCGTCCGCAGTTGGTTGGCGTTCCCGCCATCGTTCGTTGTCCTGCG
GGTATGTACACAGTTGTTGCAGAAGCGAGCATGTACGGCAGGGGGGCGGT
GTTGTTGTTCTTGCTTCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTATCTGCCAGT
GCTTCATGGGTATCCCCGACACAGCGCAACCACGTTTGGATACTTGGAAC
GTCGCATACAAACGCGTATGGTTTAAAGCTACAATATGTGGAAGCCCCCC
GTCCAATACACTACCTCTTTCTCTATGCTTCAAAATAGAGCATCGAGGGG
GGTTCTCATCGTCAACTATATAGGAGTACTTCCCAGCATCAGGCACCAAG
CCACGTAGACCAAACCACAGAGAGGCAGGCCACCTAAACCAGCACGGACA
ACGATCAAAAGCACAAGACGGTCTTTGGTCACGACCGTTTTTGCATTGGT
TCTTCTGTTTGTCGCCTTGTTCGTGTCACACGATTATGACATCATGATGC
GATGACACGACCCCCCCCCAGGAGGAGGCCGGCGTGCGTACCATTCTGCA
GGGGATCCGTGGGGCTTGCGCGCCGCCGTCGGCTATCTGCGACCAGGTCA
GAGGGGGGGGGAGGGGGCAGTAGTTCGTACCGGGAGTCATTCCACGTCCC
CCCCCCCCAATTTTCCTGCAATGTCGCCCATACTTTCCGCGTTCGGCGCT
GACACCCTTATTTGAGAAAGCACACGCGGCCGGGTTCCTCCACGGGGAGA
GCGTTTCTGCTTTGGCGAACACAAACTGAACACACCGTACCGGTGGGACT
ACTGCTGTTTGTTTGTGGACCGTCCACACACGGAGGGAGGTCGTCATTTT
CCCGTCGTTTTTTGCGAAGCAACATCTCTCTTAGAGAAAAAGCTCTGTAC
GGCGTTTGAGGAATTTGATCCGTCCTCGCCTTGCCGTCTTCTCCCCCCTT
TCGCCGGCTTTGAAGTATTTTCGTTCAAGGATCTAGGTTTGATTGATAAC
TGAGCCCCCCCCCCATTCACGCCGCATGTTCTCCTCTCGCATCGGCGTGC
ACCCACCTCTCGTCTATCTTTGCCTCTCGAACAGCTGCTGCAGCTGCTGC
CGCTCATGTCGCCTCCCACGGCCCTGGTGGAAGCTCTGCCACACTTCGTG
GGGGAGGACCCGGCGGACGTGAGCAACGTGGTGAAGGGGTACAAGGAGCT
TCTGGAGGGGGATCGCTCCATGCTCGTGCACGTGATCGGGTGAGTCACGT
CCGCGTCACCCCTCTAGAACCGATACTTTGTGTGATAGAGTGGGTGGGTT
TGGTTTAATGATGAAGCTTTTTCCTTAAACCAGTTACAAACGAAAACGAT
CAAAAAGTTATGTTATGCTCCTGGTAGGCTTCTTCATTTTATGTACTATA
GCCACGCCAGGGATTGGGGGTTGACTGCGGGGACTCTGCGTTCGCATGTG
TGGAGAGACTGACTGCTAGAGAGTGTTTTAAAACTAAACAATGAATCAAA
GATGGAACCTACCCCACACTAGAGCAAGGTCTCGATATGGGGTTCAAACG
GTATTCCATACAGAGACGTAATATTTGGCGAAGCGAGCAGAAAAACAACC
TAAAATATCAGAAGAGTTCAACATCTCCCCTGCAAAGTGTTTTTGGAGAT
AAGAAGATCGTAGGAGATCGAAGGCTGGCCTGCTTGTCTCGCCAGTTTTC
CCGATAACCAAACCTATGTAATGACCCCCCCCGCCCCCCTCCTTCTCTCT
TGATTTGTTTTTGTGGCGGGATTGTGTTGTCGCCCCAGCTCCCTGCACGA
CCTGCCCTTGGGCCCAGACGCGCGACAGGATGTGTCTACCATGACTCTCG
AGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6908:4840..8942-

>mRNA_L-elsbetiae_contig6908.15678.1 ID=mRNA_L-elsbetiae_contig6908.15678.1|Name=mRNA_L-elsbetiae_contig6908.15678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig6908:4840..8942- (Laminarionema elsbetiae ELsaHSoW15)
GTTTCCTGCTGCCTTCTTGGTTGGCCTGGAGCTCCCCACCGGCACGGCTG
GCCAGCTATGGAGACTGACTTTGTCCTGGAGGCAGTAGTCAGGAGTGCGA
CGGCGAGCGATGCTGTCGGTCTGTGCACTCAGCTTTTGAGGTTTCCTGCT
GCCTTCTTGGTTGGCCTGGAGCTCCCCACCGGCACGGCTGGCCAGCTATG
GAGACTGACTTTGTCCTGGAGGCAGTAGTCAGGAGTGCGACGGCGAGCGA
TGCTGTCGGTCTGTGCACTCAGCTTTTGAGGCAGGAAAGCTCGGGACTGT
CAGCTGTAACGGCGCTGCTCGAGCGACTCAGGGTGGGGATGGAGGCAGGA
AAGCTCGGGACTGTCAGCTGTAACGGCGCTGCTCGAGCGACTCAGGGTGG
GGATGGAGGAGGAGGCCGGCGTGCGTACCATTCTGCAGGGGATCCGTGGG
GCTTGCGCGCCGCCGTCGGCTATCTGCGACCAGGAGGAGGCCGGCGTGCG
TACCATTCTGCAGGGGATCCGTGGGGCTTGCGCGCCGCCGTCGGCTATCT
GCGACCAGCTGCTGCAGCTGCTGCCGCTCATGTCGCCTCCCACGGCCCTG
GTGGAAGCTCTGCCACACTTCGTGGGGGAGGACCCGGCGGACGTGAGCAA
CGTGGTGAAGGGGTACAAGGAGCTTCTGGAGGGGGATCGCTCCATGCTCG
TGCACGTGATCGGCTGCTGCAGCTGCTGCCGCTCATGTCGCCTCCCACGG
CCCTGGTGGAAGCTCTGCCACACTTCGTGGGGGAGGACCCGGCGGACGTG
AGCAACGTGGTGAAGGGGTACAAGGAGCTTCTGGAGGGGGATCGCTCCAT
GCTCGTGCACGTGATCGGCTCCCTGCACGACCTGCCCTTGGGCCCAGACG
CGCGACAGGATGTGTCTACCATGACTCTCGAGCTCCCTGCACGACCTGCC
CTTGGGCCCAGACGCGCGACAGGATGTGTCTACCATGACTCTCGAG
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