mRNA_L-elsbetiae_contig6906.15677.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6906.15677.1
Unique NamemRNA_L-elsbetiae_contig6906.15677.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6906.15677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6906contigL-elsbetiae_contig6906:8004..9748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size510
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6906.15677.1prot_L-elsbetiae_contig6906.15677.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6906 9404..9748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.7116055-UTR-L-elsbetiae_contig6906:8003..81051622816765.7116055-UTR-L-elsbetiae_contig6906:8003..8105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6906 8004..8105 +
1691683796.7297049-UTR-L-elsbetiae_contig6906:8003..81051691683796.7297049-UTR-L-elsbetiae_contig6906:8003..8105Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6906 8004..8105 +
1622816765.7266319-UTR-L-elsbetiae_contig6906:9342..94031622816765.7266319-UTR-L-elsbetiae_contig6906:9342..9403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6906 9343..9403 +
1691683796.740567-UTR-L-elsbetiae_contig6906:9342..94031691683796.740567-UTR-L-elsbetiae_contig6906:9342..9403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6906 9343..9403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.741695-CDS-L-elsbetiae_contig6906:9403..97481622816765.741695-CDS-L-elsbetiae_contig6906:9403..9748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6906 9404..9748 +
1691683796.7516496-CDS-L-elsbetiae_contig6906:9403..97481691683796.7516496-CDS-L-elsbetiae_contig6906:9403..9748Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6906 9404..9748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6906.15677.1

>prot_L-elsbetiae_contig6906.15677.1 ID=prot_L-elsbetiae_contig6906.15677.1|Name=mRNA_L-elsbetiae_contig6906.15677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MVMRQRPRRRCCRATWLAAAAMALVAASISTAPAAARINGAGFGAATAAT
GRPARGLSSGAIIGSSGSSSSTITIDSSSSSSSSSPSSSETLVCPGTPSL
ANNQQCDDINNNEYC
back to top

mRNA from alignment at L-elsbetiae_contig6906:8004..9748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6906.15677.1 ID=mRNA_L-elsbetiae_contig6906.15677.1|Name=mRNA_L-elsbetiae_contig6906.15677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1745bp|location=Sequence derived from alignment at L-elsbetiae_contig6906:8004..9748+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGGGGCGCTTTGTGCACCGGATGACGCCCAGACGGTGACAGCAGTAAC
GACAGCACAAGTTTCGAACCCGATAGCCGGTCAGCCGTGGGTGACAGCGG
CGGTGAGTGTGAAAGAAAAAACAGAGTATCTCAAATGTATAGAAACGTGT
GTACATCATACATAAAATCTTCAACAAGGCTTGCGTATTTGCACAGCCCC
TGTACAGCGTCAGCGAACACAGCAGCGGTAGCAGAGGCGCTGTATTGCAT
CTACAACTGTAGTCTACAGCGAGCGGTCTTCGCGTGAGGAGAAATCTTGG
ATAGGTCCTCGATCTTACATACAGCAGCAGTGGGTGTATCGAAGGGGACC
TCCTGTTTCTCTGGAGTGCGCGTGCACGCGCGTGCGTGGCTTATCTACAT
ACTCTGTGGTTGCACCCGGTGCCTAATTATTCCACGATTCCATGGCCTTG
AGGTAGCACTACTTACACACGGATGGAACCTCGTGTGTGACTGGTCGAGA
CACTTATTTGAGGCACTACGTTACATGGTCTAGACTACTGCTGTAGAGTC
TATCTTGCGTACGTTCTAGAAGTTGTTGTAGACATGGCACTCTGAGTGCG
CTGCGTTGTTTCGCTCGATCATTCACCGATGCCAGGCACGCCCGCGCACA
ACAGCTCCATTTGAAACGTTGTCCGCAGACTAAGAACGGTCGAATTGTGC
ACCCGCTGCCCGTTCTATGAACACCATATTTGAGCTCCTCTGTTGTGCAG
TAGCTGCCTTTGACACTGTGCGTACATATACCTATATAGTCTAAAACGTT
TCATCCAGCACGTACACGCAGGAACACAGCAGTGTAGACTCTGTTTCTTC
CCGCATGACGAGTTTTTAGAGAAATCAAATACAGATATGGGCACCAACAC
CTGACCCCCAGAGCGGAATGTAGTAGTATGTATGTTGCCACTGCGTGTGC
CCACCTCATTCCATCGAAAAGTAGGAGATAAAGCTCGGCTCTTGGCTTCC
ATGTTACAAGCGAAAGTTGCCAGCAGACTAAATAAATATGTCTAGAGACA
CGATGGATCAACCGAAACAACCACGTGTGATGATGGACCAAACCACACCA
ATCAAAGACCCCATCTACCTGTACCTTTGACGTGACGAATCTTGGCAGAT
TTTGAGAGCACAGCGCTACATACTGCAGCAATAGATACAGCAGCAGTGCC
ATACATATTTGTTCGCATATCGAAATCGTAGAGGTACGTGCCTACATAGC
CCGTCGACCCGCGAGTACATTTAGACCTTTCTTTGCTCAGGTTCCTTGTA
TCTTGTATGTATGTGCTTAACTCTCCTTTTTTCAAAAAGGTGCTACAATA
CCGATAAGAAGGGGAGCCGAAGGGTGCGCATATTGCAGGAGTCGTCAGCG
ATGGTGATGCGACAGCGACCAAGACGGCGGTGTTGCCGAGCTACCTGGCT
GGCCGCTGCTGCTATGGCGCTCGTTGCGGCCAGCATCTCTACTGCTCCTG
CTGCGGCTAGAATTAACGGGGCCGGCTTCGGGGCTGCGACAGCAGCGACT
GGCAGGCCCGCTCGCGGGTTATCCTCCGGCGCCATCATCGGCAGCAGCGG
CAGCAGCAGCAGCACCATCACCATCGACAGCAGCAGCAGCAGCAGCAGCT
CTAGCCCTTCTTCCTCGGAGACGTTGGTGTGCCCGGGGACGCCTTCCCTG
GCCAACAACCAACAGTGTGACGACATCAACAACAACGAATATTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6906:8004..9748+

>mRNA_L-elsbetiae_contig6906.15677.1 ID=mRNA_L-elsbetiae_contig6906.15677.1|Name=mRNA_L-elsbetiae_contig6906.15677.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig6906:8004..9748+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGATGCGACAGCGACCAAGACGGCGGTGTTGCCGAGCTACCTGGCT
GGCCGCTGCTGCTATGGCGCTCGTTGCGGCCAGCATCTCTACTGCTCCTG
CTGCGGCTAGAATTAACGGGGCCGGCTTCGGGGCTGCGACAGCAGCGACT
GGCAGGCCCGCTCGCGGGTTATCCTCCGGCGCCATCATCGGCAGCAGCGG
CAGCAGCAGCAGCACCATCACCATCGACAGCAGCAGCAGCAGCAGCAGCT
CTAGCCCTTCTTCCTCGGAGACGTTGGTGTGCCCGGGGACGCCTTCCCTG
GCCAACAACCAACAGTGTGACGACATCAACAACAACGAATATTGCATGGT
GATGCGACAGCGACCAAGACGGCGGTGTTGCCGAGCTACCTGGCTGGCCG
CTGCTGCTATGGCGCTCGTTGCGGCCAGCATCTCTACTGCTCCTGCTGCG
GCTAGAATTAACGGGGCCGGCTTCGGGGCTGCGACAGCAGCGACTGGCAG
GCCCGCTCGCGGGTTATCCTCCGGCGCCATCATCGGCAGCAGCGGCAGCA
GCAGCAGCACCATCACCATCGACAGCAGCAGCAGCAGCAGCAGCTCTAGC
CCTTCTTCCTCGGAGACGTTGGTGTGCCCGGGGACGCCTTCCCTGGCCAA
CAACCAACAGTGTGACGACATCAACAACAACGAATATTGC
back to top