mRNA_L-elsbetiae_contig6905.15675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6905.15675.1
Unique NamemRNA_L-elsbetiae_contig6905.15675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: A0A6H5JID1_9PHAE (ELMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID1_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 2.440e-105
Identity = 180/306 (58.82%), Postives = 216/306 (70.59%), Query Frame = 2 
Query:  311 ASGTRKLLRSLERAFMRAWKALMRRVTGRSEMSRILKRYEGYSSDLVQAIARSIASSSE------KDAVFRTKVLDVAALSARLADKKEISDEDRPRLMWCLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRTADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIKQRSNSRFPRLVQED 1210
            A  +R+ +R+  R   R  K L+R++T +SE+ RIL R +G+SS+LVQ IA+SI  SS       K AV      DV +    L   K I DE +PRL WCL++  IVN + EK   LQ T +D      +A LE LW+SLQP  RRT DGW  LGFQNG++PETDFRGMGLLGL QL+FF+E+RN EA  ILADS NPKRYFPFAAAGIN+TAFT TMLEQRRLD  LY+AIVKH+  G +P D +MLV+AG   FN +YGDEYVEFSRFWH S P+ STMAFPGIFG IKQRSN+R+P LV  D
Sbjct:    4 AKKSRRAVRAFTRLMRRIVKWLLRKLTAQSEIGRIL-RSDGHSSELVQVIAQSIGRSSSTEMERVKRAVLGKAPFDVTSTCDELMAAKAIGDEHKPRLTWCLQVLNIVNIIHEKVESLQHTNYDPDDATHVALLETLWTSLQPDARRT-DGWAPLGFQNGDKPETDFRGMGLLGLHQLVFFAEARNREALCILADSINPKRYFPFAAAGINITAFTTTMLEQRRLDTSLYEAIVKHMPAGTLPVDEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPD-STMAFPGIFGTIKQRSNARYPPLVDAD 306
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: D7FIA1_ECTSI (Similar to ELMO domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA1_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.050e-38
Identity = 88/170 (51.76%), Postives = 109/170 (64.12%), Query Frame = 2 
Query:  323 RKLLRSLERAFMRAWKALMRRVTGRSEMSRILKRYEGYSSDLVQAIARSIASSSE------KDAVFRTKVLDVAALSARLADKKEISDEDRPRLMWCLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRTADGWGALGFQNGERPETDFRGMGLLG 814
            RK +R+  R   R  K L+R++T +SE+ RIL R +GYSS+LVQAIA+SIA SS       K AVF     DV +    L   K I DE +PRL WCL++  IVN + EK   LQ T +D      +A LE LW+SLQP  RRT +GW  LGFQNG++PETDFRGMGLLG
Sbjct:    8 RKAVRAFTRLMRRIVKWLLRKLTAQSEIGRIL-RSDGYSSELVQAIAQSIARSSSSEMERVKRAVFGKAPFDVTSTCDELMAAKAIGDEHKPRLTWCLQVLNIVNIIHEKVESLQHTNYDPDEPTHVALLETLWTSLQPDARRT-NGWAPLGFQNGDKPETDFRGMGLLG 175
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: D7FIA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA0_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.800e-32
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 2 
Query:  947 MLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIKQRSNSRFPRLVQED 1210
            MLEQRRLD  LY+A+VKH+  G +P D +MLV+AG   FN +YGDEYVEFSRFWH S P+ STMAFPGIFG IKQRSN+RFP LV  D
Sbjct:    1 MLEQRRLDTSLYEAVVKHMPEGTLPVDEEMLVAAGLTGFNHVYGDEYVEFSRFWHESEPD-STMAFPGIFGTIKQRSNARFPPLVDAD 87
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: F0WBU8_9STRA (Uncharacterized protein AlNc14C53G4139 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBU8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.500e-30
Identity = 95/298 (31.88%), Postives = 153/298 (51.34%), Query Frame = 2 
Query:  314 SGTRKLLRSLERAFMRAWKALMRRVTGRSEMSRILKRYEGYSSDLVQAIARSIASSSEK-----DAVFRTKVLDVAALSARLADKKEISDEDRPRLMWCLEIF----GIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRT----ADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIK 1168
            S   K +  ++R +    +   R + G SE+ R+ ++ +     +  A  RS  + SE      D +F  K L V  +S  +A    I D++  RLM  L  +      VN V +K   L+  P+ + ++     LE LW++L+P  RR        W  +GFQ G  P TDFRGMG+L LVQLL+F+     EA+ +L +S +P  ++PF+  GINVTAF   ++++R +D+ +Y    ++       +D   ++  G  A +  Y D +  F++ W  SNPE++ MAFP IF  +K
Sbjct:    8 SNAAKQMTFIDRFWRYLHEQFWRWILGESELQRLARKCDVLDLSVQMARFRSCLALSEHLTAQCDQIFDLKTLKVDQVSEEIAVADGI-DKNNIRLMQTLRGWLHRCDYVNSVYQKLLALRDEPYASHNKVHERMLEELWTNLKPQTRRAHGRITKEWSEIGFQ-GMDPMTDFRGMGVLSLVQLLYFTSKYPVEAQALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDIKIY----QYADISDPSRD---VMDNGLDAIHEFYCDVFTSFNKLWKESNPEDA-MAFPSIFQALK 295
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: A0A024G872_9STRA (ELMO domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G872_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.040e-30
Identity = 93/298 (31.21%), Postives = 152/298 (51.01%), Query Frame = 2 
Query:  314 SGTRKLLRSLERAFMRAWKALMRRVTGRSEMSRILKRYEGYSSDLVQAIARSIASSSEK-----DAVFRTKVLDVAALSARLADKKEISDEDRPRLMWCLEIF----GIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRT----ADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIK 1168
            S   K L  ++R +    K + + + G+SE+ R+ ++ E    ++  A  RS  + S+      D VF  +  +V  +   +A    I   D  RLM  L  +      VN V +K   L+   + + ++     LE LW++L+P  RR        WG +GFQ G  P TDFRGMG+L L+QLL+F+     EA  +L +S +P  ++PF+  GINVTAF   ++++R +DM +Y    ++ +T    +     +  G  A +  Y D +  F++ W  SNPE++ MAFP +F  +K
Sbjct:    8 SNVAKQLSLIDRLWRYLHKQVCKWIFGQSELQRLARKCESLDLNVQMARFRSCLALSKHLMAQCDRVFDPRTFEVEQVCEEIAVADGIDTNDI-RLMQTLRGWLHRCNYVNAVYQKLFSLRDESYTSQNEMHERMLEELWTNLKPQTRRAHGRITKEWGEIGFQ-GVDPMTDFRGMGILSLIQLLYFTSKYPVEASALLTESNHPTHWYPFSVTGINVTAFVIELVQERLVDMKIY----QYAETSDPSKHG---IDNGLDAMHEFYCDVFTSFNKLWKESNPEDA-MAFPSVFQTLK 295
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: K3X4G9_GLOUD (ELMO domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4G9_GLOUD)

HSP 1 Score: 125 bits (314), Expect = 5.220e-27
Identity = 72/197 (36.55%), Postives = 108/197 (54.82%), Query Frame = 2 
Query:  593 CLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRTADG----WGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIKQ 1171
            CL+    VNRV  +   L+   FD+ + +    LE LWS+L+P+VRR+       WG +GFQ G  P +DFRGMG+  L QLL F+ +   EA+  LA+S +P R++PF+  GIN+T+F   ++ +R +D  LY        T     + D     G  A + +Y   +  F++ W  SNP +  MAFP IF  +K+
Sbjct:  111 CLDRCNYVNRVYNRVHALRDEAFDSKNAKHEEMLEQLWSNLKPNVRRSGGRITKEWGEIGFQ-GTDPMSDFRGMGIFSLYQLLHFTGNYPVEAQAALAESNHPTRWYPFSVTGINITSFIIELINERLVDFKLYKFANLQRGTNDSSNEDD-----GLEALHELYSTIFTRFNKLWVDSNPRD-VMAFPTIFNALKK 300
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BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: A0A0P1ACK8_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACK8_PLAHL)

HSP 1 Score: 129 bits (323), Expect = 6.200e-27
Identity = 74/196 (37.76%), Postives = 109/196 (55.61%), Query Frame = 2 
Query:  593 CLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRTADG----WGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIK 1168
            CL+    VNR+ ++   L+   + + + E    LE LWS+L+P VRR        WG +GFQ G  P +DFRGMG+L LVQL  F+++   E+++ L +S +P R++PFA  GINVTAF   +++ R LD+ +Y      + TG      D  V AG    +  Y   +  F++ W  SNP +  MAFP IF  +K
Sbjct:  111 CLQRCNFVNRIYDQVYALKNEAYSSSNSEHEELLEQLWSNLKPDVRRLGGRITKEWGEIGFQ-GTDPMSDFRGMGILSLVQLNHFTKTYKIESQRALEESNHPTRWYPFAVTGINVTAFVVELIDNRLLDVEIY-----RLSTG----GEDDNVDAGIQQLHDFYATTFTRFNKLWVDSNPRD-VMAFPSIFQSLK 295
[Close]
BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: A0A482SNR3_9ARCH (ELMO domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNR3_9ARCH)

HSP 1 Score: 121 bits (304), Expect = 1.040e-26
Identity = 94/302 (31.13%), Postives = 151/302 (50.00%), Query Frame = 2 
Query:  365 WKALMRRVTGRSEMSRILKRYEG-YSSDLVQAIARSIASSSE----KDAVFRTKVLDVAALSARLADKKEISDEDR---PRLMWCLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRR-----TADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTA----------FTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDM-LVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIKQRSNSRFPRL 1198
            WK ++   TG+ E+ RI    +  +S+ + +  ARS+  S +       VFR + + + + +  +   K IS E+      +  CL+   ++N  I+    L+ T +     E +A LE LW +L+P V R     TA+ WG +GFQ G  P TDFRGMGLLGL+QL++FSE     A  +L+ S    +YFP+AA GINVTA          F   +LE+        D I+ H  +  + ++ D   + A     ++ Y   ++   + W  SN ++  MAFP +F   K+   + +P+L
Sbjct:   18 WKYVVHLWTGKCEIQRICGNKDRMHSASMTEEFARSLKKSRQLVKYSKIVFRWEAVPIHSFTTGIMQAKGISIENSLLLANIRTCLQHVHMINMAIQHLQKLKSTIYSDNDPEHVALLESLWRNLKPHVTRQGGRITAE-WGEVGFQ-GRDPATDFRGMGLLGLIQLVYFSEKMPELAISLLSQSQYDHQYFPYAATGINVTAVVVDMTLLGCFHHNILEE-------IDKIILHDSSQNIEREVDQKTIQAILNIIHAKYCVLFLRLGKTWLDSNSKD-LMAFPKVFKGFKEDVLALYPKL 309
[Close]
BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: A0A8J5J2E0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2E0_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.210e-26
Identity = 71/196 (36.22%), Postives = 106/196 (54.08%), Query Frame = 2 
Query:  593 CLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVRRTADG----WGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIK 1168
            CL+    VN+V  +   L+   + +   E    LE LW++L+P VRR        WG +GFQ G  P +DFRGMGL  LVQL+ F++    EA++ L +S +P R++PFA  GINVTAF   ++++R LD+ LY    +H             V +G    + +Y   +  F++ W  +NP +  MAFP IF  +K
Sbjct:  111 CLQRCNFVNKVYARVYALKNEAYSSSKPEHEELLEQLWTNLKPDVRREGGRITKEWGEIGFQ-GTDPMSDFRGMGLFSLVQLIHFAKGYKIEAQRALEESNHPTRWYPFAVTGINVTAFMIELIDERLLDIKLY----RHAANDD--------VDSGLKQLHDVYATIFTRFNKLWVDTNPRD-VMAFPSIFQSLK 292
[Close]
BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Match: UPI0003520C46 (ELMO domain-containing protein, variant n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0003520C46)

HSP 1 Score: 118 bits (295), Expect = 1.480e-25
Identity = 76/200 (38.00%), Postives = 107/200 (53.50%), Query Frame = 2 
Query:  581 RLMWCLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVR---RTADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADSTNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQ-DRDMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIK 1168
            +L  CLE+   +  + E+   LQ TP+D+  +   AQL  LW  + P  +   R ++ W  LGFQ G  P TDFRGMG+LGL QLLFF++  N +AR  L  S +P+R F +A  GIN+++     L+  +L   LY     H+     P+  +D LV+     FN  Y   + EFSR W   NPEN  +AF  I   +K
Sbjct:   86 QLRRCLEMISDLGTLFERVTELQDTPYDSSQESNEAQLVELWELMMPEQQLSARVSNDWKTLGFQ-GRDPATDFRGMGMLGLKQLLFFAQQHNTQARGALTVSCHPERGFSYAIVGINLSSMAVEFLDNPKLHELLY-----HLSN--QPECSKDSLVN-----FNDFYCFLFCEFSRLWRQVNPENM-LAFNQIRDSLK 271
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6905.15675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JID1_9PHAE2.440e-10558.82ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIA1_ECTSI7.050e-3851.76Similar to ELMO domain-containing protein 1 n=1 Ta... [more]
D7FIA0_ECTSI3.800e-3269.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0WBU8_9STRA1.500e-3031.88Uncharacterized protein AlNc14C53G4139 n=1 Tax=Alb... [more]
A0A024G872_9STRA2.040e-3031.21ELMO domain-containing protein n=1 Tax=Albugo cand... [more]
K3X4G9_GLOUD5.220e-2736.55ELMO domain-containing protein n=1 Tax=Globisporan... [more]
A0A0P1ACK8_PLAHL6.200e-2737.76Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A482SNR3_9ARCH1.040e-2631.13ELMO domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A8J5J2E0_9STRA1.210e-2636.22Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
UPI0003520C461.480e-2538.00ELMO domain-containing protein, variant n=1 Tax=Ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6905contigL-elsbetiae_contig6905:3003..9914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue4.2e-34
Seed eggNOG ortholog2880.D7FIA1
Preferred nameELMOD1
KEGG koko:K14821
Hectar predicted targeting categorymitochondrion
GOsGO:0000278,GO:0000281,GO:0000910,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007049,GO:0008047,GO:0008150,GO:0009987,GO:0022402,GO:0022603,GO:0030234,GO:0030695,GO:0031347,GO:0031974,GO:0031981,GO:0032101,GO:0032991,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043547,GO:0043900,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048583,GO:0050688,GO:0050789,GO:0050790,GO:0050793,GO:0051239,GO:0051301,GO:0051336,GO:0051345,GO:0060589,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0080134,GO:0090175,GO:0098772,GO:1903047,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.ELMO domain-containing protein
EggNOG OGsKOG2998@1,KOG2998@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Ec32 ortholog descriptionsimilar to ELMO domain-containing protein 1
Ec32 orthologEc-11_001130.1
Exons5
Model size2260
Cds size933
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.578739-UTR-L-elsbetiae_contig6905:3002..32821622816765.578739-UTR-L-elsbetiae_contig6905:3002..3282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6905 3003..3282 +
1691683796.647998-UTR-L-elsbetiae_contig6905:3002..32821691683796.647998-UTR-L-elsbetiae_contig6905:3002..3282Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6905 3003..3282 +
1622816765.6685493-UTR-L-elsbetiae_contig6905:8867..99141622816765.6685493-UTR-L-elsbetiae_contig6905:8867..9914Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6905 8868..9914 +
1691683796.7176917-UTR-L-elsbetiae_contig6905:8867..99141691683796.7176917-UTR-L-elsbetiae_contig6905:8867..9914Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6905 8868..9914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.590361-CDS-L-elsbetiae_contig6905:3282..36031622816765.590361-CDS-L-elsbetiae_contig6905:3282..3603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 3283..3603 +
1691683796.6599777-CDS-L-elsbetiae_contig6905:3282..36031691683796.6599777-CDS-L-elsbetiae_contig6905:3282..3603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 3283..3603 +
1622816765.6022463-CDS-L-elsbetiae_contig6905:6551..67621622816765.6022463-CDS-L-elsbetiae_contig6905:6551..6762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 6552..6762 +
1691683796.6690297-CDS-L-elsbetiae_contig6905:6551..67621691683796.6690297-CDS-L-elsbetiae_contig6905:6551..6762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 6552..6762 +
1622816765.6260548-CDS-L-elsbetiae_contig6905:7376..74811622816765.6260548-CDS-L-elsbetiae_contig6905:7376..7481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 7377..7481 +
1691683796.678174-CDS-L-elsbetiae_contig6905:7376..74811691683796.678174-CDS-L-elsbetiae_contig6905:7376..7481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 7377..7481 +
1622816765.6397436-CDS-L-elsbetiae_contig6905:8436..85951622816765.6397436-CDS-L-elsbetiae_contig6905:8436..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 8437..8595 +
1691683796.6883066-CDS-L-elsbetiae_contig6905:8436..85951691683796.6883066-CDS-L-elsbetiae_contig6905:8436..8595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 8437..8595 +
1622816765.6515346-CDS-L-elsbetiae_contig6905:8730..88671622816765.6515346-CDS-L-elsbetiae_contig6905:8730..8867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 8731..8867 +
1691683796.7031112-CDS-L-elsbetiae_contig6905:8730..88671691683796.7031112-CDS-L-elsbetiae_contig6905:8730..8867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6905 8731..8867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6905.15675.1prot_L-elsbetiae_contig6905.15675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6905 3283..8867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6905.15675.1

>prot_L-elsbetiae_contig6905.15675.1 ID=prot_L-elsbetiae_contig6905.15675.1|Name=mRNA_L-elsbetiae_contig6905.15675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=311bp
MANPFQTVVPASGTRKLLRSLERAFMRAWKALMRRVTGRSEMSRILKRYE
GYSSDLVQAIARSIASSSEKDAVFRTKVLDVAALSARLADKKEISDEDRP
RLMWCLEIFGIVNRVIEKAGVLQRTPFDTGSQEQIAQLEGLWSSLQPSVR
RTADGWGALGFQNGERPETDFRGMGLLGLVQLLFFSESRNAEARQILADS
TNPKRYFPFAAAGINVTAFTQTMLEQRRLDMCLYDAIVKHVKTGKMPQDR
DMLVSAGFAAFNSIYGDEYVEFSRFWHASNPENSTMAFPGIFGMIKQRSN
SRFPRLVQED*
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mRNA from alignment at L-elsbetiae_contig6905:3003..9914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6905.15675.1 ID=mRNA_L-elsbetiae_contig6905.15675.1|Name=mRNA_L-elsbetiae_contig6905.15675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6912bp|location=Sequence derived from alignment at L-elsbetiae_contig6905:3003..9914+ (Laminarionema elsbetiae ELsaHSoW15)
CCATATCTAGAAGTAAGCGGCCAAAGGGTTGAGCCGGGGGGTCGGACTCT
TTCCTCTTATGTATAGAGTCATATACCATTAGTAGGGTCGGACATCGGAA
AACAAATGGCGGAGAGAGGCACGCAGCACGGGTGGCGTCCATATTTGTTT
TGCATCGGAACTGTTCTTTTGTTCTGCGGGGAAAGACAGGGATATTAGGC
GTGAACTGGAGAGAGTCCCTGTTGCGCTCGCTGGCGTGTTGGCGGAGCAA
AGAGCCGGCGCCGCTTTTACTTGGGTAGTTATGGCGAACCCGTTTCAAAC
AGTAGTGCCCGCATCTGGTACTCGAAAACTGCTCCGCTCTCTCGAACGAG
CTTTCATGCGAGCTTGGAAAGCGTTGATGCGGCGGGTGACGGGTCGGTCA
GAGATGAGTCGGATACTCAAAAGGTATGAAGGATACTCTAGCGACCTAGT
CCAAGCTATCGCGAGATCAATTGCTAGCAGCTCGGAGAAAGATGCTGTGT
TCCGCACGAAGGTGTTGGACGTCGCTGCGCTCTCCGCACGGCTCGCGGAC
AAGAAAGAAATCTCCGATGAAGACAGGCCCCGGTTGATGTGGTGCTTAGA
GGTGAGAGACGCCATGATGTTAGAGGTGGATGTAGGGGTGGCTTTATGTT
TGCTCTAGCCGGGTCGGCCGGGTGTTGATCGGAACACCAAATCAATTGTT
TATCTCCACTCGCGCGTCGCATGGGCAGGTCTTTGGGGGTTACATCCAGC
TGGTTACATCAGGTTACAGAGGTTTTGGCCGCTCATACGCGGTCCCGATT
TATTGAAAGCGCTTCCAAGGCAATAAACCTCCTGTGAAGTGCTGATGTGT
CGAAAAGTTGTACAACAGTAGTACTAGTAGAATGTAGTGTGGCGGATCAA
AACCATCAAAAAACACATGACGGCAGTTCGAGTTGCTGGTATTTCTAACA
AGCGTGTACGACACGTAGTAGTGTGGCTTAGATCACTAGCGGAAATGCCG
ATGTTGTACAATACAAGCTGTATCAAAATCTCCGTCACGATAACGATTTC
GACCTGAGATACATACAAAGATAAATAGCTGCATTGTGCCGCTACAGAGT
ATTCACACGTGTTGCCCCTCCCACAAAAAAGAGTATTCACACGTGTTGCC
CCTCCCACAAAAAGACGACTATATTTAATTTTTGGTCCTCAAAATACGAT
CCCACGCAGCCCTCCAATGTTTAGAGCGGGTCTTAACGAAAAAATTGTCA
GCCAATTTGGAAAGCAAATTGAAAACGAATTTGGGGCTCGAATCTGGACA
ATCAGCGCCCCCGCGCAAGGAGCGAAAACGATTCCCGCGGATATCCCCTG
GGGGCCGCCGATGGACAGGTTGACTGAAAGTTCACAGGCAGCTCATATGC
CACAGGGTAGCTAGAAAAATATCACAACAAGTCACAAGGTCAAGTCTGAA
CAAGAGGTCCTCATGGTCCAAACCTCATCCTCAAACGTTAGCTAGAACTG
GTGTTTGGGTTGTCGAGATGCAACGACACCACCGCGTTGGCATCAATTTT
TCGAAAACAACAGTCGTGCACAGAACAGAGAGCCTGCTTTTTTTACACGC
GCACAGGCCTGTCACAATACAGCTATCCCCAAACCACTGGTACCAGGCGA
TCGGTATGGAAGCGTGGAAACGGGAAAACGTGCCAGCACGGGGGCCCGCA
TGTACGTGTCGTGGGTCAATCCAATTCGTTCGTCGGATCATGGAAAATCA
ACCCTCTCGGAAGTTGATTTTTGGAGAGGCAAAAGCTAGGCCCGTGGCAT
GCAAAAGTGCCCCCCTCTCAGCCCCGTGGATGTTTTTTTGGGCTTGACCA
ATCACAAGCAAATTCGTTTTCAATTTGATTTCCAAATTGGATGACAATTT
TTTCGTTAAGACGCGCCCTTATGGGAGGACTGCCTTCGCGAGAAAAAACG
GGGAATATTGGTTTATATGTGAAATAGAGGAGTAGGGGTTCCGTAACTCT
AACCCTAACCCTAACCACGGACCCCCCAAACATTCCCCGATTCCACATTG
TACCTTATCCCATATGTTTCGCCGACCAAAAACCTGCGTAGACTACCGGA
TTTATGTAACACCGGACAGCGCACGTATTTCTTGTTTCACCAAAGCTTCT
GCGGTAGGGTTGATCCAAAAATAGCCAGCCAATACGTGGTTCCAATACCC
ATCACCAACACGGGCCAAAGTGGCAGGTCGATTGGACAAACACAGAGCCC
GACGCTCCCGTCTAAGGTGTGCTCGATCGGACGCGGCGAAGGAGCGTTTT
CAGATAATATTGGAGGCAGACAAGCGAGCGTTCTTTTCCCTATCTTGATC
AGAGAGGCAGAGTCGGTTTGAGCGCCCTAGAGTTGATCCAAAAATAGCCA
GCCCAGTGCCCCTTCTATGCTCACATATCTCTACGGTCACCGAGTTTCAA
GCGATTTTGGTGCTCTCCTGAGGCTCACGATTGAAATTGCCTCCCAAACC
GCGAGTTTGAGCTGAAAAAAACAGCAACTGCTCTCTAGCACCCGTCACTC
AGCAGCTCTCCTTTTCTACAAAAATAAAGACTCCTTGCAAACGCAGGGAA
TGGGTATCCTGAGATCTCCTGAGCTTTTCTTTGCAATCGGTTGTGTATTG
GGTTGTGTATGTGGGGAGCGTCCGCAGTCCCGAAGTACACAACCACGGAG
GTTCAGAGCAAACAGATCAGGAAGCGGACGCGAACACTAGAATTCCGCCC
AACTCGAATGCCTCGCATTTTGAAGGTAGTTTTTTTTTTGTGTGAGAGGG
TGCAACACGTGTGTATTGTGAGGACGGAAGCCTGGTATTATAGCGGTATT
GGGAGGTATTTCGGTATTCACACCCCCAATAGCGGCAGTTCCAAATTCGG
GGCCCCCAGTACCCCTTCTTTACAGCAGTTCGTCTGCATCGCACACACAC
CAGTGGGCGCCACCCGTATCATGCCAGCATGCGCGGACCAGGAGCTGTGT
AAAATTTCAGGCCGTCCTCTGGGAGAGACGGGTGGGCATGCCTCGCATGG
TACACGTTCGGCTCGCGCATTTGACCCCTTAACGCGTTCACCATTCGGCG
AATAACAGGGGAGTTTCAAGCGAGTCAACTTTCCAAAGAATTTATGTATG
TATGTAGAGGAGTTGAGCCTGACAGACAGACAAACAGAGACATAGACGGA
AAGAGAGCTATACAGTGGGAAAGTGACGGATGTGTGAGCAAAACAGCCCT
CCTTGTGTTTGACAGCGCTGCCGCGAGTGAACCAATATACATGTGTACAT
AACACACGAGAGTGCCTCACAGGGTACACGTTCGGCTCGCGCATTGACCC
CTTCGGCGCGTTCACCATTCGGCGAATACAAGCGGAGTTTCAAGCGAGAG
TCAAATTTCCACAAAATTCTCCATGTATCTAGAGCAATTGAGCTTGGCAG
ACAGAAAGAGAGGAGAAATGGAGCCCTATCGCGCCGATGTTCAAGCCCAA
AGTTGTACACTTATGTGTGCGTACCTTTAATCTGTGCTTGCATCTGCAGA
TCTTTGGCATTGTGAATCGGGTGATTGAAAAGGCTGGTGTTCTGCAAAGG
ACACCGTTCGACACTGGGTCTCAGGAACAAATAGCTCAGCTCGAGGGACT
TTGGTCCTCCCTCCAACCTTCCGTCCGCCGCACTGCTGATGGCTGGGGAG
CTCTCGGATTTCAAAACGGGGAGCGACCTGAGACAGACTTCCGGGGCATG
GGTCTTCTTGGTGAGATGATTTCTTGTTTTTAAGTGTCTTAATCGTTTGT
GCAGTAGACTGAATTCGAACTTGTTTGACCTCGAAACCAGCAGTACGCGA
GTACACCATGGTACGGGCAAAACGTTTTTGCGTGGGCACACAGCAAATCC
CAATGTGCCAATCCGAAACAAAACCTTCGAGACACCTTGCCTGAGGGAGT
CAGTCGCTCCGTTTTCACGTTTTCACGGCCATCACTGTGTAGATATTTGA
TAATGACAACTTTATGTAGCCCACCGGAAACCCACACTCGGTGCCTTGCC
TGCAACAGTAAATAGCAGCACGCGCCTTCCTCACCGAAGTAGGTAGGCAG
CCGGCAGCAATTGGACTGGTGGCAAAAATTAACTTCCATCCTATCCCCGG
CACGAACAAAACTCATATCTCCCTGAGACACATGCAATGCAACTTGTACA
CTTTTTCGATGCCCCGTTTACAAGTAGGTACAAGTCGGCCTGCTGTTTGC
GGAAAACTTTTCATGGGCCCCATCTTGAAATAAAGGTTGGCCTTGGGAAG
TGATGTGAGTGAAGAGGGCTTGGACTAAATCTTTAATGTTTTGTCACATC
CGGGTGTGGAACCTCGCATGACAGGTCTGGTACAACTTCTTTTTTTCTCT
GAATCGCGGAATGCTGAAGCCAGGCAGATCTTGGCGGACTCGACCAATCC
GAAGCGATATTTCCCCTTCGCGGCCGCAGGTTGGTTTGTTTTCGTGTTTC
GCTGCAATGTAAAAGTGTGCAGCATAGTGTAACCACACAGAGTGGACAGA
CGGGGGACATACATAGAGGCGCAATTTGACCAAGCGTCTCGTGGTTTTAG
CGTAAAGGTCCAGAAGGCTGCTCAAGAGGCAAAGACAAGTTGCCAGCTCA
CCACACCTTCTTCGTTTTAGAAGAAGGGGCAGCTGCCGGAAAACATATCT
GCGAATTTGCAGACACCCGGATAAAAATAGTGGCATTATACCGCTTTGTG
CATCACTAAAGCCTGCGGTCCATGTTGGCCCGTGATTTTATGTAAAAGGG
GGGTACCATGGCACCGTGACAGCTCGCCGGCTTGATGTTTTTTTTCACAA
ATACACTTTCCAGTTCGCCCCCTAGCGTCCCGCTGTGCGACCCCAGCTGT
GTTTCAAAAGCAACAGTTTGCATTTCTGGAGAATGGATAGCTCGTCCTTC
ACAAGAAACAGCAGTGCGCTTCCCTTGGGGAGCCTGCTGATATGGTATGT
AGAGGCCATCGCATGTCCTGGACAGCAGCAGCAGGTAGCTGTAAGCCACG
CTTTCGAGGTTCTGGTGGACACGAACGATTTTTTCAACCGCTCTTGTTGA
AGTGAAAAGCGGCGTAATTACATGTTCCACGGACGAGCCTAACGCCGTGG
CGCCATTGCGCCAACAAAAAAATGGACGCGACGCCAATGTAGCCGGGCTG
TCTTGGAAGCGTGTGGAATACTCGACGGGCAGCACAGTATAATCGTGCTA
CTTCCATTTCAAACGCACAAAGGGGTGGTAAATCAACTCTAACATCAAGT
AGTGCTCTGTTTGTTGTTGAGATTTTCGAATGTCACAACGAGTTCGCCCT
AGTGTGTGGACCGCAGCTTTAAGAAGTGTGGTGTTGTGTTTTTCGTGTAC
TAACACAACAAATGTCTGTATCTCAAATTGGCAGGCATAAACGTAACAGC
ATTCACGCAAACCATGCTCGAGCAACGGCGCCTCGACATGTGTCTCTACG
ACGCCATCGTGAAACACGTGAAAACGGGCAAGATGCCACAAGACAGGGAC
ATGCTCGTGTCCGCTGGGTTTGCTGCCTTCAACAGCATCTATGGTGAGAT
ATGGGCAGGATGCAGGCGCGCGCGGGTTATTTGGGTGGAAAACAGATTAC
TTTTTTTCGCGCGTAGAGAGCGCTAGTGATGCCCTGCTTGTGGTTTAACT
CGCACTCTCCCCCGTTTCCGATTTTCAGGTGATGAGTACGTTGAATTCTC
GCGATTCTGGCATGCATCAAACCCGGAAAATAGCACGATGGCCTTCCCCG
GTATCTTTGGAATGATCAAGCAGCGATCGAACTCGAGATTCCCACGTCTT
GTGCAGGAGGATTAAGGCTTGAGAGTGCCTGTATCCCACAACAGTAGTTG
CGGAGTTTACTACTAAATTTCGCCGCAACTATCGCGCGCCCCGGAGGCTG
TTTTTAAAGGGTTGCGTACCTTTTATATATTGCATGGTACGATTTGTTAG
TTATCGAAAGGCGGTACCGCTTCTAATAGCCCGAAGCGTAGAAGCGTGTT
GTAGAAGCATAGAATGGCGATACGAATAGTGGCACGATGCGGGCAAGTAG
GTATCCTTTTAGTACACCCAGCCGTATTCCGCGCGCAGTGTAGTATCGAT
TTCCTTGCGTAATTTTTAGGTGGACGATGGATGGATGCAATTGTAGGTCC
TGCGGGAAGTGCGCTCGCAACCCATTTATGTTTGCCGCGGATAAACTGGC
CTTTTTGGCCTGAGCTGGAGGCGCTTGTGCGCGAAGAATTCCTCACGAAA
GGTTCACAGATAGTGCCGTATTCTGTCTGCATTGTCTGGAAGTATATGTC
TGCAGTGTGTGGAAAAGGCTTGTTGTAAAAATGTATGGCCTCTTGTACTC
GGTGATTCCTCTGGAACATTCGCCGCTGTAAAGCCGCAATTTTTGTCTTT
GAGGTGTATTTTTTTCGCGACAGCAGTGTTCTTTAAATGAGTACTTGTAG
GAGAAAAAAGAGGTAGAAATCGTTTGAAGAGTGATGAATTCTCTGTTTTT
ATTACGTTAGGGAGCCGGTGTAATGGTAACGGTATGGGAGATGTTTGCTT
CACGTAATTGCTTCACTGCGAGGTGCACTGATCGGTGTCAGGTTGTGCAG
CAATTCCGTTGTATCTCTGTTGTTTACGACAACACTGAAAGCTCGCACTT
GTCCCCAATCACACCAAAATACCCCCATTTGGGAAACTTGGTAAGTTCGG
AGCGCAGGTCGAACCGAATGCACCTTTGACACTGGGCTAGTACAAAGCGA
GGCGAAAAGCCTTCCAGCAGACAAAACGCCTCCGACAGGTGGTGCATAAT
TTCAGTTGCAGGTGGTGAAGGAGTTTCTGTTGCCGCCAAACCACTATCGA
GAATGACAAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6905:3003..9914+

>mRNA_L-elsbetiae_contig6905.15675.1 ID=mRNA_L-elsbetiae_contig6905.15675.1|Name=mRNA_L-elsbetiae_contig6905.15675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1866bp|location=Sequence derived from alignment at L-elsbetiae_contig6905:3003..9914+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACCCGTTTCAAACAGTAGTGCCCGCATCTGGTACTCGAAAACT
GCTCCGCTCTCTCGAACGAGCTTTCATGCGAGCTTGGAAAGCGTTGATGC
GGCGGGTGACGGGTCGGTCAGAGATGAGTCGGATACTCAAAAGGTATGAA
GGATACTCTAGCGACCTAGTCCAAGCTATCGCGAGATCAATTGCTAGCAG
CTCGGAGAAAGATGCTGTGTTCCGCACGAAGGTGTTGGACGTCGCTGCGC
TCTCCGCACGGCTCGCGGACAAGAAAGAAATCTCCGATGAAGACAGGCCC
CGGTTGATGTGGTGCTTAGAGATGGCGAACCCGTTTCAAACAGTAGTGCC
CGCATCTGGTACTCGAAAACTGCTCCGCTCTCTCGAACGAGCTTTCATGC
GAGCTTGGAAAGCGTTGATGCGGCGGGTGACGGGTCGGTCAGAGATGAGT
CGGATACTCAAAAGGTATGAAGGATACTCTAGCGACCTAGTCCAAGCTAT
CGCGAGATCAATTGCTAGCAGCTCGGAGAAAGATGCTGTGTTCCGCACGA
AGGTGTTGGACGTCGCTGCGCTCTCCGCACGGCTCGCGGACAAGAAAGAA
ATCTCCGATGAAGACAGGCCCCGGTTGATGTGGTGCTTAGAGATCTTTGG
CATTGTGAATCGGGTGATTGAAAAGGCTGGTGTTCTGCAAAGGACACCGT
TCGACACTGGGTCTCAGGAACAAATAGCTCAGCTCGAGGGACTTTGGTCC
TCCCTCCAACCTTCCGTCCGCCGCACTGCTGATGGCTGGGGAGCTCTCGG
ATTTCAAAACGGGGAGCGACCTGAGACAGACTTCCGGGGCATGGGTCTTC
TTGATCTTTGGCATTGTGAATCGGGTGATTGAAAAGGCTGGTGTTCTGCA
AAGGACACCGTTCGACACTGGGTCTCAGGAACAAATAGCTCAGCTCGAGG
GACTTTGGTCCTCCCTCCAACCTTCCGTCCGCCGCACTGCTGATGGCTGG
GGAGCTCTCGGATTTCAAAACGGGGAGCGACCTGAGACAGACTTCCGGGG
CATGGGTCTTCTTGGTCTGGTACAACTTCTTTTTTTCTCTGAATCGCGGA
ATGCTGAAGCCAGGCAGATCTTGGCGGACTCGACCAATCCGAAGCGATAT
TTCCCCTTCGCGGCCGCAGGTCTGGTACAACTTCTTTTTTTCTCTGAATC
GCGGAATGCTGAAGCCAGGCAGATCTTGGCGGACTCGACCAATCCGAAGC
GATATTTCCCCTTCGCGGCCGCAGGCATAAACGTAACAGCATTCACGCAA
ACCATGCTCGAGCAACGGCGCCTCGACATGTGTCTCTACGACGCCATCGT
GAAACACGTGAAAACGGGCAAGATGCCACAAGACAGGGACATGCTCGTGT
CCGCTGGGTTTGCTGCCTTCAACAGCATCTATGGCATAAACGTAACAGCA
TTCACGCAAACCATGCTCGAGCAACGGCGCCTCGACATGTGTCTCTACGA
CGCCATCGTGAAACACGTGAAAACGGGCAAGATGCCACAAGACAGGGACA
TGCTCGTGTCCGCTGGGTTTGCTGCCTTCAACAGCATCTATGGTGATGAG
TACGTTGAATTCTCGCGATTCTGGCATGCATCAAACCCGGAAAATAGCAC
GATGGCCTTCCCCGGTATCTTTGGAATGATCAAGCAGCGATCGAACTCGA
GATTCCCACGTCTTGTGCAGGAGGATTAAGTGATGAGTACGTTGAATTCT
CGCGATTCTGGCATGCATCAAACCCGGAAAATAGCACGATGGCCTTCCCC
GGTATCTTTGGAATGATCAAGCAGCGATCGAACTCGAGATTCCCACGTCT
TGTGCAGGAGGATTAA
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