mRNA_L-elsbetiae_contig6901.15671.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6901.15671.1 vs. uniprot
Match: A0A6H5KX61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX61_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 8.990e-131 Identity = 212/324 (65.43%), Postives = 242/324 (74.69%), Query Frame = 1 Query: 10 RRLEPVVRRAGVCQRAAALACHAIAQCAGAGRSGGXXXXXXXXXXXXAVQRRKPRMMGMGVTQAARVLKQAL--ESDPRKWEVGQIDEGFRLSHGAKAQAASALLALLEGRDGEVAAESESSIVEWAQNLGPKDRLSTPLPLLMSVTGLLSRPPAHVINLARRPYRWRAVSDVARREGVLLHRHAAVDSLGVEASSSWTGAAAGGGKGFISDKDVATSWATELNTMHDKDCQKATTVDMHPSERACAASHLDLWKRHKLCKLAPFMPEVHPDAVLILEDDARLQPGFLKCAKAAMLQAAAMDRDPKTKKVGLKKKWDVIYLGHM 975 RRL P +RR GVCQRAAALACH +AQCA AGR R R + M AAR L AL +S+ KWE GQ+DE +L GA+AQAASALL+LLEGR GE AAESE SIVEWAQ L P++RLS PLPLL+S+T LSRPPAHVINLARRP+RW+AVSD ARR+GV LHRH AVD VEASS KG+ISDK+VA +WATELNT++DKDC+K TT MHPSERACAASHLDLW+RH+ KLAPFMPEVHPDAVLILEDDA+L+PGFLK AKA MLQAAAMD K K +GL K+WD+IYLGH+ Sbjct: 22 RRLVPAIRRPGVCQRAAALACHVLAQCAAAGRGSSRGRAV-----------RSARGLDMFAANAARALMDALRPDSEAEKWEAGQLDEDVKLPFGARAQAASALLSLLEGRYGESAAESERSIVEWAQRLKPEERLSAPLPLLLSITATLSRPPAHVINLARRPFRWKAVSDSARRQGVWLHRHEAVDWKAVEASSM-------SAKGWISDKEVALTWATELNTIYDKDCEKETTHVMHPSERACAASHLDLWRRHRDSKLAPFMPEVHPDAVLILEDDAKLEPGFLKAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHI 327
BLAST of mRNA_L-elsbetiae_contig6901.15671.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI) HSP 1 Score: 387 bits (993), Expect = 1.320e-122 Identity = 212/326 (65.03%), Postives = 244/326 (74.85%), Query Frame = 1 Query: 10 RRLEPVVRRAGVCQRAAALACHAIAQCAGAGR--SGGXXXXXXXXXXXXAVQRRKPRMMGMGVTQAARVLKQAL--ESDPRKWEVGQIDEGFRLSHGAKAQAASALLALLEGRDGEVAAESESSIVEWAQNLGPKDRLSTPLPLLMSVTGLLSRPPAHVINLARRPYRWRAVSDVARREGVLLHRHAAVDSLGVEASSSWTGAAAGGGKGFISDKDVATSWATELNTMHDKDCQKATTVDMHPSERACAASHLDLWKRHKLCKLAPFMPEVHPDAVLILEDDARLQPGFLKCAKAAMLQAAAMDRDPKTKKVGLKKKWDVIYLGHM 975 RRL +RR GVCQRAAALACH +AQCA AGR SGG R R + M AAR L AL +S+ KWE GQ+DE +L GA+AQAASALL+LLEGR GE AAESE +IVEWAQ L P++RLS PLPLL+S+T LSRPPAHVINLARRP+RW+AVSD ARR+GV LHRH AVD VEASS KG+ISDK+VA +WATELNT++DKDC+K TT MHPSERACAASHLDLW+RH+ KLAPFMPEVHPDAVLILEDDA+L+PGFL+ AKA MLQAAAMD K K +GL K+WD+IYLGH+ Sbjct: 595 RRLVLAIRRPGVCQRAAALACHVLAQCAAAGRGSSGGRVV-------------RSARGLDMRAANAARALMDALRPDSEAEKWEAGQLDEDVKLPFGARAQAASALLSLLEGRYGESAAESERTIVEWAQRLKPEERLSAPLPLLLSITATLSRPPAHVINLARRPFRWKAVSDSARRQGVWLHRHEAVDWKAVEASSM-------SAKGWISDKEVALTWATELNTIYDKDCEKETTHVMHPSERACAASHLDLWRRHRDSKLAPFMPEVHPDAVLILEDDAKLEPGFLEAAKATMLQAAAMDTVRKKKSIGLSKEWDIIYLGHI 900
BLAST of mRNA_L-elsbetiae_contig6901.15671.1 vs. uniprot
Match: A0A7S3JY73_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JY73_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.610e-9 Identity = 80/259 (30.89%), Postives = 113/259 (43.63%), Query Frame = 1 Query: 229 SDPRKWEVGQIDEGFRLSH-GAKAQAASALLALLEGRDGEVAAESESSIVEWAQNLGPKDRLSTPLPLLMSVTGLLSRPPAHVINLARRPYRWRAVSDVARREGVLLHRHAAVDSLGVEASSSWTGAAAGGGKGFISDKDVATSW---ATELNTMHD---KDCQKATTVDMHPSERACAASHLDLWKR----HKLCKLAPFMPEVHPDAVLILEDDARLQPGFLKCAKAAMLQAAAMDRDPKTKKVGLKKKWDVIYLGH 972 +DP VG+ F ++H + +AASAL A L G + + S ++++ WA D+ P L+ + L RP A +NLA+ R RA++ +A + L R A D V SS V+ W A LN D + Q AT+V M PSER CAASH++LW + HK VLILEDD L P F + AA+ AA+ D D++ LG+ Sbjct: 548 ADPLDTLVGEA-RAFLMNHLDSSWEAASALAACLNGLEND---GSTTALLNWAHTTFSSDK-ELPPALMRKLAALQRRPLARFLNLAQATDRQRAMARLALVTNLALERIEAFDGNIVTIPSS----------------RVSFYWSEAARSLNAKFDTSSRGTQVATSVPMSPSERGCAASHIELWGKAARDHK--------------PVLILEDDIVLAPQFNQRYAAAL---AALPDDV-----------DILLLGY 757 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6901.15671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6901.15671.1 >prot_L-elsbetiae_contig6901.15671.1 ID=prot_L-elsbetiae_contig6901.15671.1|Name=mRNA_L-elsbetiae_contig6901.15671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=326bp PRRRRLEPVVRRAGVCQRAAALACHAIAQCAGAGRSGGNGSGGGGGGGGGback to top mRNA from alignment at L-elsbetiae_contig6901:1086..10517+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6901.15671.1 ID=mRNA_L-elsbetiae_contig6901.15671.1|Name=mRNA_L-elsbetiae_contig6901.15671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9432bp|location=Sequence derived from alignment at L-elsbetiae_contig6901:1086..10517+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6901:1086..10517+ >mRNA_L-elsbetiae_contig6901.15671.1 ID=mRNA_L-elsbetiae_contig6901.15671.1|Name=mRNA_L-elsbetiae_contig6901.15671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1956bp|location=Sequence derived from alignment at L-elsbetiae_contig6901:1086..10517+ (Laminarionema elsbetiae ELsaHSoW15)back to top |