mRNA_L-elsbetiae_contig6900.15669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6900.15669.1
Unique NamemRNA_L-elsbetiae_contig6900.15669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: D7FGX7_ECTSI (ASCH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX7_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.160e-24
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    7 MGSTG-PKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVR 174
            M ST  PKN+CLTMHQPWASLLVAG+KRVEGRSW T+HRG LW+HAAAKEP+  EVR
Sbjct:   14 MASTARPKNVCLTMHQPWASLLVAGIKRVEGRSWPTEHRGILWVHAAAKEPNPAEVR 70
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: A0A7S2XVX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVX9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.860e-20
Identity = 36/50 (72.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:   28 NLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            N CLT+HQPWASL+V G+KRVEGRSW T+HRG+LWIHAA+ EPS EE+ +
Sbjct:   21 NHCLTLHQPWASLMVYGIKRVEGRSWATNHRGRLWIHAASHEPSQEEIEQ 70
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: D8SJ43_SELML (ASCH domain-containing protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SJ43_SELML)

HSP 1 Score: 85.9 bits (211), Expect = 1.280e-19
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   25 KNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            K +CLTMHQPWASLLV G+KR+EGRSW +  RG+LWIHAAAK P AE +RE
Sbjct:    5 KEVCLTMHQPWASLLVHGIKRIEGRSWSSSVRGRLWIHAAAKVPEAETIRE 55
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: D8LV91_BLAHO (ASCH domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LV91_BLAHO)

HSP 1 Score: 85.1 bits (209), Expect = 3.190e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:   10 GSTGPKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEV 171
            G    K  CLTMHQPWASLLV G+KR EGR W+TD RG+LWIHAAAK+P+ +++
Sbjct:   74 GDKADKMTCLTMHQPWASLLVYGIKRAEGRGWNTDFRGRLWIHAAAKQPTPDQI 127
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: UPI000711AE83 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711AE83)

HSP 1 Score: 87.8 bits (216), Expect = 3.540e-19
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   10 GSTGPKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAE 165
            G    K +CLTMHQPWASLLV G+KR EGR W+TD RG+LWIHAAAKEPS E
Sbjct:   61 GDKADKMICLTMHQPWASLLVYGIKRAEGRGWNTDFRGRLWIHAAAKEPSPE 112
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: UPI0008541544 (activating signal cointegrator 1 isoform X1 n=4 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008541544)

HSP 1 Score: 88.2 bits (217), Expect = 5.550e-19
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 RRMGSTGPKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            R +   G + +CL+MHQPWASLLVAG+KRVEGR+W++ HRG+LWI AAAK PS +E+ E
Sbjct:  426 RELQEIGDQGMCLSMHQPWASLLVAGIKRVEGRTWYSAHRGRLWIAAAAKRPSPQEISE 484
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: UPI0018975AB2 (activating signal cointegrator 1-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018975AB2)

HSP 1 Score: 83.2 bits (204), Expect = 6.830e-19
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   34 CLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            CL+MHQPWASLLV G+KRVEGR+W+T HRG+LWI AAAK+P+ +E+ E
Sbjct:   51 CLSMHQPWASLLVKGIKRVEGRTWYTSHRGRLWIAAAAKKPTPQEIAE 98
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: A0A0S7HNC7_9TELE (TRIP4 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HNC7_9TELE)

HSP 1 Score: 85.1 bits (209), Expect = 6.960e-19
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   34 CLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            CL+MHQPWASLLV G+KRVEGR+W+T HRG+LWI AAAK+P+A+E+ E
Sbjct:  153 CLSMHQPWASLLVKGIKRVEGRTWYTSHRGRLWIAAAAKKPTAQEIAE 200
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: A0A8J6FL38_ELECQ (ASCH domain-containing protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FL38_ELECQ)

HSP 1 Score: 87.4 bits (215), Expect = 1.040e-18
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 RRMGSTGPKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            R +     + +CL+MHQPWASLLVAG+KRVEGRSW++ HRG+LWI AAAK+PS +E+ E
Sbjct:  415 RELQEISDQGMCLSMHQPWASLLVAGIKRVEGRSWYSAHRGRLWIAAAAKKPSPQEISE 473
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BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Match: A0A7J8IV15_ROUAE (Thyroid hormone receptor interactor 4 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8IV15_ROUAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.320e-18
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   34 CLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEPSAEEVRE 177
            CL+MHQPWASLLV G+KRVEGRSW+T HRG+LWI A AK PS +EV E
Sbjct:   48 CLSMHQPWASLLVRGIKRVEGRSWYTPHRGRLWIAATAKRPSPQEVSE 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6900.15669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGX7_ECTSI2.160e-2478.95ASCH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2XVX9_9STRA4.860e-2072.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8SJ43_SELML1.280e-1972.55ASCH domain-containing protein n=4 Tax=Selaginella... [more]
D8LV91_BLAHO3.190e-1964.81ASCH domain-containing protein n=1 Tax=Blastocysti... [more]
UPI000711AE833.540e-1973.08hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
UPI00085415445.550e-1962.71activating signal cointegrator 1 isoform X1 n=4 Ta... [more]
UPI0018975AB26.830e-1970.83activating signal cointegrator 1-like n=1 Tax=Nema... [more]
A0A0S7HNC7_9TELE6.960e-1972.92TRIP4 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A8J6FL38_ELECQ1.040e-1862.71ASCH domain-containing protein n=2 Tax=Eleutheroda... [more]
A0A7J8IV15_ROUAE1.320e-1875.00Thyroid hormone receptor interactor 4 n=1 Tax=Rous... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6900contigL-elsbetiae_contig6900:572..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2880.D7FGX7
Preferred nameTRIP4
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002020,GO:0002119,GO:0002164,GO:0003674,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006355,GO:0006810,GO:0007154,GO:0007165,GO:0007275,GO:0008134,GO:0008150,GO:0009719,GO:0009725,GO:0009755,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0014070,GO:0016604,GO:0016922,GO:0019219,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030331,GO:0030518,GO:0030520,GO:0030522,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031594,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033993,GO:0035035,GO:0035257,GO:0035258,GO:0040024,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043401,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045202,GO:0045595,GO:0045661,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0048545,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051427,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0080090,GO:0099053,GO:0140110,GO:1901998,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.transcription coactivator activity
EggNOG OGsKOG2845@1,KOG2845@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.0086758-CDS-L-elsbetiae_contig6900:571..7421622816765.0086758-CDS-L-elsbetiae_contig6900:571..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6900 572..742 -
1691683796.261028-CDS-L-elsbetiae_contig6900:571..7421691683796.261028-CDS-L-elsbetiae_contig6900:571..742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6900 572..742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816765.0194569-UTR-L-elsbetiae_contig6900:742..7481622816765.0194569-UTR-L-elsbetiae_contig6900:742..748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6900 743..748 -
1691683796.2747009-UTR-L-elsbetiae_contig6900:742..7481691683796.2747009-UTR-L-elsbetiae_contig6900:742..748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6900 743..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6900.15669.1prot_L-elsbetiae_contig6900.15669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6900 572..742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6900.15669.1

>prot_L-elsbetiae_contig6900.15669.1 ID=prot_L-elsbetiae_contig6900.15669.1|Name=mRNA_L-elsbetiae_contig6900.15669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=57bp
MGSTGPKNLCLTMHQPWASLLVAGVKRVEGRSWHTDHRGKLWIHAAAKEP
SAEEVRE
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mRNA from alignment at L-elsbetiae_contig6900:572..748-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6900.15669.1 ID=mRNA_L-elsbetiae_contig6900.15669.1|Name=mRNA_L-elsbetiae_contig6900.15669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig6900:572..748- (Laminarionema elsbetiae ELsaHSoW15)
AGGAGAATGGGATCAACCGGGCCTAAGAACTTGTGCCTAACAATGCATCA
GCCTTGGGCGTCGCTGCTCGTTGCGGGCGTGAAACGTGTTGAAGGACGAA
GCTGGCATACCGACCACAGAGGAAAACTATGGATACATGCAGCGGCCAAG
GAGCCAAGCGCAGAGGAGGTTAGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6900:572..748-

>mRNA_L-elsbetiae_contig6900.15669.1 ID=mRNA_L-elsbetiae_contig6900.15669.1|Name=mRNA_L-elsbetiae_contig6900.15669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=342bp|location=Sequence derived from alignment at L-elsbetiae_contig6900:572..748- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCAACCGGGCCTAAGAACTTGTGCCTAACAATGCATCAGCCTTG
GGCGTCGCTGCTCGTTGCGGGCGTGAAACGTGTTGAAGGACGAAGCTGGC
ATACCGACCACAGAGGAAAACTATGGATACATGCAGCGGCCAAGGAGCCA
AGCGCAGAGGAGGTTAGAGAGATGGGATCAACCGGGCCTAAGAACTTGTG
CCTAACAATGCATCAGCCTTGGGCGTCGCTGCTCGTTGCGGGCGTGAAAC
GTGTTGAAGGACGAAGCTGGCATACCGACCACAGAGGAAAACTATGGATA
CATGCAGCGGCCAAGGAGCCAAGCGCAGAGGAGGTTAGAGAG
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