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Homology
BLAST of mRNA_L-elsbetiae_contig69.15664.1 vs. uniprot
Match: A0A6H5L0C5_9PHAE (VASt domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0C5_9PHAE) HSP 1 Score: 538 bits (1387), Expect = 2.610e-172 Identity = 299/455 (65.71%), Postives = 346/455 (76.04%), Query Frame = 3
Query: 3 VILRLSDVVGVQKTSTLRIVPNALTLIKRDGGKVTLGSFLFRDDCHSLLLRLVTVSSSISRIHGMSPAAATGAVSPASLGDRFVARDERPARNAPPEPSESAPGTAISRALAVATRPCDS-FETMVEAVLPCTTAQVFAWVWGRRTTFWEDFLRAQGETGLEINQWRVAAVAAEARRRLSDLFPGETFDEQRELTFTHPRTGFVVGPKKVFTRQQQGFRVERRKRSSGARTSQGVTPMDRVVLCQTTMLERGAPMADTFTVLGRVVLSREPGQGPDREPRCRVHIGFDVAFHKSTMLRGAIRAGAQEETRNSWKSWLQATKKVVLYQRHQLGQKAANDGVAENPPANVFALARDF--KAGAATSAAGKVPRAVEGEAAAKALPGDIGWVNLIVGTVRWLVESGLAAVKSAGVPTVLALFCLLLVARQQREVQRLTTQLEEMLEDLRLEGLRNRVD 1358
V++ LS VV V+KTSTLR VPNALTL+KR G KVTLGSFLFRDDCH+LLLRLV VS SIS +HG+SP TGA+ + DE P PEPSE+APGTAISRALAVA RP DS FETMVEAVLPCTTAQVFAW+WGR T FW DFLRAQGETGL I W AV +EA R L DLFPGE FDEQRELTFTHPRTGFVVGPKKV TRQ QG+RVERR+ +G+R PMDRVVLCQTTM+ERGAP+AD FT+LG+V+LSR+P G D+EPRCRV IGFDVAFH+STMLRGAIR+GAQEETRNSWKSWL A+KKVV+YQRHQLG+ AANDGVA PP +FALA DF + GA G+ P E E A + + W L+VG RWL E+G++A++SAGV TVL CL LV QQR+V+RL+ Q+EE++ + +RN VD
Sbjct: 1400 VVVLLSGVVRVEKTSTLRFVPNALTLVKRGGEKVTLGSFLFRDDCHALLLRLVKVSGSISLMHGVSPGTPTGAL------PLDGSSDELPEDLLEPEPSETAPGTAISRALAVAGRPDDSKFETMVEAVLPCTTAQVFAWLWGRDTKFWADFLRAQGETGLTITPWGKTAVHSEAGRGLRDLFPGEAFDEQRELTFTHPRTGFVVGPKKVLTRQVQGYRVERREDWTGSRR-----PMDRVVLCQTTMMERGAPLADHFTLLGKVILSRDP-PGQDQEPRCRVCIGFDVAFHRSTMLRGAIRSGAQEETRNSWKSWLAASKKVVMYQRHQLGRTAANDGVAAKPPEGIFALAEDFVPQDGATAGVDGQAPCGAEMEPAIQPPEKNTDWAKLVVGAARWLAENGVSALESAGVSTVLIFVCLFLVMMQQRDVRRLSGQVEELVNAVG--EMRNNVD 1840
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 459.5 |
| Seed ortholog evalue | 1.6e-126 |
| Seed eggNOG ortholog | 2880.D7FPV4 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | intracellular sterol transport |
| EggNOG OGs | KOG1032@1,KOG1032@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 7 |
| Model size | 1397 |
| Cds size | 1194 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816764.2037992-UTR-L-elsbetiae_contig69:25178..25187 | 1622816764.2037992-UTR-L-elsbetiae_contig69:25178..25187 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 25179..25187 - |
| 1691683795.6395273-UTR-L-elsbetiae_contig69:25178..25187 | 1691683795.6395273-UTR-L-elsbetiae_contig69:25178..25187 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 25179..25187 - |
| 1622816764.2954595-UTR-L-elsbetiae_contig69:27833..27939 | 1622816764.2954595-UTR-L-elsbetiae_contig69:27833..27939 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 27834..27939 - |
| 1691683795.7169943-UTR-L-elsbetiae_contig69:27833..27939 | 1691683795.7169943-UTR-L-elsbetiae_contig69:27833..27939 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 27834..27939 - |
| 1622816764.308824-UTR-L-elsbetiae_contig69:28105..28193 | 1622816764.308824-UTR-L-elsbetiae_contig69:28105..28193 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 28106..28193 - |
| 1691683795.7269707-UTR-L-elsbetiae_contig69:28105..28193 | 1691683795.7269707-UTR-L-elsbetiae_contig69:28105..28193 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig69 28106..28193 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816764.2180967-CDS-L-elsbetiae_contig69:25187..25647 | 1622816764.2180967-CDS-L-elsbetiae_contig69:25187..25647 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 25188..25647 - |
| 1691683795.650505-CDS-L-elsbetiae_contig69:25187..25647 | 1691683795.650505-CDS-L-elsbetiae_contig69:25187..25647 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 25188..25647 - |
| 1622816764.233859-CDS-L-elsbetiae_contig69:25804..25854 | 1622816764.233859-CDS-L-elsbetiae_contig69:25804..25854 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 25805..25854 - |
| 1691683795.6597772-CDS-L-elsbetiae_contig69:25804..25854 | 1691683795.6597772-CDS-L-elsbetiae_contig69:25804..25854 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 25805..25854 - |
| 1622816764.2465122-CDS-L-elsbetiae_contig69:26122..26266 | 1622816764.2465122-CDS-L-elsbetiae_contig69:26122..26266 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 26123..26266 - |
| 1691683795.6712644-CDS-L-elsbetiae_contig69:26122..26266 | 1691683795.6712644-CDS-L-elsbetiae_contig69:26122..26266 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 26123..26266 - |
| 1622816764.2575154-CDS-L-elsbetiae_contig69:26944..27063 | 1622816764.2575154-CDS-L-elsbetiae_contig69:26944..27063 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 26945..27063 - |
| 1691683795.6816094-CDS-L-elsbetiae_contig69:26944..27063 | 1691683795.6816094-CDS-L-elsbetiae_contig69:26944..27063 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 26945..27063 - |
| 1622816764.2694278-CDS-L-elsbetiae_contig69:27222..27430 | 1622816764.2694278-CDS-L-elsbetiae_contig69:27222..27430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 27223..27430 - |
| 1691683795.6912856-CDS-L-elsbetiae_contig69:27222..27430 | 1691683795.6912856-CDS-L-elsbetiae_contig69:27222..27430 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 27223..27430 - |
| 1622816764.28158-CDS-L-elsbetiae_contig69:27620..27833 | 1622816764.28158-CDS-L-elsbetiae_contig69:27620..27833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 27621..27833 - |
| 1691683795.7076957-CDS-L-elsbetiae_contig69:27620..27833 | 1691683795.7076957-CDS-L-elsbetiae_contig69:27620..27833 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig69 27621..27833 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig69.15664.1 >prot_L-elsbetiae_contig69.15664.1 ID=prot_L-elsbetiae_contig69.15664.1|Name=mRNA_L-elsbetiae_contig69.15664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=398bp
MSPAAATGAVSPASLGDRFVARDERPARNAPPEPSESAPGTAISRALAVA
TRPCDSFETMVEAVLPCTTAQVFAWVWGRRTTFWEDFLRAQGETGLEINQ
WRVAAVAAEARRRLSDLFPGETFDEQRELTFTHPRTGFVVGPKKVFTRQQ
QGFRVERRKRSSGARTSQGVTPMDRVVLCQTTMLERGAPMADTFTVLGRV
VLSREPGQGPDREPRCRVHIGFDVAFHKSTMLRGAIRAGAQEETRNSWKS
WLQATKKVVLYQRHQLGQKAANDGVAENPPANVFALARDFKAGAATSAAG
KVPRAVEGEAAAKALPGDIGWVNLIVGTVRWLVESGLAAVKSAGVPTVLA
LFCLLLVARQQREVQRLTTQLEEMLEDLRLEGLRNRVDEQMMERELG* back to topmRNA from alignment at L-elsbetiae_contig69:25179..28193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig69.15664.1 ID=mRNA_L-elsbetiae_contig69.15664.1|Name=mRNA_L-elsbetiae_contig69.15664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3015bp|location=Sequence derived from alignment at L-elsbetiae_contig69:25179..28193- (Laminarionema elsbetiae ELsaHSoW15)
AGGTAATCTTGAGGCTGTCGGACGTGGTTGGCGTGCAGAAGACATCGACT
CTGCGAATTGTGCCCAACGCGCTGACTCTCATCAAAAGGTGAGTGGAGAA
CTTGAGTATCAGCACTTGCGTGATGCCGTCGAGTGTTCGTTTCTGAAAAA
TAGAGCGGTGGCGCGCAAAGTAGAGGTGGGTATGATTTAAGACCTTACGG
TGTGTGTCGTGTTGCGCTCGCTCGGTGCGTCCCCTTGATCATGCTCGTCG
GCAGGGACGGAGGAAAGGTCACCCTAGGTTCTTTCCTGTTTCGCGACGAC
TGCCACTCTCTCCTCTTGAGGCTGGTCACGGTCTCCAGCTCGATATCTAG
GATTCACGGCATGTCTCCAGCGGCTGCCACCGGTGCTGTGTCTCCAGCTT
CGTTGGGAGACCGTTTTGTTGCCAGGGACGAGCGACCGGCGAGAAACGCA
CCTCCAGAGCCCTCTGAGAGTGCCCCTGGCACAGCAATTTCCCGCGCTCT
CGCTGTCGCGACCCGACCATGCGATAGCTTTGAGACCATGGTTGAAGCGG
TTCTCCCCTGCACGACCGCTCAGGTAATTTGATTCAGTGTCTCGAATGAA
CGAACTCAGGGCCGGCGGTCCTAGGTGGGTGTGTCTGTTCCGGCTGATTT
CTATGTTGTTGCGACTGAATTTCCCCCCGCAATGGGTTTCCCCCGAGGCG
ATTGTTGCGTGCCTCTGTCGGCAGCGGAGACACTCCCTTAACATTGGACC
GTTTGCATGTCAGGTGTTCGCTTGGGTTTGGGGACGGCGTACGACGTTTT
GGGAGGATTTCCTGCGTGCTCAGGGAGAAACTGGCCTTGAGATTAATCAG
TGGCGAGTGGCGGCAGTGGCGGCAGAGGCTAGAAGGAGGCTGAGTGATCT
GTTTCCTGGAGAAACTTTCGACGAGCAGCGGGAGCTGACCTTCACTCACC
CTCGAACTGGGTTCGTCGTCGGTACGTGGTGTAGGGCAGGAGCTAACGAG
GGCCTATATCATTGCGGTAAAAGTGGTCGAACGACCTCCACAAGCCTCGA
TTATTTCTCTTGATCCTCGGCATCGGTAGTGACACATGCCTGCGTTCGCA
CAACTTACCGTTGTGCTGCTTTAACTTCAGGCCCCAAGAAGGTTTTCACT
CGCCAACAGCAGGGTTTCCGTGTGGAGCGGCGTAAGCGCTCCTCAGGAGC
TCGAACATCACAGGGAGTCACCCCGATGGACCGAGTCGTTTTGTGCCAGG
TAGGTGCCTAAAGCCCTGCGCGGGTCATGCATGTTACCCTCTGCCGTTGA
GGATGTAATACACTTGCACATGGATTGGCGATGGTTGATGCTTCTTACCA
ACAGTATTCTATGATGGACAACGCCGCGTGCTACGTTACAAGATTGTCAG
CGAAGCCAGCAGTGAAGTTCATTTTTTGTATCCCGTGGTATATACACATA
TAGATGTGGATACATATACAAATTGGACTCTGGGAACTTCTGTTCCGAAA
TCTGAATCAGTAGGCTATCGGCCTCAAACAGCCAAAAAAAACTCAGTATG
AAGCAGCTGCTTTGAGCATGGCTGCACATGCCAGGAGACTGGACAGCTAT
TGTACCTGATGAGCACAGACCGACACAGCTCTGTTTGGTTCAAGGCAGCG
GCAGCACAGAAAAGAAGCAGTTGTTTGTTTGTTTCAGTATGCACAGCAGC
TGCTGCTTCGGTGCTCAAAACACAGCAGCAGCTGTTTTTGTCAGTTGTAA
ATTTAGGAGTACTTATGCTGCCTTCGCCTGTTTGCTCTGGTCTTGCATCA
CCCCCTGCCGCTGTGCTCTCATGAGCTCGTTCCGAAGGGGTATCTTGTAT
GTACATATGGTACATATTTACGCGTTGTTCTGGCTGTCTCCAACACCGTG
GTCACGTCGCGTTGGTTCGCCTTGCAGACGACTATGCTGGAGCGTGGAGC
CCCTATGGCAGACACCTTCACCGTGCTTGGCAGAGTGGTCCTCTCTCGCG
AACCAGGGCAGGGTCCAGATCGAGAGCCGCGGTGCCGAGTTCATATTGGA
TTCGATGTGGCGTTTCACAAGGTACATTACACACCAAAATTGCACCAGGA
ACGGAGGTTGGTTTTAGTCGGGTATGGGTGCCGCTTTATATGGTCGGAGC
CAACGGATTCTGGAGTATTCGTGTAGTGTGCAAACAGTAGCGAACCTCGC
TCCATGTGAACCATTGCTGTGAAGGGCCGCTGTAGCTGACACGATGGAGC
TCAACTCGCCCGCACACAAATTGTGACTCTCTGTGACTAATGTTCGCGCA
CTTTCGGCGTGATTTTTTTTTCTACGGTCCCTGGTAAAGTCGACGATGCT
TCGCGGCGCAATCCGTGCTGGTGCCCAAGAAGAGACAAGGTGAGAAAGTG
CTTTCGTCAACACGTAGTTACAGCAGTGGGGGTATCAACAAGCGAGGCAT
TCTCTCTCGAGGTTTGTATTGGTCGCTTTCCTCCCAGCGCTCCATACTGA
TGTTACATTCGTATTGGGTGTCAAATGTACCGTTTCTACCTCGCAGGAAT
TCATGGAAATCCTGGCTCCAAGCTACGAAGAAGGTTGTGCTGTACCAGCG
ACATCAGCTCGGCCAGAAAGCGGCCAATGACGGGGTCGCAGAAAACCCTC
CTGCGAACGTTTTCGCGCTTGCCAGGGACTTCAAAGCCGGGGCGGCGACA
AGTGCCGCGGGAAAAGTACCGCGTGCGGTTGAGGGCGAAGCGGCAGCAAA
AGCGCTACCGGGCGACATTGGTTGGGTCAACCTCATCGTGGGTACGGTGC
GCTGGCTTGTGGAGAGTGGACTTGCAGCGGTGAAATCAGCGGGTGTGCCG
ACTGTGCTGGCGCTGTTTTGTCTGTTGCTAGTGGCAAGGCAGCAGCGCGA
GGTACAGCGACTCACGACTCAGCTAGAGGAGATGTTGGAGGATTTGCGCT
TGGAGGGTTTGCGCAACAGAGTGGACGAGCAGATGATGGAACGGGAACTT
GGTTAGCAAATTGGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig69:25179..28193- >mRNA_L-elsbetiae_contig69.15664.1 ID=mRNA_L-elsbetiae_contig69.15664.1|Name=mRNA_L-elsbetiae_contig69.15664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2388bp|location=Sequence derived from alignment at L-elsbetiae_contig69:25179..28193- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCCAGCGGCTGCCACCGGTGCTGTGTCTCCAGCTTCGTTGGGAGA
CCGTTTTGTTGCCAGGGACGAGCGACCGGCGAGAAACGCACCTCCAGAGC
CCTCTGAGAGTGCCCCTGGCACAGCAATTTCCCGCGCTCTCGCTGTCGCG
ACCCGACCATGCGATAGCTTTGAGACCATGGTTGAAGCGGTTCTCCCCTG
CACGACCGCTCAGATGTCTCCAGCGGCTGCCACCGGTGCTGTGTCTCCAG
CTTCGTTGGGAGACCGTTTTGTTGCCAGGGACGAGCGACCGGCGAGAAAC
GCACCTCCAGAGCCCTCTGAGAGTGCCCCTGGCACAGCAATTTCCCGCGC
TCTCGCTGTCGCGACCCGACCATGCGATAGCTTTGAGACCATGGTTGAAG
CGGTTCTCCCCTGCACGACCGCTCAGGTGTTCGCTTGGGTTTGGGGACGG
CGTACGACGTTTTGGGAGGATTTCCTGCGTGCTCAGGGAGAAACTGGCCT
TGAGATTAATCAGTGGCGAGTGGCGGCAGTGGCGGCAGAGGCTAGAAGGA
GGCTGAGTGATCTGTTTCCTGGAGAAACTTTCGACGAGCAGCGGGAGCTG
ACCTTCACTCACCCTCGAACTGGGTTCGTCGTCGGTGTTCGCTTGGGTTT
GGGGACGGCGTACGACGTTTTGGGAGGATTTCCTGCGTGCTCAGGGAGAA
ACTGGCCTTGAGATTAATCAGTGGCGAGTGGCGGCAGTGGCGGCAGAGGC
TAGAAGGAGGCTGAGTGATCTGTTTCCTGGAGAAACTTTCGACGAGCAGC
GGGAGCTGACCTTCACTCACCCTCGAACTGGGTTCGTCGTCGGCCCCAAG
AAGGTTTTCACTCGCCAACAGCAGGGTTTCCGTGTGGAGCGGCGTAAGCG
CTCCTCAGGAGCTCGAACATCACAGGGAGTCACCCCGATGGACCGAGTCG
TTTTGTGCCAGGCCCCAAGAAGGTTTTCACTCGCCAACAGCAGGGTTTCC
GTGTGGAGCGGCGTAAGCGCTCCTCAGGAGCTCGAACATCACAGGGAGTC
ACCCCGATGGACCGAGTCGTTTTGTGCCAGACGACTATGCTGGAGCGTGG
AGCCCCTATGGCAGACACCTTCACCGTGCTTGGCAGAGTGGTCCTCTCTC
GCGAACCAGGGCAGGGTCCAGATCGAGAGCCGCGGTGCCGAGTTCATATT
GGATTCGATGTGGCGTTTCACAAGACGACTATGCTGGAGCGTGGAGCCCC
TATGGCAGACACCTTCACCGTGCTTGGCAGAGTGGTCCTCTCTCGCGAAC
CAGGGCAGGGTCCAGATCGAGAGCCGCGGTGCCGAGTTCATATTGGATTC
GATGTGGCGTTTCACAAGTCGACGATGCTTCGCGGCGCAATCCGTGCTGG
TGCCCAAGAAGAGACAAGTCGACGATGCTTCGCGGCGCAATCCGTGCTGG
TGCCCAAGAAGAGACAAGGAATTCATGGAAATCCTGGCTCCAAGCTACGA
AGAAGGTTGTGCTGTACCAGCGACATCAGCTCGGCCAGAAAGCGGCCAAT
GACGGGGTCGCAGAAAACCCTCCTGCGAACGTTTTCGCGCTTGCCAGGGA
CTTCAAAGCCGGGGCGGCGACAAGTGCCGCGGGAAAAGTACCGCGTGCGG
TTGAGGGCGAAGCGGCAGCAAAAGCGCTACCGGGCGACATTGGTTGGGTC
AACCTCATCGTGGGTACGGTGCGCTGGCTTGTGGAGAGTGGACTTGCAGC
GGTGAAATCAGCGGGTGTGCCGACTGTGCTGGCGCTGTTTTGTCTGTTGC
TAGTGGCAAGGCAGCAGCGCGAGGTACAGCGACTCACGACTCAGCTAGAG
GAGATGTTGGAGGATTTGCGCTTGGAGGGTTTGCGCAACAGAGTGGACGA
GCAGATGATGGAACGGGAACTTGGTTAGGAATTCATGGAAATCCTGGCTC
CAAGCTACGAAGAAGGTTGTGCTGTACCAGCGACATCAGCTCGGCCAGAA
AGCGGCCAATGACGGGGTCGCAGAAAACCCTCCTGCGAACGTTTTCGCGC
TTGCCAGGGACTTCAAAGCCGGGGCGGCGACAAGTGCCGCGGGAAAAGTA
CCGCGTGCGGTTGAGGGCGAAGCGGCAGCAAAAGCGCTACCGGGCGACAT
TGGTTGGGTCAACCTCATCGTGGGTACGGTGCGCTGGCTTGTGGAGAGTG
GACTTGCAGCGGTGAAATCAGCGGGTGTGCCGACTGTGCTGGCGCTGTTT
TGTCTGTTGCTAGTGGCAAGGCAGCAGCGCGAGGTACAGCGACTCACGAC
TCAGCTAGAGGAGATGTTGGAGGATTTGCGCTTGGAGGGTTTGCGCAACA
GAGTGGACGAGCAGATGATGGAACGGGAACTTGGTTAG back to top
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