mRNA_L-elsbetiae_contig6890.15652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: D8LKI8_ECTSI (Divergent RAB-like GTPase, N-terminal myristoylation predicted by ExPASy Myristoylator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI8_ECTSI) HSP 1 Score: 387 bits (993), Expect = 4.920e-127 Identity = 220/330 (66.67%), Postives = 250/330 (75.76%), Query Frame = 1 Query: 1 MGQAVSFCTSCCPCPSRRKGRGAAVPGAA-DGKTKLLSPSPSGKSPKALGKK-SKYRRPPSHLRELSGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCSGAQGESAGGFQ-EDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEEGSRCSSYPKRKGRKRLSVALRDKLGSANEGETASLCASHDGTGQS 981 MGQA S C+ CCPCP RRK AAVPGA + ++KLL S + K+ K +K SKYRRPPSHLRELSGDINQVVRLVLVGGC TGKTCLLRRFLGGYFD+ G QDYTRQA ITLGVDFGC+TVDL DRRVRLQMWDTGGSETYRSVVSHYLRGADGV+MCFDV+ K TLRSLRSTWAPFLDKHTPRTCR+LLAG KAD G G + G EDAKRFA+A+EAQVFETSAKLGTN+D AV+ALM+EVLHHR+FAA++KA + SS P R+GRKRLSV+L+ + + + AS CA+ G G+S Sbjct: 1 MGQAASCCSFCCPCPLRRKA--AAVPGATTEDQSKLLPSSSTKKAHKPRKEKCSKYRRPPSHLRELSGDINQVVRLVLVGGCDTGKTCLLRRFLGGYFDDIGHQDYTRQAQA---------------------ITLGVDFGCRTVDLADRRVRLQMWDTGGSETYRSVVSHYLRGADGVMMCFDVNSK-TLRSLRSTWAPFLDKHTPRTCRVLLAGNKADA-RGDFGVNGGEVSHEDAKRFAEAMEAQVFETSAKLGTNVDVAVMALMQEVLHHRQFAAEDKARSSKKGSS-PARRGRKRLSVSLKGVMERNGDRDIASSCAAQSGIGRS 304
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: A0A835YYU6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYU6_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.810e-27 Identity = 64/152 (42.11%), Postives = 80/152 (52.63%), Query Frame = 1 Query: 214 VRLVLVGGCATGKTCLLRRFLGGYF--DEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCS 663 VRLV+VG C GKT ++RR+L GYF D A Y+ TLGVDFGCKTV L +RVRLQ+WDT GS Y SVVSHYL ADGV + +D + + + ++ W P + + P R LL G K D S Sbjct: 5 VRLVMVGDCGVGKTAIMRRYLNGYFCGDTAKGTPYSS--------------------------TLGVDFGCKTVHLEGKRVRLQVWDTSGSARYGSVVSHYLHAADGVALVYDTTCAESFQRVQDYWLPLVKSYAPEAVRFLLVGNKCDLTS 130
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: H3GC27_PHYRM (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=H3GC27_PHYRM) HSP 1 Score: 115 bits (288), Expect = 1.370e-25 Identity = 74/232 (31.90%), Postives = 120/232 (51.72%), Query Frame = 1 Query: 190 LSGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPR-TCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEEGSRCSSYPKRKG 882 +S D + + +LVL+G GK+CLL RF GG + +Y AS+ AF + T+GVDF +TV + ++ V+LQ+WDT G E +R++ S Y RGADG+IM +DV+ + + + W ++++ TC++L+ G K+D ++ E AK FAD++ ETSAK N++ A L + E++ RE G++ + K G Sbjct: 1 MSRDYDHLFKLVLIGDSGVGKSCLLLRFAGGRLLDR-LTEYVADASQD------------DAFTESYITTIGVDFRFRTVKIDNKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFDHVND-WLNEVNRYASEGTCKLLV-GNKSDIS-----DNKAVSYETAKAFADSLSIPFLETSAKNAQNVEEAFLTMASELITIREMVGDSNRPAGTKLTENSKSGG 212
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: L0B2B3_THEEQ (Ras related Rab1a small GTP-binding protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0B2B3_THEEQ) HSP 1 Score: 108 bits (271), Expect = 1.600e-23 Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1 Query: 193 SGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEEGSRCSSY 867 S D + + +LVLVG GK+CLL RF F ++ + T+GVDF +T+ + D+RV+LQ+WDT G E +R++ S Y RGADG+++ +D++ K++ + S W +DK+ LL G K+D + + D KR ++ + V E SAK G N++ A ++ ++ + E++E SSY Sbjct: 6 SKDYDYLFKLVLVGDSGVGKSCLLLRFADDSFTDS------------------------------YITTIGVDFRFRTIKVNDKRVKLQIWDTAGQERFRTITSTYYRGADGIVLAYDLTDKSSFDHI-SDWLAEVDKYAAEDTCKLLVGNKSDIQENRDVDPS-----DVKRLSELVNIPVMEVSAKTGENVEKAFFSITERLVELKMKGEPEESENRISLSSY 194
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: A0A7S1R9U1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R9U1_ALECA) HSP 1 Score: 109 bits (272), Expect = 3.220e-23 Identity = 69/203 (33.99%), Postives = 101/203 (49.75%), Query Frame = 1 Query: 196 GDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREV 804 GD + + +LV++G GK+ LLRRF+ G +D YT T+GVDFG ++ L ++V+LQ+WDT GSE +R++ S Y RGA GVI+ FDVS + + +R W K P T R +L G K D GE +++A AD + + E SAK N++ A L+L R + Sbjct: 9 GDADFIFKLVVIGDLGVGKSALLRRFVDGLYDTT----YTA--------------------------TIGVDFGTRSCTLDGKKVKLQIWDTAGSERFRAITSSYYRGAHGVIVVFDVSDRKSFERVRY-WLAEAGKSAPVTARRMLVGNKCDLT----GEGRSISRDEAFDLADGLGVPLVEASAKSSENVEEAFLSLARAI 176
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: J4CDX6_THEOR (Rab GTPase n=2 Tax=Theileria orientalis TaxID=68886 RepID=J4CDX6_THEOR) HSP 1 Score: 107 bits (268), Expect = 5.210e-23 Identity = 67/208 (32.21%), Postives = 106/208 (50.96%), Query Frame = 1 Query: 190 LSGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPR-TCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLH 810 +S D + + +LVL+G GK+CLL RF F ++ + T+GVDF +TV + ++R++LQ+WDT G E +R++ S Y RGADG+IM +DV+ KA+ + W ++K+ TC++LL G K D S D +R ++ IE E SAK G NID A L++ ++++ Sbjct: 5 ISKDYDYLFKLVLIGDSGVGKSCLLLRFADDSFTDS------------------------------YITTIGVDFRFRTVIVNNKRIKLQIWDTAGQERFRTITSTYYRGADGIIMVYDVTDKASFEHIND-WLNEVNKYASEDTCKLLL-GNKCDIEDNRDVAST-----DVERLSEVIEVPAMEVSAKTGHNIDKAFLSITEKLVN 175
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: UPI00100E334F (ras-related protein Rab-8B-like n=1 Tax=Aphis gossypii TaxID=80765 RepID=UPI00100E334F) HSP 1 Score: 108 bits (270), Expect = 1.060e-22 Identity = 70/218 (32.11%), Postives = 105/218 (48.17%), Query Frame = 1 Query: 190 LSGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCSGAQGESAGGFQED-AKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKA 840 + GD + ++V G A GKTC + RF G F LG+ TLGVDF KT+ + DR V LQ+WDT G E +RS+ Y R ADGV++ +DV+ + + ++R W + + + + I + G K D A+ + D + A +A FETS+KLGTNI++A++ L RE+L + Q A Sbjct: 65 MGGDPERTYKIVFAGDAAVGKTCFIHRFCKGVFSSK--------------LGS----------------TLGVDFQMKTIRVDDRNVALQLWDTAGQERFRSITKAYFRRADGVVLLYDVTNERSFINIRQ-WVLSITEVSDKQLPICICGNKLDLRRDAELQGLTCVSTDHGELLAKDYDAAFFETSSKLGTNINNALITLCREMLIREDVEVQTSA 251
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: F0W1W0_9STRA (Rab1 family GTPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W1W0_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.080e-22 Identity = 71/230 (30.87%), Postives = 113/230 (49.13%), Query Frame = 1 Query: 190 LSGDINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPR-TCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEEGSRCSSYPKR 876 +S D + + +LVL+G GK+CLL RF D+A + Y + T+GVDF +TV + + ++LQ+WDT G E +R++ S Y RGADG+IM +DV+ + + + W ++++ TC++L+ G K+D ES E AK FAD++ ETSAK N++ A L + E++ RE G+ S +R Sbjct: 1 MSKDYDHLFKLVLIGDSGVGKSCLLLRFA----DDAFTESY--------------------------ITTIGVDFRFRTVRIDKKTIKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTNQESFDHVND-WLNEVNRYASEGTCKLLV-GNKSDIT-----ESRAVTYETAKAFADSLSIPFLETSAKNAQNVEEAFLTMASELITIREMLGDANRPRGTSLSEEARR 193
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: A0A6V1NVS4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NVS4_HETAK) HSP 1 Score: 107 bits (267), Expect = 1.180e-22 Identity = 73/228 (32.02%), Postives = 119/228 (52.19%), Query Frame = 1 Query: 199 DINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPR-TCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEE-----GSRCSS 864 D + + +LVL+G GK+CLL RF D+A + Y + T+GVDF KTV + + V+LQ+WDT G E +R++ S Y RGADG+IM +DV K + + S W ++++ TC++L+ G K+D A ++ E+AK++AD + ETSAK +N++ A L + +++ RE ++++ + GSR SS Sbjct: 30 DYDHLFKLVLIGDSGVGKSCLLLRFA----DDAFTESY--------------------------ISTIGVDFRFKTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVMNKESFEHV-SAWLSEVNRYANEGTCKLLV-GNKSDRAEEAP-DARQVAAEEAKKYADDLGIPFIETSAKSASNVEEAFLTMASQLIQLREARGEDESMKPAVTLGSRQSS 224
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Match: A0A835Z965_9STRA (Rab1A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z965_9STRA) HSP 1 Score: 106 bits (264), Expect = 1.620e-22 Identity = 70/228 (30.70%), Postives = 109/228 (47.81%), Query Frame = 1 Query: 199 DINQVVRLVLVGGCATGKTCLLRRFLGGYFDEAGQQDYTRQASRQITLGTISIAAFRPAFRPILLITLGVDFGCKTVDLGDRRVRLQMWDTGGSETYRSVVSHYLRGADGVIMCFDVSRKATLRSLRSTWAPFLDKHTPRTCRILLAGTKADCCSGAQGESAGGFQEDAKRFADAIEAQVFETSAKLGTNIDSAVLALMREVLHHREFAAQEKAEEGSRCSSYPKRKG 882 D + + +LVL+G GK+CLL RF D+A Y + T+GVDF +TV + + V+LQ+WDT G E +R++ S Y RGADG+IM +DV+ + + + W ++++ LL G K+D A E AK FA ++ ETSAK +N++ A L + E++ RE A ++AE ++ R G Sbjct: 5 DYDHLFKLVLIGDSGVGKSCLLLRFA----DDAFTDSY--------------------------ISTIGVDFRFRTVKIDKKTVKLQIWDTAGQERFRTITSAYYRGADGIIMVYDVTSQESFGHVND-WLSEVNRYASEGTSKLLIGNKSDRADKAV------TTEQAKSFAQSLGIPFLETSAKSASNVEEAFLTMASELIRTREARAAQQAESSGTAATVQLRPG 195 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6890.15652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6890.15652.1 >prot_L-elsbetiae_contig6890.15652.1 ID=prot_L-elsbetiae_contig6890.15652.1|Name=mRNA_L-elsbetiae_contig6890.15652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=655bp MGQAVSFCTSCCPCPSRRKGRGAAVPGAADGKTKLLSPSPSGKSPKALGKback to top mRNA from alignment at L-elsbetiae_contig6890:2256..9881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6890.15652.1 ID=mRNA_L-elsbetiae_contig6890.15652.1|Name=mRNA_L-elsbetiae_contig6890.15652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7626bp|location=Sequence derived from alignment at L-elsbetiae_contig6890:2256..9881- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6890:2256..9881- >mRNA_L-elsbetiae_contig6890.15652.1 ID=mRNA_L-elsbetiae_contig6890.15652.1|Name=mRNA_L-elsbetiae_contig6890.15652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3930bp|location=Sequence derived from alignment at L-elsbetiae_contig6890:2256..9881- (Laminarionema elsbetiae ELsaHSoW15)back to top |