mRNA_L-elsbetiae_contig6887.15647.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6887.15647.1
Unique NamemRNA_L-elsbetiae_contig6887.15647.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6887.15647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6887contigL-elsbetiae_contig6887:6863..9274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog2880.D7G4X8
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1253
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6887.15647.1prot_L-elsbetiae_contig6887.15647.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6887 7342..9247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.1560595-UTR-L-elsbetiae_contig6887:6862..73411622816762.1560595-UTR-L-elsbetiae_contig6887:6862..7341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6887 6863..7341 -
1691683794.1582804-UTR-L-elsbetiae_contig6887:6862..73411691683794.1582804-UTR-L-elsbetiae_contig6887:6862..7341Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6887 6863..7341 -
1622816762.2016995-UTR-L-elsbetiae_contig6887:9247..92741622816762.2016995-UTR-L-elsbetiae_contig6887:9247..9274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6887 9248..9274 -
1691683794.2017984-UTR-L-elsbetiae_contig6887:9247..92741691683794.2017984-UTR-L-elsbetiae_contig6887:9247..9274Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6887 9248..9274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816762.1695194-CDS-L-elsbetiae_contig6887:7341..74541622816762.1695194-CDS-L-elsbetiae_contig6887:7341..7454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 7342..7454 -
1691683794.1728156-CDS-L-elsbetiae_contig6887:7341..74541691683794.1728156-CDS-L-elsbetiae_contig6887:7341..7454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 7342..7454 -
1622816762.1807203-CDS-L-elsbetiae_contig6887:7880..80961622816762.1807203-CDS-L-elsbetiae_contig6887:7880..8096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 7881..8096 -
1691683794.1824832-CDS-L-elsbetiae_contig6887:7880..80961691683794.1824832-CDS-L-elsbetiae_contig6887:7880..8096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 7881..8096 -
1622816762.1906657-CDS-L-elsbetiae_contig6887:8829..92471622816762.1906657-CDS-L-elsbetiae_contig6887:8829..9247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 8830..9247 -
1691683794.192073-CDS-L-elsbetiae_contig6887:8829..92471691683794.192073-CDS-L-elsbetiae_contig6887:8829..9247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6887 8830..9247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6887.15647.1

>prot_L-elsbetiae_contig6887.15647.1 ID=prot_L-elsbetiae_contig6887.15647.1|Name=mRNA_L-elsbetiae_contig6887.15647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MANVTHKKRCSYHGCTTRPSYGKAGSKAEYCCGHAENGMASVSRRCAHGD
CGRLSTFGLAGSGNVEFCEGHAKRGMLNLRSVSNRRPSTGGRGGGSSSTA
VGDSAARRAGAGEKRGRSGARSSAANDTHDSSLDPTKARGRRKRRRGAIA
GVAGATAARIAEEEDEKAAVSTSADGDEAATAKMPGAAEVLTRVALSCKT
EPEPMEGGEGGGPSSGQSLSCGAPVSAGCGAPVGVACKQEPITDHTDA*
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mRNA from alignment at L-elsbetiae_contig6887:6863..9274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6887.15647.1 ID=mRNA_L-elsbetiae_contig6887.15647.1|Name=mRNA_L-elsbetiae_contig6887.15647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2412bp|location=Sequence derived from alignment at L-elsbetiae_contig6887:6863..9274- (Laminarionema elsbetiae ELsaHSoW15)
TACTGCCGTGACCATGCCGAGGACGGGATGGCGAACGTGACACACAAGAA
GAGATGCTCCTACCACGGTTGTACGACGCGGCCGTCATACGGCAAGGCTG
GCAGCAAGGCGGAGTACTGCTGTGGCCATGCCGAGAACGGGATGGCGAGT
GTGAGCAGGAGGTGTGCCCACGGCGACTGCGGCAGGCTGTCGACGTTCGG
GTTGGCAGGGAGCGGGAATGTTGAGTTCTGCGAAGGTCACGCCAAGCGGG
GCATGTTAAACCTACGCAGTGTTTCCAACAGGAGGCCCTCCACCGGCGGC
AGGGGTGGTGGAAGCAGCTCGACAGCGGTCGGTGATAGTGCGGCCCGCCG
TGCTGGTGCTGGCGAAAAGCGGGGAAGAAGCGGCGCTCGTTCATCGGCAG
CGAATGATACGCACGACAGCAGCTTGGATCCCACTAAAGCTAGAGGTACA
TACGTCCCCGAAAAAGCAAATGCATGAAACCAGTATTTAGTATTATCTGT
AGATTTTTATTTTTGGTGCCTGGGATGCGGGTTGCGCCCTCGGCTGTGTT
CGCTGGCGATACTTTCCCCCTTGCGTTGAGAACCCATACCGTCCTGTATG
CACTCATGTCGAAAGTGCCGTAAACCCAATTACAGCGCTTCTGCCAACGG
CGCTTATTCCTTTGTGCCCATCTGCGGTGCTATCGTTTTGTTGGAGGGCG
AACAGGGTGTTGCCCTGCTGGCTAGACGTGCACACACCGCGGCTTTGGTA
AGGAAGTCAACCTCGCATGGCCCCGTCGAGGGGCACTACTTGTGGATGGA
GCACTCTGGCTGCTGCTTCGTCTGAGCCCCAACCCGTTGTGTACCCGTGT
GCGCGCCATTCGGTGCTTCCTGCTTGACACCGCAACGTTTGGCATCTGTT
TTGTGATTTGCTCGTGCCATGAAAGGCGCACTCTTTGTGCTCGATACCCT
TGAGGCAGTTGGGCACGATGCGCTTGTAGATGGTTCAGTTTTTGGAACCT
GCCTTTTGGGCGCTTGCGGTCGTGGCACAAAAGCGCAACCGCATCCCCGG
AAAACGCCGCTGCTTCAGTGAGGGCCGGGCTTAGACATTAGCTGTTCGTC
CTGCCTCGGTGCTTCCTCCCGAAATGCCCTCGCTCTCTCTCTGACGACGA
CATCGTTTCGCGGCGGTGGCGAGAGCAGGTCGGAGGAAGAGGAGAAGAGG
GGCCATCGCAGGCGTAGCAGGCGCGACTGCAGCGAGGATCGCGGAAGAAG
AAGACGAAAAAGCCGCGGTCTCCACGAGCGCCGATGGTGATGAGGCCGCC
ACTGCCAAAATGCCAGGCGCTGCAGAAGTCCTGACGAGAGTGGCGCTCTC
CTGCAAAACTGAGCCTGAGCCCATGGAGGGAGGGGAGGGTGGAGGTGCGG
TAGAGCCAGAGTGCGCGGGTATTCTATGTGGTAGGACGTTGTTTCTCTGC
AATAGCCGTTCTCCAAATAATCTTTGGTGAAAAAGGAATTTTGCCATTTT
TCACCTCGTTTTCCTCGTGTGTGGAGTTTTGAGGGGAGAGCAAGGACCAA
TTGGTTTGATGCTGTGTTCGAGTTCCGTCGGTGTAACAAGCCTGCACGCA
CCACGGAATAGCTTGACCTGCGCTTTCGTGAGGTGCTCCTTGCCGACTTC
TTGCTCTACCGTCCGGCATGCAGCGGCTGAAATAGTGACTCAAATGTGTG
ACTGAATCAGCGTCAGTGGAGTTGTTTTGATGGGCCGAAAGCACGCATGT
ATGTGTGTATGTTGGAGCGCCGTCGCTAACGCCAAACCTCCTCACGTCGA
CCTCGATTTTTTTTGCCCAGGCCCGTCCTCGGGGCAATCTCTGTCTTGCG
GTGCCCCTGTGTCTGCCGGGTGTGGCGCGCCAGTGGGAGTCGCTTGCAAG
CAGGAGCCCATCACGGACCATACGGATGCGTGACGATTTCCTCCAAGACC
CTGCGTTTTGGTGTGTGTGTGTATGTTTTTTGTTTTTTAAGTTAGTTGGC
GAGGCGGGTACTGAAAATCTCGACTCTGCGGACTATTAGTCTATTTGGGT
ATGCTGTTGGGGATGGTACTTGAGTATCTGGTGTGTTGTCAGGCATGGAA
GTCTGAAACTCGTTGTGTTTGGAAGATGAAAACCTCCTCCGTTGATCATA
ATTTGCCCTCCCAGTGTTTCTGTGTTACGGTGAAGTTACGACACGGCTCG
GGTTGCTTCTAGTGGCTCTGAACCAAGATTTTATGAGTCGGTCAACCGTA
TGTATGATAGTGGAAAATTTGCATGTGATCAAAACAGCTACCTTGTACCA
GTCACCCCGAGGTATGAAGGCTCTTTATCCAAGGGTGCATATGTATATCT
AGTCTATATATTTTTGAGTCCTGCACGTGCTTGCGCGAGACGTTGGGCAC
TCAACGAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6887:6863..9274-

>mRNA_L-elsbetiae_contig6887.15647.1 ID=mRNA_L-elsbetiae_contig6887.15647.1|Name=mRNA_L-elsbetiae_contig6887.15647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig6887:6863..9274- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACGTGACACACAAGAAGAGATGCTCCTACCACGGTTGTACGAC
GCGGCCGTCATACGGCAAGGCTGGCAGCAAGGCGGAGTACTGCTGTGGCC
ATGCCGAGAACGGGATGGCGAGTGTGAGCAGGAGGTGTGCCCACGGCGAC
TGCGGCAGGCTGTCGACGTTCGGGTTGGCAGGGAGCGGGAATGTTGAGTT
CTGCGAAGGTCACGCCAAGCGGGGCATGTTAAACCTACGCAGTGTTTCCA
ACAGGAGGCCCTCCACCGGCGGCAGGGGTGGTGGAAGCAGCTCGACAGCG
GTCGGTGATAGTGCGGCCCGCCGTGCTGGTGCTGGCGAAAAGCGGGGAAG
AAGCGGCGCTCGTTCATCGGCAGCGAATGATACGCACGACAGCAGCTTGG
ATCCCACTAAAGCTAGAGATGGCGAACGTGACACACAAGAAGAGATGCTC
CTACCACGGTTGTACGACGCGGCCGTCATACGGCAAGGCTGGCAGCAAGG
CGGAGTACTGCTGTGGCCATGCCGAGAACGGGATGGCGAGTGTGAGCAGG
AGGTGTGCCCACGGCGACTGCGGCAGGCTGTCGACGTTCGGGTTGGCAGG
GAGCGGGAATGTTGAGTTCTGCGAAGGTCACGCCAAGCGGGGCATGTTAA
ACCTACGCAGTGTTTCCAACAGGAGGCCCTCCACCGGCGGCAGGGGTGGT
GGAAGCAGCTCGACAGCGGTCGGTGATAGTGCGGCCCGCCGTGCTGGTGC
TGGCGAAAAGCGGGGAAGAAGCGGCGCTCGTTCATCGGCAGCGAATGATA
CGCACGACAGCAGCTTGGATCCCACTAAAGCTAGAGGTCGGAGGAAGAGG
AGAAGAGGGGCCATCGCAGGCGTAGCAGGCGCGACTGCAGCGAGGATCGC
GGAAGAAGAAGACGAAAAAGCCGCGGTCTCCACGAGCGCCGATGGTGATG
AGGCCGCCACTGCCAAAATGCCAGGCGCTGCAGAAGTCCTGACGAGAGTG
GCGCTCTCCTGCAAAACTGAGCCTGAGCCCATGGAGGGAGGGGAGGGTGG
AGGTCGGAGGAAGAGGAGAAGAGGGGCCATCGCAGGCGTAGCAGGCGCGA
CTGCAGCGAGGATCGCGGAAGAAGAAGACGAAAAAGCCGCGGTCTCCACG
AGCGCCGATGGTGATGAGGCCGCCACTGCCAAAATGCCAGGCGCTGCAGA
AGTCCTGACGAGAGTGGCGCTCTCCTGCAAAACTGAGCCTGAGCCCATGG
AGGGAGGGGAGGGTGGAGGCCCGTCCTCGGGGCAATCTCTGTCTTGCGGT
GCCCCTGTGTCTGCCGGGTGTGGCGCGCCAGTGGGAGTCGCTTGCAAGCA
GGAGCCCATCACGGACCATACGGATGCGTGAGCCCGTCCTCGGGGCAATC
TCTGTCTTGCGGTGCCCCTGTGTCTGCCGGGTGTGGCGCGCCAGTGGGAG
TCGCTTGCAAGCAGGAGCCCATCACGGACCATACGGATGCGTGA
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