mRNA_L-elsbetiae_contig6884.15644.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6884.15644.1
Unique NamemRNA_L-elsbetiae_contig6884.15644.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6884.15644.1 vs. uniprot
Match: A0A6H5L6H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6H0_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.940e-12
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 3 
Query:  396 IAAKAKVVSAGVRRHASRQVQEIKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVQAEIQGLWDCMRKHFPVVRSHVAAEVETKIVETEETIRAIQDEPNRKLSFIKSVGGLA 809
            I+AKAK V+AGVRR+AS++V E ++                                                     KVQA ++ L DCMR+HF VVRSH+  +V +K+ +TEE + AI  +P++ LS I+  GGL+
Sbjct:   17 ISAKAKAVAAGVRRNASKRVDEARAGQNKLATELRSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARVKLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDKTLSLIRRAGGLS 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6884.15644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6H0_9PHAE7.940e-1232.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6884contigL-elsbetiae_contig6884:5582..9907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006340.1
Exons7
Model size1520
Cds size705
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.9284723-UTR-L-elsbetiae_contig6884:5581..56881622816761.9284723-UTR-L-elsbetiae_contig6884:5581..5688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6884 5582..5688 +
1691683794.0030096-UTR-L-elsbetiae_contig6884:5581..56881691683794.0030096-UTR-L-elsbetiae_contig6884:5581..5688Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6884 5582..5688 +
1622816762.0275733-UTR-L-elsbetiae_contig6884:9199..99071622816762.0275733-UTR-L-elsbetiae_contig6884:9199..9907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6884 9200..9907 +
1691683794.102723-UTR-L-elsbetiae_contig6884:9199..99071691683794.102723-UTR-L-elsbetiae_contig6884:9199..9907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6884 9200..9907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.939866-CDS-L-elsbetiae_contig6884:5688..57021622816761.939866-CDS-L-elsbetiae_contig6884:5688..5702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 5689..5702 +
1691683794.020884-CDS-L-elsbetiae_contig6884:5688..57021691683794.020884-CDS-L-elsbetiae_contig6884:5688..5702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 5689..5702 +
1622816761.9510782-CDS-L-elsbetiae_contig6884:6112..63171622816761.9510782-CDS-L-elsbetiae_contig6884:6112..6317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 6113..6317 +
1691683794.0368137-CDS-L-elsbetiae_contig6884:6112..63171691683794.0368137-CDS-L-elsbetiae_contig6884:6112..6317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 6113..6317 +
1622816761.9651053-CDS-L-elsbetiae_contig6884:7034..71101622816761.9651053-CDS-L-elsbetiae_contig6884:7034..7110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7035..7110 +
1691683794.049671-CDS-L-elsbetiae_contig6884:7034..71101691683794.049671-CDS-L-elsbetiae_contig6884:7034..7110Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7035..7110 +
1622816761.9758193-CDS-L-elsbetiae_contig6884:7439..75361622816761.9758193-CDS-L-elsbetiae_contig6884:7439..7536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7440..7536 +
1691683794.0649529-CDS-L-elsbetiae_contig6884:7439..75361691683794.0649529-CDS-L-elsbetiae_contig6884:7439..7536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7440..7536 +
1622816761.9892788-CDS-L-elsbetiae_contig6884:7941..80531622816761.9892788-CDS-L-elsbetiae_contig6884:7941..8053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7942..8053 +
1691683794.074016-CDS-L-elsbetiae_contig6884:7941..80531691683794.074016-CDS-L-elsbetiae_contig6884:7941..8053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 7942..8053 +
1622816761.9989808-CDS-L-elsbetiae_contig6884:8436..85601622816761.9989808-CDS-L-elsbetiae_contig6884:8436..8560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 8437..8560 +
1691683794.0830343-CDS-L-elsbetiae_contig6884:8436..85601691683794.0830343-CDS-L-elsbetiae_contig6884:8436..8560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 8437..8560 +
1622816762.0104086-CDS-L-elsbetiae_contig6884:9122..91991622816762.0104086-CDS-L-elsbetiae_contig6884:9122..9199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 9123..9199 +
1691683794.0928357-CDS-L-elsbetiae_contig6884:9122..91991691683794.0928357-CDS-L-elsbetiae_contig6884:9122..9199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6884 9123..9199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6884.15644.1prot_L-elsbetiae_contig6884.15644.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6884 5689..9199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6884.15644.1

>prot_L-elsbetiae_contig6884.15644.1 ID=prot_L-elsbetiae_contig6884.15644.1|Name=mRNA_L-elsbetiae_contig6884.15644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MEIPCMPQLPVLDKRPADGGGGGGGGISESKTPFQLSQLDLGSIGVTKRP
GGRKRAAASAALDDDEDPLEEAQLVQLLQQMQKLKQSKENKRRKAAIAAK
AKVVSAGVRRHASRQVQEIKSNQAKRAAEVRSAMESLRKGLEEEAKLAST
LREENTKAAKEAIDTLKERYDEVAKVQAEIQGLWDCMRKHFPVVRSHVAA
EVETKIVETEETIRAIQDEPNRKLSFIKSVGGLA*
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mRNA from alignment at L-elsbetiae_contig6884:5582..9907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6884.15644.1 ID=mRNA_L-elsbetiae_contig6884.15644.1|Name=mRNA_L-elsbetiae_contig6884.15644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4326bp|location=Sequence derived from alignment at L-elsbetiae_contig6884:5582..9907+ (Laminarionema elsbetiae ELsaHSoW15)
GTCGCCTGTCGCCTTCGTCTCTCTTCCCGCCTCCACACACACTCGCCCCC
CCTACCCCAACCGTTTCCCTCTGCTTCAGCAGCCGCATACGCCATAGTTT
CTTCGCGATGGAAATCCCCTGGTCAGTCAACTTGGGTCATGGGTCAGTCG
TCGGTCTGAAACCGCACTCATGTGTGTATCTACCAATAGTCTCATAGTCG
ACCTCGCCCCCCCTTTGCCCCTGGGTACCACCCATACATATAGCATTGTG
CCGGGAGATTATTTCAATCTCTCTTGAACTTCAGTCGGAGCGTTTACTTT
GCTTCATCTCCTCCCCTGTTGGAGAGTTTGAGGGATGCGATGAAAACCTG
GCGAACGAGGCAGATCGCTCCTCGGTTCACCTCGCGGGGTCGTGTGCTGT
AAACGGCACACCAGTAGATAGATATGCCGTACTCTCTTGAGAGTGAAACG
CTGTCGAACTACGTGCCTATCTGTAATATCTACAATGGACCATCGACGAT
CTGTTTCTCCTTTTCACCATCATCGCGGCAGCATGCCCCAGCTGCCCGTA
CTGGACAAGCGGCCCGCCGATGGTGGTGGTGGTGGAGGCGGCGGTATTTC
GGAGTCGAAGACCCCTTTCCAACTCTCCCAGCTGGATCTTGGCAGCATCG
GTGTCACCAAGAGGCCTGGCGGCAGGAAGAGAGCAGCGGCTTCTGCTGCC
CTGGACGATGATGAGGATCCGCTTGAGGAAGCTCAGGTCACTCTAATTAA
TGTTGTTACTTTAGGCCCACGCGACGGACTGCGAAACTTCAAAAGTTGCT
GCGCTGTGCACGCGCTTGGCCTCGTGTAGACTTCCATCTCGAGCAGGCGT
TTTGTTAACACTTTGCGGCCTGAAAAGGCCAACGCTTTTCCTTGCTGAAC
CCAGGGGCATGCCTAGTGAAAGAGCTACAGGATGCATCCCTGGTTGGAGG
CTTTCAAAGAAAGACCTGCGAAGACACACTTTGTAGCGACAAGACCTGGA
ACCCACTTTTTGTGTTTAAAATGGCAAGAGAGGGCTGAGCGCATCTCATA
CATAATGTTTCTTCAAACCATGCTGTTGCTCAACCTCGCATCGTATCCAC
TTTGACGGAAGCTTGGTTAGATAAAGCACGGACTTCTCATGTATTTGAAG
CAGGAACCTCTCTTATTAGTATGTTCTCCTTCAGGGAAGCTCACTCGAAG
CATCCACTTCACGCACACCGCGTGACACACGCGAACATCCCGCATCGCGT
CTGTGAAGCGTCTGTGAATGTTGTCTTCGGTGTGCCTACATATGATGTGA
ACTTATGTAGAGACGGCGCCACCTCGAATTCGAAACAACACATACGCCAC
ACACGACCTGAGAGCAACAACAACCGAAGGCCGGCCGAACTCCCAGATTC
AAGCCCACCCCGTCTCCGTCCCGCCCGGCTGCCCTGTCTCCCCCCTCTTG
TAGCTGGTGCAGCTGCTGCAACAGATGCAGAAGCTGAAGCAGAGCAAGGA
AAACAAGCGTAGGAAGGCCGCGATAGCAGGTGACACTGCTGCCATATTTA
GTGAAAACGAGCCCATACAGTACGCTCAAGAGGAAAAGCATAAAGGCGTT
GTGTATCGAAACATTTGGGCAGAATACCCTTTGAACACTCTCGCATCAAG
ACCCGCCTGCAGCCCAACCGGGACGTTATTTCTTGGTAGGTCCCCTGCAA
CGCCGTTGCACAAGTACGGTACCCCTCTTTCCACAATGATAGCTGTTTTA
GAACCCTAGGCTTGTCATCCAAGCTTTCCCAACTACTTTTGTTTTTCCCT
TGCTAATTCCGGCACAATCACCCTCCTCGTGTTTTTTTGTCGATTCTGTG
CTGCCCAGCGAAAGCCAAAGTGGTGAGTGCCGGGGTCCGACGGCACGCCT
CCAGGCAAGTCCAGGAGATCAAGTCCAACCAAGCCAAGAGGGCCGCAGAA
GTCAGGTGATGCAAGAACACACTTCCATTCCACGGAACGGAAGGAAGCGT
GCTGCTGATGAAGTTAAAGAGGAAGTGTGCAACTCGGTGTCTGTCGCGTT
TTGTGCCAGGCGGTGCATGGAGAGGTGTGCCGGCCTGCGACTTCCTTCCC
CGGGTGGTCGGCTTCATGCAACGCTTTGTACGGCATCTCTCGTTTTTGCA
CATGCAAAAGGCAGATCGAAAGGCGTTTGTCGCGCGTGTACGCGCGGGCG
GGTCGGCACATCTACATTCGGAGCTATGTATGTATGTATGTATGTATGTA
TGTATGTATGTATGTATGTATGTAGCGACACATGTTCCGTGTTACCCTTT
CATCAATCGATCGATGATGAAGGTGATGGATGACAATGATGGTGATATTG
CCGGCTGCAGGTCTGCCATGGAGTCGTTGCGCAAAGGTCTCGAAGAGGAG
GCAAAACTCGCTTCCACCCTTCGCGAAGAGAACACAAAGGCCGCGAAGGA
GGCCATCGATACCCTCAAAGAGGCAAGCTTTGATGTGACACTCGCTAACA
CTACATACCTGGCCCGGTCATTCAGTTTATAGATGACCTAGGGCTCGTAA
GTTACCCGAGGCTGCTTCCTTGGTTTTTGTTTTTTTCAGCTGTGTGTCTC
CGAGCACAACAGAGGACGGAGACAATAGGCGGTTGAAAGCGCGACAAGAG
GATGGACGGGTTCTAGATAGACGTACCTTGACACTACCGGACCCTGTCAT
CAAACCACCGCCGCTCCCGGCTGAGGAGAACGCTGCCAGTTGGCGTTACG
TCAAAGGGGGCTCTGGGGCGAGTTCGTTTGCTTTCGTCGGGCTTACATAA
GTGACTGGGAGATCTCTGACTCCCCTTCGGCCGCTCGCTGTGCGCTGCCT
GGCAGAGGTATGATGAGGTTGCCAAGGTGCAGGCCGAGATCCAGGGCCTG
TGGGACTGCATGCGGAAGCACTTCCCGGTGGTGCGCAGCCACGTCGCGGC
CGAAGTGGAAACGAAGATTGTCGAAACGGGTGAGTCCTCGCGTCCGGGTC
CTCTCTATTCCTACGTCCTGCTGTGCGCACGGGTGGGTGTGGTTGTCTGG
AAGACCGGCCATTTTTCGTTATCAAGGTGTTTGTACTTGTATATAGTCAT
GATCACGTCCGCTTTGATGAACAGGTACTTCGTGCACCCCCCCTCTCCTA
CATAGTCGTTTATGCATGTGACCACCAGGAATGCCACGCTGTTGGGTCCG
CCATGTGACCGGCTAGCGATCTGTACTGCGAGGCGAAGGTAGACTAGCGA
ACTCGCAAGATACCACCCCCACATAACATCTCGCAAACCCGGCGTTTACA
TTTTTTCAGCTCAAAAGGCACCCAATATATATGTGTAATGTGCAGGAACT
TTTCAGATCAAGTGTTCTGGGTACAAAAAATATCACCCCCCCCCCCCTCC
CCACAGAGTATCATACGTGGTATTTACAAACGCTTACATGGTATGTTATC
ACCGGGGATGGCGCATATTGTGGTCACACGGCATGCCCACTGTTGAGCTT
TGTTTCCGCGACCCTACACTTCGATTCGTGCCTACCAATAGAGGAGACTA
TCCGAGCTATACAAGACGAGCCCAACAGGAAGCTCAGCTTCATCAAGAGC
GTGGGCGGCTTGGCTTGAAAAGGGGGCTAGAGGGCAAGATGCCCTGGTGG
TCGCCCAACATCCAGTCGACGTGCGCAGCGTGGAGGGGAATCTGACTTAT
TGTGTGTGTGCAAACCTGCGCCGCCGAAAGTGCACCAAGCGCCACGACTA
CGCTGCCGAAGTTCCACAGTGGCCTCGTCGTGCAAAGACGATGCCGGTTA
GTTACTCAAGAAGGAGTATACTCAACCCCCGGATACGCGGCAGCCGAGTG
CCCAAGAGGAAAAGTGGGCGGTAGTCAATTGTTTTTCCTGCCTACAAGCG
TGCGCACTTTTTCGCATCAATAGCCGAGAACAGTAGTCGTGCAGAAGTGG
GCCTTAGCAGCGGCAGAAGTCGAAATGCAGCTATCTATGTAAAGTGGAGC
ACGTTGTATGAAAATGACTTTGGCAGTTTCTCGTTGGGAACGAAGTACGT
ACGACCACTAGACTCTAGTACCTGGTACTTAGTTGTTTCTGTGTCTGTTC
TCGCGCATACATGACGTGCAAACCATGGAGGACTTCGATTTTATTCACAA
GCACATATCATATCTAGATTACTGGCGAACCTCACCCGACATGTGAATGA
ATGAAGATATTATTGCGTCGAAGTGTGAAAACAGGAGGAATCCATGGCCA
GGTAGCCTGGTAATAATTTACATACTGTTCAAGAAGTGATGTCTTATCTA
TCGTAGAAGATAGACATATATGCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6884:5582..9907+

>mRNA_L-elsbetiae_contig6884.15644.1 ID=mRNA_L-elsbetiae_contig6884.15644.1|Name=mRNA_L-elsbetiae_contig6884.15644.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig6884:5582..9907+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAATCCCCTGATGGAAATCCCCTGCATGCCCCAGCTGCCCGTACTG
GACAAGCGGCCCGCCGATGGTGGTGGTGGTGGAGGCGGCGGTATTTCGGA
GTCGAAGACCCCTTTCCAACTCTCCCAGCTGGATCTTGGCAGCATCGGTG
TCACCAAGAGGCCTGGCGGCAGGAAGAGAGCAGCGGCTTCTGCTGCCCTG
GACGATGATGAGGATCCGCTTGAGGAAGCTCAGCATGCCCCAGCTGCCCG
TACTGGACAAGCGGCCCGCCGATGGTGGTGGTGGTGGAGGCGGCGGTATT
TCGGAGTCGAAGACCCCTTTCCAACTCTCCCAGCTGGATCTTGGCAGCAT
CGGTGTCACCAAGAGGCCTGGCGGCAGGAAGAGAGCAGCGGCTTCTGCTG
CCCTGGACGATGATGAGGATCCGCTTGAGGAAGCTCAGCTGGTGCAGCTG
CTGCAACAGATGCAGAAGCTGAAGCAGAGCAAGGAAAACAAGCGTAGGAA
GGCCGCGATAGCAGCTGGTGCAGCTGCTGCAACAGATGCAGAAGCTGAAG
CAGAGCAAGGAAAACAAGCGTAGGAAGGCCGCGATAGCAGCGAAAGCCAA
AGTGGTGAGTGCCGGGGTCCGACGGCACGCCTCCAGGCAAGTCCAGGAGA
TCAAGTCCAACCAAGCCAAGAGGGCCGCAGAAGTCAGCGAAAGCCAAAGT
GGTGAGTGCCGGGGTCCGACGGCACGCCTCCAGGCAAGTCCAGGAGATCA
AGTCCAACCAAGCCAAGAGGGCCGCAGAAGTCAGGTCTGCCATGGAGTCG
TTGCGCAAAGGTCTCGAAGAGGAGGCAAAACTCGCTTCCACCCTTCGCGA
AGAGAACACAAAGGCCGCGAAGGAGGCCATCGATACCCTCAAAGAGGTCT
GCCATGGAGTCGTTGCGCAAAGGTCTCGAAGAGGAGGCAAAACTCGCTTC
CACCCTTCGCGAAGAGAACACAAAGGCCGCGAAGGAGGCCATCGATACCC
TCAAAGAGAGGTATGATGAGGTTGCCAAGGTGCAGGCCGAGATCCAGGGC
CTGTGGGACTGCATGCGGAAGCACTTCCCGGTGGTGCGCAGCCACGTCGC
GGCCGAAGTGGAAACGAAGATTGTCGAAACGGAGGTATGATGAGGTTGCC
AAGGTGCAGGCCGAGATCCAGGGCCTGTGGGACTGCATGCGGAAGCACTT
CCCGGTGGTGCGCAGCCACGTCGCGGCCGAAGTGGAAACGAAGATTGTCG
AAACGGAGGAGACTATCCGAGCTATACAAGACGAGCCCAACAGGAAGCTC
AGCTTCATCAAGAGCGTGGGCGGCTTGGCTTGAAGGAGACTATCCGAGCT
ATACAAGACGAGCCCAACAGGAAGCTCAGCTTCATCAAGAGCGTGGGCGG
CTTGGCTTGA
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