mRNA_L-elsbetiae_contig6880.15639.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6880.15639.1
Unique NamemRNA_L-elsbetiae_contig6880.15639.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6880.15639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6880contigL-elsbetiae_contig6880:4816..5534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size719
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6880.15639.1prot_L-elsbetiae_contig6880.15639.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6880 4917..5276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.3795166-UTR-L-elsbetiae_contig6880:4815..49161622816761.3795166-UTR-L-elsbetiae_contig6880:4815..4916Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6880 4816..4916 +
1691683793.5957453-UTR-L-elsbetiae_contig6880:4815..49161691683793.5957453-UTR-L-elsbetiae_contig6880:4815..4916Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6880 4816..4916 +
1622816761.4004638-UTR-L-elsbetiae_contig6880:5276..55341622816761.4004638-UTR-L-elsbetiae_contig6880:5276..5534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6880 5277..5534 +
1691683793.61698-UTR-L-elsbetiae_contig6880:5276..55341691683793.61698-UTR-L-elsbetiae_contig6880:5276..5534Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6880 5277..5534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.3900452-CDS-L-elsbetiae_contig6880:4916..52761622816761.3900452-CDS-L-elsbetiae_contig6880:4916..5276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 4917..5276 +
1691683793.607417-CDS-L-elsbetiae_contig6880:4916..52761691683793.607417-CDS-L-elsbetiae_contig6880:4916..5276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6880 4917..5276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6880.15639.1

>prot_L-elsbetiae_contig6880.15639.1 ID=prot_L-elsbetiae_contig6880.15639.1|Name=mRNA_L-elsbetiae_contig6880.15639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MDCRELTDTINRVSLDLDPRAEKTFSDEGYIKCKSQQHQTRPQIASNRQS
SPHKKHHQLTIVESNRIRNANRIDLYPLRAFLLPRCPVLRVQDSFSVGAM
LAAPSALPLDPHYSKSSLP*
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mRNA from alignment at L-elsbetiae_contig6880:4816..5534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6880.15639.1 ID=mRNA_L-elsbetiae_contig6880.15639.1|Name=mRNA_L-elsbetiae_contig6880.15639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig6880:4816..5534+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGTTACCGGGGCTGTGTAGCGTGGACTACTTTTTGAGGCCGCTTTA
TTCAGGATTGATTTAGTCGGCACTTTTGACACTTTTGACAAGGGCGCAGT
GATGGACTGCAGGGAATTAACTGACACAATAAATCGGGTTTCGTTGGACC
TGGACCCACGTGCAGAGAAAACCTTTTCTGACGAAGGGTATATCAAATGC
AAGAGCCAACAGCACCAAACAAGACCACAAATCGCCAGCAACCGCCAGTC
CTCCCCACACAAAAAACACCACCAACTCACAATAGTAGAATCCAACCGCA
TCCGTAACGCAAATCGAATAGATTTGTATCCACTCCGTGCGTTTCTCCTG
CCTCGTTGCCCCGTCCTCCGTGTTCAAGATTCTTTCAGCGTTGGTGCCAT
GCTGGCAGCACCTTCTGCCCTACCTCTTGACCCTCATTATAGTAAAAGTA
GCCTACCGTAGGTGACACACAAAGATACCACACACCCTGGGCCGACGTTT
AGAGCTCCACTACTCCGTCACGAAGAGGGTGCCAGCACCAAACGAAACGT
TTTCGGACAGCTCTCGACGAAGTAGATATTTCCAACGCCACCCCCTCTCA
GCATGACGCTCTTCTTGCTGGGGAAGAGGAATCGAACCGAGCTTTGAAAA
TATGTCCAGAGGGGGCGTGGTATCTTGTGTCACCTACGGTAGTTTATGGC
CTTCCCCCGACCACCTCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6880:4816..5534+

>mRNA_L-elsbetiae_contig6880.15639.1 ID=mRNA_L-elsbetiae_contig6880.15639.1|Name=mRNA_L-elsbetiae_contig6880.15639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig6880:4816..5534+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTGCAGGGAATTAACTGACACAATAAATCGGGTTTCGTTGGACCT
GGACCCACGTGCAGAGAAAACCTTTTCTGACGAAGGGTATATCAAATGCA
AGAGCCAACAGCACCAAACAAGACCACAAATCGCCAGCAACCGCCAGTCC
TCCCCACACAAAAAACACCACCAACTCACAATAGTAGAATCCAACCGCAT
CCGTAACGCAAATCGAATAGATTTGTATCCACTCCGTGCGTTTCTCCTGC
CTCGTTGCCCCGTCCTCCGTGTTCAAGATTCTTTCAGCGTTGGTGCCATG
CTGGCAGCACCTTCTGCCCTACCTCTTGACCCTCATTATAGTAAAAGTAG
CCTACCGTAGATGGACTGCAGGGAATTAACTGACACAATAAATCGGGTTT
CGTTGGACCTGGACCCACGTGCAGAGAAAACCTTTTCTGACGAAGGGTAT
ATCAAATGCAAGAGCCAACAGCACCAAACAAGACCACAAATCGCCAGCAA
CCGCCAGTCCTCCCCACACAAAAAACACCACCAACTCACAATAGTAGAAT
CCAACCGCATCCGTAACGCAAATCGAATAGATTTGTATCCACTCCGTGCG
TTTCTCCTGCCTCGTTGCCCCGTCCTCCGTGTTCAAGATTCTTTCAGCGT
TGGTGCCATGCTGGCAGCACCTTCTGCCCTACCTCTTGACCCTCATTATA
GTAAAAGTAGCCTACCGTAG
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