mRNA_L-elsbetiae_contig688.15638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig688.15638.1
Unique NamemRNA_L-elsbetiae_contig688.15638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig688.15638.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-18
Identity = 42/48 (87.50%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    4 NREDSRGGSIGGEALHGSWAAKRALKEKEASATSAFSGKRTTFGDDDD 147
            +REDSRGG+ GGEALHGSWAAKRALK+KEASAT AFSGKR TFGDDDD
Sbjct:  197 DREDSRGGTAGGEALHGSWAAKRALKDKEASATKAFSGKRITFGDDDD 244
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BLAST of mRNA_L-elsbetiae_contig688.15638.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.440e-17
Identity = 41/48 (85.42%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    4 NREDSRGGSIGGEALHGSWAAKRALKEKEASATSAFSGKRTTFGDDDD 147
            +REDSRGG+ GGEALHGSW AKRALK+KEASAT AFSGKR TFGDDDD
Sbjct:  439 DREDSRGGTAGGEALHGSWVAKRALKDKEASATKAFSGKRITFGDDDD 486
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig688.15638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN2_ECTSI1.300e-1887.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K792_9PHAE3.440e-1785.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig688contigL-elsbetiae_contig688:32825..33080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size257
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.336001-CDS-L-elsbetiae_contig688:32824..329741622816761.336001-CDS-L-elsbetiae_contig688:32824..32974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 32825..32974 +
1691683793.573008-CDS-L-elsbetiae_contig688:32824..329741691683793.573008-CDS-L-elsbetiae_contig688:32824..32974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig688 32825..32974 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.3481793-UTR-L-elsbetiae_contig688:32974..330801622816761.3481793-UTR-L-elsbetiae_contig688:32974..33080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig688 32975..33080 +
1691683793.5830133-UTR-L-elsbetiae_contig688:32974..330801691683793.5830133-UTR-L-elsbetiae_contig688:32974..33080Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig688 32975..33080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig688.15638.1prot_L-elsbetiae_contig688.15638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig688 32825..32974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig688.15638.1

>prot_L-elsbetiae_contig688.15638.1 ID=prot_L-elsbetiae_contig688.15638.1|Name=mRNA_L-elsbetiae_contig688.15638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
SNREDSRGGSIGGEALHGSWAAKRALKEKEASATSAFSGKRTTFGDDDD*
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mRNA from alignment at L-elsbetiae_contig688:32825..33080+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig688.15638.1 ID=mRNA_L-elsbetiae_contig688.15638.1|Name=mRNA_L-elsbetiae_contig688.15638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=256bp|location=Sequence derived from alignment at L-elsbetiae_contig688:32825..33080+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACAGGGAGGATAGCCGCGGGGGATCGATCGGGGGCGAGGCTCTGCA
CGGGTCCTGGGCGGCGAAACGGGCGTTGAAAGAGAAGGAGGCGTCGGCCA
CTTCGGCGTTCAGCGGGAAGAGAACAACCTTCGGGGACGACGACGACTGA
TTTTGATTGCTATTTTAGTAGTGGTGGGTATGCCGAATGGCTTGCCGTCC
TGCTTGCTGTTTCTTTGTGGTGTTACTGCTGAATCAGCGCTTCGCTGTCA
ACGTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig688:32825..33080+

>mRNA_L-elsbetiae_contig688.15638.1 ID=mRNA_L-elsbetiae_contig688.15638.1|Name=mRNA_L-elsbetiae_contig688.15638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig688:32825..33080+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAACAGGGAGGATAGCCGCGGGGGATCGATCGGGGGCGAGGCTCTGCA
CGGGTCCTGGGCGGCGAAACGGGCGTTGAAAGAGAAGGAGGCGTCGGCCA
CTTCGGCGTTCAGCGGGAAGAGAACAACCTTCGGGGACGACGACGACTGA
AGCAACAGGGAGGATAGCCGCGGGGGATCGATCGGGGGCGAGGCTCTGCA
CGGGTCCTGGGCGGCGAAACGGGCGTTGAAAGAGAAGGAGGCGTCGGCCA
CTTCGGCGTTCAGCGGGAAGAGAACAACCTTCGGGGACGACGACGACTGA
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