mRNA_L-elsbetiae_contig688.15633.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Match: D7FSH8_ECTSI (RHD3b, RHD3/Sey1 family GTPase involved in the ER-to-Golgi traffic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH8_ECTSI) HSP 1 Score: 689 bits (1778), Expect = 1.420e-245 Identity = 349/423 (82.51%), Postives = 383/423 (90.54%), Query Frame = 1 Query: 1 KPALEELLTLYEDGVVDPEQQKTFVVAVRDCEEGDEAELEKLVGERLQAIWAAAVKPEGFEGAALSDVLDVKVFTLPHHSFASDEYLLGAGLLKSSVMDGAADTPAEEVARLLQQVSSYAGPATEFVGGNALTASFVASSAAVKCMASFKSLVGRMGAGFTELNTDFGELCDGVVDTVMEEYDVAVEGVSGASGVLSRKKAELKRFCLRELGESHAAQIGLVRTASRGKFDEILSGLRVSPDVGKQMMDAIQEADKFFAKTAKGMNSRHGSWPSNSVRKDLRDEMREFASERLQLVQAQGGLVNMKKRKPVGMAFHWFLKKPFGSEARRSRLSPDDPLRWSHKPNRSSPMFVDLLAPNGLEVEFPEELTEETEIHRDVKQLQKVAGILVKRHDERFDTPPDVYIDGTMEGDPEKIKKEFYRGE 1269 +PALEELLTLYEDGVVDPEQ KTFVVAVRDCE+GDEAELEK VGERLQAIWAAAVKPEGF G+ALSDVLDVKVFTLPHHSFASDEYLLGAGLLK+SVMDGAA TPA EVARLLQQVSSYAGPATE VG NALTASF++SSAAVKCMASFKSLVGRMGAGF ELNTDFGELCDGV+DTV++EYD AV+GVSGASGVLSRKKAELKR CLRELG HA Q+ L+RTA+R KFDE LSGLRVSPDVGKQMMDAIQEADKFFAKT +GMNSRHGSWPSNSVRK+LRDEMREFASERLQLVQAQGG+V M+KRKPVGMAFHWFL KPFG +AR SRL DP+R+++K N++SPMF++LL P+ EV P E EETEIH+DVKQLQKV+ ILV+RHDER PDV++DGT GDPEKIK+EFYRG+ Sbjct: 142 QPALEELLTLYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMDGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFKSLVGRMGAGFEELNTDFGELCDGVIDTVLQEYDEAVDGVSGASGVLSRKKAELKRHCLRELGLRHADQVDLLRTAARAKFDETLSGLRVSPDVGKQMMDAIQEADKFFAKTVRGMNSRHGSWPSNSVRKELRDEMREFASERLQLVQAQGGMVRMQKRKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPSAQEVSLPSEGIEETEIHKDVKQLQKVSQILVRRHDERLTKAPDVFVDGTTRGDPEKIKREFYRGD 564
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Match: A0A6H5JTE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE5_9PHAE) HSP 1 Score: 250 bits (638), Expect = 7.490e-79 Identity = 120/159 (75.47%), Postives = 138/159 (86.79%), Query Frame = 1 Query: 793 MNSRHGSWPSNSVRKDLRDEMREFASERLQLVQAQGGLVNMKKRKPVGMAFHWFLKKPFGSEARRSRLSPDDPLRWSHKPNRSSPMFVDLLAPNGLEVEFPEELTEETEIHRDVKQLQKVAGILVKRHDERFDTPPDVYIDGTMEGDPEKIKKEFYRGE 1269 MNSRHGSWPSNSVRK+LRDEMREFASERLQLVQAQGG+V M+KRKPVGMAFHWFL KPFG +AR SRL DP+R+++K N++SPMF++LL P EVEFP E TEETEIH+DVKQLQKV+ ILV+RHDER PDV+IDGT GDPEKIK+EFYRG+ Sbjct: 1 MNSRHGSWPSNSVRKELRDEMREFASERLQLVQAQGGMVRMQKRKPVGMAFHWFLPKPFGQQARESRLDLTDPMRYTYKANQASPMFMELLCPPAQEVEFPSEGTEETEIHKDVKQLQKVSQILVRRHDERLTKAPDVFIDGTTRGDPEKIKREFYRGD 159
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Match: A0A6H5JWB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB1_9PHAE) HSP 1 Score: 255 bits (652), Expect = 5.900e-73 Identity = 135/150 (90.00%), Postives = 142/150 (94.67%), Query Frame = 1 Query: 1 KPALEELLTLYEDGVVDPEQQKTFVVAVRDCEEGDEAELEKLVGERLQAIWAAAVKPEGFEGAALSDVLDVKVFTLPHHSFASDEYLLGAGLLKSSVMDGAADTPAEEVARLLQQVSSYAGPATEFVGGNALTASFVASSAAVKCMASFK 450 +PALEELL LYEDGVVDPEQ KTFVVAVRDCE+GDEAELEK VGERLQAIWAAAVKPEGF G+ALSDVLDVKVFTLPHHSFASDEYLLGAGLLK+SVM+GAA TPA EVARLLQQVSSYAGPATE VG NALTASF++SSAAVKCMASFK Sbjct: 142 QPALEELLALYEDGVVDPEQPKTFVVAVRDCEDGDEAELEKRVGERLQAIWAAAVKPEGFAGSALSDVLDVKVFTLPHHSFASDEYLLGAGLLKNSVMNGAAGTPAVEVARLLQQVSSYAGPATESVGSNALTASFISSSAAVKCMASFK 291
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Match: A0A835ZAQ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAQ3_9STRA) HSP 1 Score: 184 bits (467), Expect = 3.870e-49 Identity = 119/340 (35.00%), Postives = 188/340 (55.29%), Query Frame = 1 Query: 64 KTFVVAVRDC--EEGDEAELEKLVGERLQAIWAAAVKPEGFEGAALSDVLDVKVFTLPHHSFASDEYLLGAGLLKSSVMDGAADTPAEEVARLLQQVSSYA-GPATEFVGGNALTASFVASSAAVKCMASFKSLVGRMGAGFTE-LNTDFGELCDGVVDTVMEEYDVAVEGVSGASG---VLSRKKAELKRFCLRELGESHAAQIGLVRTASRGKFDEILSGLRVSPDVGKQMMDAIQEADKFFAKTAKGMNSRHGSWPSNSVRKDLRDEMREFASERLQLVQAQGGLVNMKKRKPVGMAFHWFLKKPFGSEARRSRLSPDDPLRWSHKPNRSSPMFVDL 1062 K V AVRD EE + ++E + E LQ +W AV+P F +L DVLDV LP HS A+ EY A L++ + +GA A +V + LQ + A G E L A+ VA +AA + +A+FK+ V + A + L+ +FG D +VD +++Y V V+ +K+ EL+ LRE +AAQ L+R A+ KF + LR+SP +GK M A++E+D + A++AKG+ S++ ++ R++L ++R A+ERLQL + QG + K R+PVG+A HW L +PFG++A RS L D +S + ++ ++ + Sbjct: 148 KPLVFAVRDFDGEEASQEQVEAAMTEALQRMWQRAVRPGDFAKKSLEDVLDVSFSFLPSHSLAAGEYAHAAAALRTRLAEGAKSATAADVLKTLQAAPAQATGAPVESTSPAELAAALVAKTAAAQALATFKNRVSALSASLADGLDPEFGAHVDIIVDEALDQYSQGVAAXXXXXXXXXVIGKKRGELRAAMLREAHGLYAAQFRLLRAAAADKFRRSPATLRISPTLGKDMDAAMKESDSYMAESAKGLKSKYLPALLDAERRELGSDLRAVAAERLQLAKLQG-MSAAKSRRPVGIALHWLLPEPFGTDASRSVLGAGDEPAFSSERLKADSLWFEF 486
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Match: R7Q4K7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4K7_CHOCR) HSP 1 Score: 80.1 bits (196), Expect = 1.810e-12 Identity = 91/382 (23.82%), Postives = 165/382 (43.19%), Query Frame = 1 Query: 1 KPALEELLTLYEDGVV-DPEQQK-TFVVAVRDCEEGDEAELEKLVG--ERLQAIWAAAVKPEGFEGAALSDVLDVKVFTLPHHSFASDEYLLGAGLLKSSVMDGAADTPAEEVARLLQQVSS-------------YAGPATEFVGGNALTASFVASSAAVKCMASFKSLVGRMGAGFTELNTD-------FGELCDGVVDTVMEEYDVAVEGVSGASGVLSRKKAELKRFCLRELGESHAAQIGLVRTASRGKFDEILSGLRVSPD-VGKQMMDAIQEADKFFAKTAKGMNSRHGSWPSNSVRKDLRDEMREFASERLQLVQAQGGLVNM---------------KKRKPVGMAFHWFLKKPFG-SEARRSRLSPDDPLRWS 1023 + +L E+L + +DG++ P + K +F+V V+D E E + G + + ++A+ VKP ++++ + + LP F ++E+ G ++S +D AAD E + + V+ + AT+ L ++F + K + + GA TD FG +V+ + YD G S RK+ ELK +L QIG +R + F + L G+ + K + ++E+ K+F A+ + ++ SW ++ K+L +MRE A+ERLQ + N K R+P+ ++FH+ PFG +++ +LS DD L +S Sbjct: 135 RSSLTEMLMMQDDGIIKQPNKDKRSFIVVVKDYESEVLTRQEIITGFLQSIHELYASLVKPSRCP-QRVTELFEFEFRLLPSDKFQAEEFENGLADMRSDFLDPAADNYLFEQSAFTRDVNVSLEDCAKGAWEKLFKEQATDMPNSVELMSTFDCGNVMRKVFEKY-----QRGARLWRRETDGGVIVENFGSAASKMVEGTVGVYDQDAASHKG-SKAFKRKRDELKGLLDADLYGLFVTQIGKLREITYRLFKDKLDGIGDDEARLEKAVNSTLKESQKYFQVNAELLRPKNTSWRFDNDTKELSQQMREDATERLQRARLADYQQNNGRRGRRRRPGLGPGEKSRQPIQVSFHYLDPAPFGWKDSKFEKLSVDDNLEYS 509 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig688.15633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig688.15633.1 >prot_L-elsbetiae_contig688.15633.1 ID=prot_L-elsbetiae_contig688.15633.1|Name=mRNA_L-elsbetiae_contig688.15633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=430bp KPALEELLTLYEDGVVDPEQQKTFVVAVRDCEEGDEAELEKLVGERLQAIback to top mRNA from alignment at L-elsbetiae_contig688:118..8233+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig688.15633.1 ID=mRNA_L-elsbetiae_contig688.15633.1|Name=mRNA_L-elsbetiae_contig688.15633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8116bp|location=Sequence derived from alignment at L-elsbetiae_contig688:118..8233+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig688:118..8233+ >mRNA_L-elsbetiae_contig688.15633.1 ID=mRNA_L-elsbetiae_contig688.15633.1|Name=mRNA_L-elsbetiae_contig688.15633.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2580bp|location=Sequence derived from alignment at L-elsbetiae_contig688:118..8233+ (Laminarionema elsbetiae ELsaHSoW15)back to top |