mRNA_L-elsbetiae_contig6866.15625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6866.15625.1
Unique NamemRNA_L-elsbetiae_contig6866.15625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6866.15625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6866contigL-elsbetiae_contig6866:7418..7756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size341
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.8406012-CDS-L-elsbetiae_contig6866:7417..77321622816759.8406012-CDS-L-elsbetiae_contig6866:7417..7732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6866 7418..7732 +
1691683792.379309-CDS-L-elsbetiae_contig6866:7417..77321691683792.379309-CDS-L-elsbetiae_contig6866:7417..7732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6866 7418..7732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.851748-UTR-L-elsbetiae_contig6866:7732..77561622816759.851748-UTR-L-elsbetiae_contig6866:7732..7756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6866 7733..7756 +
1691683792.389459-UTR-L-elsbetiae_contig6866:7732..77561691683792.389459-UTR-L-elsbetiae_contig6866:7732..7756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6866 7733..7756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6866.15625.1prot_L-elsbetiae_contig6866.15625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6866 7418..7732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6866.15625.1

>prot_L-elsbetiae_contig6866.15625.1 ID=prot_L-elsbetiae_contig6866.15625.1|Name=mRNA_L-elsbetiae_contig6866.15625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RGFRGEALLWCCCGCVCVCVCVETTETERPRAGSVLSQLSTYVCTQRPCL
SCFSVVFLGGTRLSLTANAFCFFIVVFARLHMYTFSLFLCVPPSPTPPCL
DVFM*
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mRNA from alignment at L-elsbetiae_contig6866:7418..7756+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6866.15625.1 ID=mRNA_L-elsbetiae_contig6866.15625.1|Name=mRNA_L-elsbetiae_contig6866.15625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=339bp|location=Sequence derived from alignment at L-elsbetiae_contig6866:7418..7756+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGGTTTCGCGGGGAAGCTTTGCTTTGGTGCTGTTGCGGGTGTGTGTG
TGTGTGTGTGTGTGTGGAGACGACAGAGACTGAGCGGCCGCGAGCCGGGA
GCGTGCTGTCCCAGCTTTCAACGTATGTATGTACCCAACGTCCTTGTCTG
TCTTGCTTTTCTGTGGTGTTCTTGGGTGGGACGAGGTTATCTCTCACTGC
AAATGCATTCTGTTTTTTTATTGTTGTTTTCGCCCGCCTACATATGTACA
CATTTTCGTTATTCCTTTGTGTCCCTCCTTCGCCGACGCCTCCTTGCCTG
GACGTATTTATGTAGCTAGCTAGCTACATAAGGCTTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6866:7418..7756+

>mRNA_L-elsbetiae_contig6866.15625.1 ID=mRNA_L-elsbetiae_contig6866.15625.1|Name=mRNA_L-elsbetiae_contig6866.15625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6866:7418..7756+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGGGTTTCGCGGGGAAGCTTTGCTTTGGTGCTGTTGCGGGTGTGTGTG
TGTGTGTGTGTGTGTGGAGACGACAGAGACTGAGCGGCCGCGAGCCGGGA
GCGTGCTGTCCCAGCTTTCAACGTATGTATGTACCCAACGTCCTTGTCTG
TCTTGCTTTTCTGTGGTGTTCTTGGGTGGGACGAGGTTATCTCTCACTGC
AAATGCATTCTGTTTTTTTATTGTTGTTTTCGCCCGCCTACATATGTACA
CATTTTCGTTATTCCTTTGTGTCCCTCCTTCGCCGACGCCTCCTTGCCTG
GACGTATTTATGTAGCGAGGGTTTCGCGGGGAAGCTTTGCTTTGGTGCTG
TTGCGGGTGTGTGTGTGTGTGTGTGTGTGTGGAGACGACAGAGACTGAGC
GGCCGCGAGCCGGGAGCGTGCTGTCCCAGCTTTCAACGTATGTATGTACC
CAACGTCCTTGTCTGTCTTGCTTTTCTGTGGTGTTCTTGGGTGGGACGAG
GTTATCTCTCACTGCAAATGCATTCTGTTTTTTTATTGTTGTTTTCGCCC
GCCTACATATGTACACATTTTCGTTATTCCTTTGTGTCCCTCCTTCGCCG
ACGCCTCCTTGCCTGGACGTATTTATGTAG
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