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Homology
BLAST of mRNA_L-elsbetiae_contig6864.15623.1 vs. uniprot
Match: A0A6H5JA21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA21_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.210e-38 Identity = 153/359 (42.62%), Postives = 176/359 (49.03%), Query Frame = 1
Query: 46 ADPSARVANPPPRSTPLHSACRSTRLEAVEVLLRGGADETLGDLTPXXSSPLAAAQXXXXXXXXXXXXXXXXRPSTTPLGVVGIGNLGSGQDPTQRGPTETAAEFARRRDPQTMEAIRQALRNAPADRTWRRRSWLVMLRASAEAEASARATREKWELSSMTGSLVRMIGSGLVLGDNRGSGGGKQG----QREGDGHGXXXGM-------------KQEAAGGTAVGRXXXXXXXXXXRVVNGKGKGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAHD-----------GECG-------------DGGEDESVAELRFLCGRLFDLAAVEEGAFRRVLSYL 999
ADPSAR+A PPPRST XXS A + PSTTP+GVVG+G+ G +DPT R P E+AAE ARRRDPQTMEAIR ALRNAPADR WRRRSWLVMLRASAEAEA+A+ATR+KWELSSM GS+V +I + LVLG+ G K +R G GXXX + A XXXXXXXXXX +G A X XXXXXX A H+ GE G DGG+ + LR+LCGRLFDLAAVEEGAFR V+ +L
Sbjct: 381 ADPSARIAYPPPRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLPAPSNAPPP-------------PSTTPIGVVGLGHCGRDEDPTLRLPAESAAEHARRRDPQTMEAIRMALRNAPADRAWRRRSWLVMLRASAEAEAAAKATRKKWELSSMAGSVVDLIDNRLVLGETSREKGAKDAVDKKERVTGGAGXXXXXXXXXXXXXXXXXAEDATAXXXXXXXXXXXXXXXXXXXXDGDEAAAXXKREXXXXXXGVAAEEACAREGPAKETPPAAHREGAHLDADGGHNSSREEETAVVVGEQGEGRGQAREGAAGDDGGDGKGARVLRWLCGRLFDLAAVEEGAFRNVVLFL 726
BLAST of mRNA_L-elsbetiae_contig6864.15623.1 vs. uniprot
Match: D7FPM3_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM3_ECTSI) HSP 1 Score: 154 bits (388), Expect = 3.250e-38 Identity = 125/287 (43.55%), Postives = 149/287 (51.92%), Query Frame = 1
Query: 265 PSTTPLGVVGIGNLGSGQDPTQRGPTETAAEFARRRDPQTMEAIRQALRNAPADRTWRRRSWLVMLRASAEAEASARATREKWELSSMTGSLVRMIGSGLVLGDNRGSGGGKQGQREGDGHGXXXGMKQEAAGGTAVGRXXXXXXXXXX-------------------------------RVVNGKGKGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAHD-----GECGDG------GEDESVAELRFLCGRLFDLAAVEEGAFRRVLSYL 999
PSTTP+GVVG+GN G +DPT R TE+AAE ARRRDPQTMEAIR ALRNAPADR WRRRSWLVMLR SAEAEA+A+ATR+KWELSSM GS+V +IG+ LVLG+ G +QG ++ ++ GG XXXXXXXXXX R + G A A + GE G+G G+ + LR+LCGRLFDLAAVEEGAFR V+ +L
Sbjct: 408 PSTTPVGVVGLGNCGRDEDPTLRLTTESAAEHARRRDPQTMEAIRMALRNAPADRAWRRRSWLVMLRVSAEAEAAAKATRKKWELSSMAGSVVDLIGNRLVLGEA----GREQGAKD------AVDKEERVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDKAAXXXXREGDEAPSGVAAEEACAREGSAKEAPPAAHREGAHLDADGGNNGSHGGVTAVVAREQGEAQGEAGEGAGGDDVGDGDGARVLRWLCGRLFDLAAVEEGAFRNVVLFL 684
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 156.8 |
| Seed ortholog evalue | 1.8e-35 |
| Seed eggNOG ortholog | 2880.D7FPM3 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-16_001430.1 |
| Exons | 3 |
| Model size | 1002 |
| Cds size | 1002 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816759.5939155-CDS-L-elsbetiae_contig6864:8352..8944 | 1622816759.5939155-CDS-L-elsbetiae_contig6864:8352..8944 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 8353..8944 - |
| 1691683792.1717765-CDS-L-elsbetiae_contig6864:8352..8944 | 1691683792.1717765-CDS-L-elsbetiae_contig6864:8352..8944 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 8353..8944 - |
| 1622816759.6054442-CDS-L-elsbetiae_contig6864:9670..9849 | 1622816759.6054442-CDS-L-elsbetiae_contig6864:9670..9849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 9671..9849 - |
| 1691683792.1851594-CDS-L-elsbetiae_contig6864:9670..9849 | 1691683792.1851594-CDS-L-elsbetiae_contig6864:9670..9849 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 9671..9849 - |
| 1622816759.6172178-CDS-L-elsbetiae_contig6864:9954..10185 | 1622816759.6172178-CDS-L-elsbetiae_contig6864:9954..10185 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 9955..10185 - |
| 1691683792.1958647-CDS-L-elsbetiae_contig6864:9954..10185 | 1691683792.1958647-CDS-L-elsbetiae_contig6864:9954..10185 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6864 9955..10185 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6864.15623.1 >prot_L-elsbetiae_contig6864.15623.1 ID=prot_L-elsbetiae_contig6864.15623.1|Name=mRNA_L-elsbetiae_contig6864.15623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=334bp
GKGSAGLIEDLLRAGADPSARVANPPPRSTPLHSACRSTRLEAVEVLLRG
GADETLGDLTPPPSSPLAAAQAAAAAAAAAAAAAAPPRPSTTPLGVVGIG
NLGSGQDPTQRGPTETAAEFARRRDPQTMEAIRQALRNAPADRTWRRRSW
LVMLRASAEAEASARATREKWELSSMTGSLVRMIGSGLVLGDNRGSGGGK
QGQREGDGHGGGAGMKQEAAGGTAVGRGGGGGGGDGGRVVNGKGKGAEED
DAKRVRRGGAGGAGGETEEDDSVTTGTASATEEAASSACAAHDGECGDGG
EDESVAELRFLCGRLFDLAAVEEGAFRRVLSYL* back to topmRNA from alignment at L-elsbetiae_contig6864:8353..10185- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6864.15623.1 ID=mRNA_L-elsbetiae_contig6864.15623.1|Name=mRNA_L-elsbetiae_contig6864.15623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1833bp|location=Sequence derived from alignment at L-elsbetiae_contig6864:8353..10185- (Laminarionema elsbetiae ELsaHSoW15)
GGAAAAGGCAGCGCGGGCCTGATCGAGGACTTGCTCCGCGCCGGGGCCGA
CCCGTCCGCGCGCGTGGCCAACCCCCCGCCCAGGTCCACCCCGTTGCATA
GCGCCTGCCGCTCGACCCGCCTGGAGGCGGTGGAGGTCCTCCTTCGCGGC
GGCGCGGACGAGACCCTGGGAGACCTGACGCCGCCGCCGAGCTCGCCGCT
CGCGGCGGCTCAGGCGGCGGCCGCGGCGGCGGTCGCGGCGGGGCACGCGG
CGCCGCCGGGGGCGCTGGCGGCGGCCCTTGCGGTGCTGGCGACGGCAGGC
ATCGCCGGCGGCGGCGGTGGGGGTGGAGCTAACGAGGCGGCGGCGGCGGC
GGCGGCGGCGCCCCCGAGGCCTTCCACCACACCGCTGGGTGTGGTGGGCA
TCGGCAACCTTGGTTCCGGCCAGGATCCGACGCAGAGAGGGCCGACAGAG
ACGGCCGCGGAATTCGCCCGGCGGCGTGACCCTCAGACGATGGAGGCGAT
TCGGCAGGCGCTCAGGTGGGTGGGTGGGTGGGTGTGGGGCGACTTAATCG
AAAGGCGGGGCTCCACGCATTGCTGCACGCGCACAGATTGACGGGAGAAT
GTATGGTATGCATTATTTCCTGCCCGAGAGGGAAAAAGGAATAGACAGCA
TTACCCTGTGTACATAGATTTTGAGTGAAAAACACCTCGCCTGGCGACAA
GTTTTTGTTGCTGTTTTCCGTGAGTTGCGGGGCTTGCACTCCCCCCCCCC
CACCTCTTGGCCCGATGTTCAGAGCCCCGGGGCATCGAAACAACTTAAGA
TGGTAGGTGTTCTCGCGAGCAACGCGGTTTGTTCTGAGAGTCTGGACGAC
ACGTTTTGCAACGCTTCCCGCCTGTCCCGGTACGACCCTCTGCTTCCAAC
GGAGACAGACATCGAGGTTGGTCATGTCTGTATGTTTTGTGTTTTGGGTC
GAGGCCCGGGGAGGGCTGTCACCGCTGGCTGTCGGTGTATGTATCGAAGC
AACGACCCACCAGCAGTCCGCGGCAGTCGAGCTGAGCGCTCGTCCCATCT
CCGTATGTACGTATACCTCGCTCAGCTCGACAGTCCTCTCATCTGCTGCA
TACAAACAGGCATACCTATATACAGCGTAATTTTAACAATACGAAGTACT
ACATAGAAGTTATATATACATACATCAATACATACAAACATACGGTGATC
ACGACCGCCCCACCACTTCTGCCACGACGCACCTCCCGCAGGAATGCACC
GGCGGATCGGACGTGGCGGCGAAGATCGTGGCTGGTAATGCTGAGGGCAT
CGGCGGAGGCGGAGGCGTCGGCGAGGGCAACCCGGGAGAAGTGGGAGCTG
TCGTCGATGACCGGGAGCTTGGTCAGGATGATTGGTAGCGGGCTCGTGTT
GGGGGACAACAGGGGGTCCGGTGGCGGCAAGCAGGGGCAGCGAGAGGGGG
ATGGACACGGTGGTGGTGCCGGAATGAAGCAGGAGGCTGCCGGGGGCACG
GCGGTTGGCCGTGGCGGTGGTGGTGGTGGTGGTGACGGGGGCCGCGTGGT
GAACGGCAAGGGTAAGGGTGCGGAGGAGGATGACGCGAAGCGGGTGAGGC
GGGGCGGCGCCGGCGGAGCCGGCGGCGAAACAGAGGAGGATGATTCGGTG
ACTACCGGCACAGCTTCCGCGACAGAGGAGGCTGCTTCGTCGGCGTGCGC
TGCTCACGACGGCGAGTGCGGCGATGGCGGCGAAGACGAGAGTGTGGCAG
AGCTGCGATTCCTGTGCGGGAGGCTGTTTGATCTCGCCGCGGTTGAGGAG
GGGGCGTTCCGGCGGGTGCTTTCGTATCTCTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6864:8353..10185- >mRNA_L-elsbetiae_contig6864.15623.1 ID=mRNA_L-elsbetiae_contig6864.15623.1|Name=mRNA_L-elsbetiae_contig6864.15623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2004bp|location=Sequence derived from alignment at L-elsbetiae_contig6864:8353..10185- (Laminarionema elsbetiae ELsaHSoW15)
GGAAAAGGCAGCGCGGGCCTGATCGAGGACTTGCTCCGCGCCGGGGCCGA
CCCGTCCGCGCGCGTGGCCAACCCCCCGCCCAGGTCCACCCCGTTGCATA
GCGCCTGCCGCTCGACCCGCCTGGAGGCGGTGGAGGTCCTCCTTCGCGGC
GGCGCGGACGAGACCCTGGGAGACCTGACGCCGCCGCCGAGCTCGCCGCT
CGCGGCGGCTCAGGCGGCGGCCGCGGCGGCGGGAAAAGGCAGCGCGGGCC
TGATCGAGGACTTGCTCCGCGCCGGGGCCGACCCGTCCGCGCGCGTGGCC
AACCCCCCGCCCAGGTCCACCCCGTTGCATAGCGCCTGCCGCTCGACCCG
CCTGGAGGCGGTGGAGGTCCTCCTTCGCGGCGGCGCGGACGAGACCCTGG
GAGACCTGACGCCGCCGCCGAGCTCGCCGCTCGCGGCGGCTCAGGCGGCG
GCCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCCCCCGAGGCCTTC
CACCACACCGCTGGGTGTGGTGGGCATCGGCAACCTTGGTTCCGGCCAGG
ATCCGACGCAGAGAGGGCCGACAGAGACGGCCGCGGAATTCGCCCGGCGG
CGTGACCCTCAGACGATGGAGGCGATTCGGCAGGCGCTCAGGCGGCGGCG
GCGGCGGCGGCGGCGCCCCCGAGGCCTTCCACCACACCGCTGGGTGTGGT
GGGCATCGGCAACCTTGGTTCCGGCCAGGATCCGACGCAGAGAGGGCCGA
CAGAGACGGCCGCGGAATTCGCCCGGCGGCGTGACCCTCAGACGATGGAG
GCGATTCGGCAGGCGCTCAGGAATGCACCGGCGGATCGGACGTGGCGGCG
AAGATCGTGGCTGGTAATGCTGAGGGCATCGGCGGAGGCGGAGGCGTCGG
CGAGGGCAACCCGGGAGAAGTGGGAGCTGTCGTCGATGACCGGGAGCTTG
GTCAGGATGATTGGTAGCGGGCTCGTGTTGGGGGACAACAGGGGGTCCGG
TGGCGGCAAGCAGGGGCAGCGAGAGGGGGATGGACACGGTGGTGGTGCCG
GAATGAAGCAGGAGGCTGCCGGGGGCACGGCGGTTGGCCGTGGCGGTGGT
GGTGGTGGTGGTGACGGGGGCCGCGTGGTGAACGGCAAGGGTAAGGGTGC
GGAGGAGGATGACGCGAAGCGGGTGAGGCGGGGCGGCGCCGGCGGAGCCG
GCGGCGAAACAGAGGAGGATGATTCGGTGACTACCGGCACAGCTTCCGCG
ACAGAGGAGGCTGCTTCGTCGGCGTGCGCTGCTCACGACGGCGAGTGCGG
CGATGGCGGCGAAGACGAGAGTGTGGCAGAGCTGCGATTCCTGTGCGGGA
GGCTGTTTGATCTCGCCGCGGTTGAGGAGGGGGCGTTCCGGCGGGTGCTT
TCGTATCTCTAGGAATGCACCGGCGGATCGGACGTGGCGGCGAAGATCGT
GGCTGGTAATGCTGAGGGCATCGGCGGAGGCGGAGGCGTCGGCGAGGGCA
ACCCGGGAGAAGTGGGAGCTGTCGTCGATGACCGGGAGCTTGGTCAGGAT
GATTGGTAGCGGGCTCGTGTTGGGGGACAACAGGGGGTCCGGTGGCGGCA
AGCAGGGGCAGCGAGAGGGGGATGGACACGGTGGTGGTGCCGGAATGAAG
CAGGAGGCTGCCGGGGGCACGGCGGTTGGCCGTGGCGGTGGTGGTGGTGG
TGGTGACGGGGGCCGCGTGGTGAACGGCAAGGGTAAGGGTGCGGAGGAGG
ATGACGCGAAGCGGGTGAGGCGGGGCGGCGCCGGCGGAGCCGGCGGCGAA
ACAGAGGAGGATGATTCGGTGACTACCGGCACAGCTTCCGCGACAGAGGA
GGCTGCTTCGTCGGCGTGCGCTGCTCACGACGGCGAGTGCGGCGATGGCG
GCGAAGACGAGAGTGTGGCAGAGCTGCGATTCCTGTGCGGGAGGCTGTTT
GATCTCGCCGCGGTTGAGGAGGGGGCGTTCCGGCGGGTGCTTTCGTATCT
CTAG back to top
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