mRNA_L-elsbetiae_contig686.15617.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig686.15617.1
Unique NamemRNA_L-elsbetiae_contig686.15617.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: A0A7S1XU54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU54_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.120e-20
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 ELHGERENTGKLRATLQTRKTKEDQLRKKMQETQRSSSAREMMFALEKAKRERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVV 288
            E+  ERENT ++RA  Q + TK +QL+KK +E +  S AR  +F LEKAK   LE+T+ HF++H  QRE TL+EKEK I+ LRS N TLDNFRYV+
Sbjct:  466 EVKLERENTARMRARYQAQNTKLEQLKKKFEEMKSESEARNKLFLLEKAKARNLESTLQHFQRHTAQREETLSEKEKLIVGLRSENRTLDNFRYVL 561
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: A0A5D6Y514_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y514_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.250e-11
Identity = 40/92 (43.48%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   13 ERENTGKLRATLQTRKTKEDQLRKKMQETQRSSSAREMMFALEKAKRERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVV 288
            ER+NT   +  +    TK + L+KK+QE + SS AR+++FA E+AK  +LEAT+ H+E+H     ++LA+K+K I  L+S+N  L+NFR V+
Sbjct:  942 ERQNTAIKQGQVSASNTKLESLKKKIQELKASSHARDVLFATERAKTAKLEATLSHYEKHFETCTVSLADKDKAIQGLKSSNRVLENFRSVL 1033
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: D0N3D0_PHYIT (WD domain-containing protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N3D0_PHYIT)

HSP 1 Score: 63.2 bits (152), Expect = 1.770e-9
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 ELHGERENTGKLRATLQTRKTKEDQLRKKMQETQRSSSAREMMFALEKAKRERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVV 288
            +L  ER+NT   +  +    T+ + LR+KMQE + +S AR+++ + E+AK  RLEAT+ ++E+H      +  EKEKTI  L+S+N  L+NFR V+
Sbjct:  925 QLENERQNTAVKQGQVSAANTRLESLRRKMQELEAASHARDVLLSTERAKLARLEATLANYERHFEVCRGSSHEKEKTITGLKSDNRVLENFRSVL 1020
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: A0A7S2FZ12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZ12_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.540e-7
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:  154 ERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVV 288
            E+L AT+ HF++HM +RE TL +KEK ILELR  N TLDNFR+V+
Sbjct:    1 EKLSATLDHFKRHMEERESTLEDKEKGILELRRKNITLDNFRFVL 45
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: A0A8K1CI25_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI25_PYTOL)

HSP 1 Score: 57.0 bits (136), Expect = 2.580e-7
Identity = 34/92 (36.96%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   13 ERENTGKLRATLQTRKTKEDQLRKKMQETQRSSSAREMMFALEKAKRERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVV 288
            ER+NT   +  L    TK +  +KK+QE + +  A+ ++ + E+AK  +LEATM  +E+H    + ++++K+K I+EL+S+N  L+NFR V+
Sbjct:  905 ERQNTAIKQGQLSATNTKLESTKKKVQELKATLHAQNILLSTERAKLTKLEATMTQYEKHFDVCKFSISDKDKEIVELKSSNRVLENFRSVL 996
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BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Match: A0A835Z3R4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.690e-5
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  100 QRSSSAREMMFALEKAKRERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRY 282
            QRS +AR+M++ALE+ KRE+LEATMHH                    ELRSNN TLDNF +
Sbjct:  131 QRSGAARDMLYALERGKREKLEATMHHXXXXXXXXXXXXXXXXXXXXELRSNNLTLDNFSW 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig686.15617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S1XU54_9STRA9.120e-2055.21Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6Y514_9STRA2.250e-1143.48Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D0N3D0_PHYIT1.770e-940.63WD domain-containing protein, putative n=2 Tax=Phy... [more]
A0A7S2FZ12_9STRA1.540e-762.22Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8K1CI25_PYTOL2.580e-736.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835Z3R4_9STRA3.690e-549.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig686contigL-elsbetiae_contig686:30988..32511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.5e-14
Seed eggNOG ortholog44056.XP_009043086.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD40 repeats
EggNOG OGs29BYW@1,2RJ2B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size296
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig686.15617.1prot_L-elsbetiae_contig686.15617.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig686 30988..32511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.235897-CDS-L-elsbetiae_contig686:30987..310381622816759.235897-CDS-L-elsbetiae_contig686:30987..31038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 30988..31038 +
1691683791.9350839-CDS-L-elsbetiae_contig686:30987..310381691683791.9350839-CDS-L-elsbetiae_contig686:30987..31038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 30988..31038 +
1622816759.250061-CDS-L-elsbetiae_contig686:31445..316191622816759.250061-CDS-L-elsbetiae_contig686:31445..31619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 31446..31619 +
1691683791.955068-CDS-L-elsbetiae_contig686:31445..316191691683791.955068-CDS-L-elsbetiae_contig686:31445..31619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 31446..31619 +
1622816759.265785-CDS-L-elsbetiae_contig686:32442..325111622816759.265785-CDS-L-elsbetiae_contig686:32442..32511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 32443..32511 +
1691683791.966732-CDS-L-elsbetiae_contig686:32442..325111691683791.966732-CDS-L-elsbetiae_contig686:32442..32511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig686 32443..32511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig686.15617.1

>prot_L-elsbetiae_contig686.15617.1 ID=prot_L-elsbetiae_contig686.15617.1|Name=mRNA_L-elsbetiae_contig686.15617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
ELHGERENTGKLRATLQTRKTKEDQLRKKMQETQRSSSAREMMFALEKAK
RERLEATMHHFEQHMHQRELTLAEKEKTILELRSNNTTLDNFRYVVQ*
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mRNA from alignment at L-elsbetiae_contig686:30988..32511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig686.15617.1 ID=mRNA_L-elsbetiae_contig686.15617.1|Name=mRNA_L-elsbetiae_contig686.15617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1524bp|location=Sequence derived from alignment at L-elsbetiae_contig686:30988..32511+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCTACACGGGGAGAGAGAGAACACCGGAAAACTCCGTGCCACCCTCCA
GGTGATATCAAAACTCAAAGCTACATACCGTAGGTGACACAAGATATCAC
CCCCCCCCCTAGACCGAGTTTTAGAGCTCCATTGCTCCGTAACGAAGAGG
GTGCCAGCACCAAACGACACATTTTTGGACAGCCCTCGACTACATATCAT
AGATCTTTCCAACGCCACCCCCTTTCGGCACTGTCACTCTTCTTGCTGGG
GAGGAATCGAGTTTTGAAAATCTATCTGGGGGGGGGATCACCTACGCTAG
TCTATTACTCCTATGTACTCCTATGTAATATTACGCACTTTTGCCGATGA
AAGTCACTCGGGCGAAAGAGGGCTAGTTATGAACGTAGTCTGTACCGTCC
TCGCACTTATTATGCTTTCGACCGTGAAATTGAACTGAAAACGCCACGTG
TGTGACAGACCCGTAAGACGAAGGAAGACCAGCTCCGCAAGAAGATGCAG
GAGACGCAGCGGAGCTCCAGCGCCCGGGAGATGATGTTCGCGCTCGAGAA
GGCCAAGAGGGAGAGGCTGGAGGCCACGATGCACCACTTCGAGCAGCACA
TGCACCAGAGAGAGCTCACGCTTGCCGAGAAGGTGCGCTTGTGCGCTACA
TGCAGCAGAGAGGAGGCGTATTTGCGAGTCCGAATATCCCCTCAAGAAGC
GGGAAAATGAGAGAAGGCGTATTTGCGAGCCCGACTATCCTGTCAAAGCG
GTAAAAACGGGAAATTATTTCTAGCCTTTCCCCCCACCTCCGCATGGAGA
TGCACGCTGAGCGTCTATTCGTGGGGTAGACTAAGGGGATGTTCGTGGTC
AACCTCGGAGAGAAATTCCTGCACGAAGGCCCGTAGTGAACAATCGAAAG
CGACTCCTAGAAGGGGCGGGCATTCTCTGCCAGATACTGCAAACTACGGA
CCTCCTGTGTCTGTCGATTATCCCAGTTTCTGTAGAGCTTGTAACGAGTC
AATTTGACCTGCGCTGCAGCAAACAATGCAAGGTTAGTTGACGGCGCGAC
CTACATAGTGAAGTGTAGACCCTCTCTTGAGACGACTCAAATCAACGATT
CGGTGCCGCTTTTTCGAGGCGTGCGGCAGACGGCCGCGTATTCACACCAG
AATGACGTGAGATAATCGTCCGCCTCTCTCTGTGGAACGGTATGTAGAAT
CGGATCGATTCAACGTTGGAGCCTCGCGTTATGATCACAGAAACAAATCG
CCGTATCCGTGAAGACGTCAGCATTATTTTTAACGATGTTGTATCACAGA
TCAAGAAATCACCTTTTCACCGCTATCACTGATTGGCGCGCGCTCTTTTC
TTCGTCGCCCCCGCTTAAAACTACGTCGGCCCCTTTCCGCGTGCATGTAT
GTTTTTCGCTTCGGTGTCTCGCTCTCGCTCCCTGCCCCCTCTGGTTGGAG
CTTAGGAAAAAACGATCCTCGAGCTTCGGAGCAACAACACCACCCTTGAC
AACTTCAGGTATGTAGTACAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig686:30988..32511+

>mRNA_L-elsbetiae_contig686.15617.1 ID=mRNA_L-elsbetiae_contig686.15617.1|Name=mRNA_L-elsbetiae_contig686.15617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig686:30988..32511+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCTACACGGGGAGAGAGAGAACACCGGAAAACTCCGTGCCACCCTCCA
GGAGCTACACGGGGAGAGAGAGAACACCGGAAAACTCCGTGCCACCCTCC
AGACCCGTAAGACGAAGGAAGACCAGCTCCGCAAGAAGATGCAGGAGACG
CAGCGGAGCTCCAGCGCCCGGGAGATGATGTTCGCGCTCGAGAAGGCCAA
GAGGGAGAGGCTGGAGGCCACGATGCACCACTTCGAGCAGCACATGCACC
AGAGAGAGCTCACGCTTGCCGAGAAGACCCGTAAGACGAAGGAAGACCAG
CTCCGCAAGAAGATGCAGGAGACGCAGCGGAGCTCCAGCGCCCGGGAGAT
GATGTTCGCGCTCGAGAAGGCCAAGAGGGAGAGGCTGGAGGCCACGATGC
ACCACTTCGAGCAGCACATGCACCAGAGAGAGCTCACGCTTGCCGAGAAG
GAAAAAACGATCCTCGAGCTTCGGAGCAACAACACCACCCTTGACAACTT
CAGGTATGTAGTACAGTAGGAAAAAACGATCCTCGAGCTTCGGAGCAACA
ACACCACCCTTGACAACTTCAGGTATGTAGTACAGTAG
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